Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

48185931 .. 48186684

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGATTCTTTTAGACATTCTTGCAATCTATTTGAATCTGCAGATTAGTAGCCGCAATTTGGATAGGGTTCGTAAATTAAAAAGTGCAATGACAAGGTTGACTGCACAGGTCCAAAAGGTGAGGGATGAGCTTGAGCAGCTGCTGGATGATGATGATGATATGGCCGATCTTTACTTGTCAAGAAAGTTGGCAGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGTCTCCCCCACCATAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

86

Amino Acids

9.59

Weight (kDa)

5.15

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	11 - 63	4.6e-06	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	58, 254
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	130, 139
AluI	AGCT	2 cut(s)	130, 139
Alw26I	GTCTC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	136, 139
AspS9I	GGNCC	2 cut(s)	109, 221
AsuHPI	GGTGA	2 cut(s)	130, 195
AvaII	GGWCC	2 cut(s)	109, 221
BbvI	GCAGC	2 cut(s)	126, 148
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	3 cut(s)	52, 137, 140
BlsI	GCNGC	3 cut(s)	53, 138, 141
Bme18I	GGWCC	2 cut(s)	109, 221
BmgT120I	GGNCC	2 cut(s)	109, 221
BpuEI	CTTGAG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 254
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	130, 151
BseLI	CCNNNNNNNGG	2 cut(s)	58, 254
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	126, 148
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	58, 254
BsmAI	GTCTC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	130, 151
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	126, 148
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	130, 151
BveI	ACCTGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	109, 221
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	5 cut(s)	51, 130, 139, 164, 258
CviKI_1	RGCY	5 cut(s)	51, 130, 139, 164, 258
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	109, 221
FaeI	CATG	1 cut(s)	201
FaiI	YATR	3 cut(s)	161, 199, 254
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	52, 137, 140
FokI	GGATG	2 cut(s)	137, 158
Fsp4HI	GCNGC	3 cut(s)	52, 137, 140
GluI	GCNGC	3 cut(s)	52, 137, 140
HaeIII	GGCC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	4, 34
HphI	GGTGA	2 cut(s)	130, 195
Hpy166II	GTNNAC	2 cut(s)	99, 203
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	2 cut(s)	99, 203
HpyCH4V	TGCA	5 cut(s)	23, 40, 86, 104, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	92, 128, 177, 204, 219, 252
Lsp1109I	GCAGC	2 cut(s)	126, 148
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MfeI	CAATTG	1 cut(s)	229
MluCI	AATT	3 cut(s)	55, 74, 229
MnlI	CCTC	3 cut(s)	114, 226, 234
MseI	TTAA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	201
NspI	RCATGY	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	4, 34
PkrI	GCNGC	3 cut(s)	53, 138, 141
PspPI	GGNCC	2 cut(s)	109, 221
PstI	CTGCAG	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	3 cut(s)	52, 137, 140
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	109, 221
SetI	ASST	6 cut(s)	98, 111, 120, 132, 141, 196
SfcI	CTRYAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	109, 221
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	55, 74, 229
SsiI	CCGC	1 cut(s)	52
TasI	AATT	3 cut(s)	55, 74, 229
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	4, 34
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	2 cut(s)	136, 139
VpaK11BI	GGWCC	2 cut(s)	109, 221
XceI	RCATGY	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.