pycom10g16560

Magnesium transporter MRS2-I-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
19741016 .. 19741364
349 bp
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UTR
Exon/CDS
Intron
pycom10g16560.1

Sequence Viewer

Length: 267 bp
ATGGCAGACCTTTACTTATCAAGAAAGATGGTCGGGACTTCACCTGTCAGCGACTCTGGCGCTCCAAATTGGTCTCTCGCCTCACCTACTATAACTATAGGGTCAAAGGTATCCAGAACAAGCAGGGCGAGTGCAGCAACGACAGTTGAAGATGAGAATGATGTCGAGGAACTTGAAATGTTGCTCGAGGCTTACTTTATGCAAATTGACGGTACATTGAATAAATTGACAACGGTATGCGCTACTACTAGTATTGCAGCATCCTAA

Protein Analysis

89

Amino Acids

9.32

Weight (kDa)

4.37

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 3 cut(s) 149, 176, 220
AhlI ACTAGT 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 134, 257
AspLEI GCGC 2 cut(s) 62, 242
AsuHPI GGTGA 2 cut(s) 33, 75
AvaI CYCGRG 1 cut(s) 185
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 78
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 63
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 2 cut(s) 135, 258
BlsI GCNGC 2 cut(s) 136, 259
BmeT110I CYCGRG 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 78
BseGI GGATG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 49
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 145, 212, 235
BstF5I GGATG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 242
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 57, 134
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 260
CfoI GCGC 2 cut(s) 62, 242
Csp6I GTAC 1 cut(s) 213
CviJI RGCY 1 cut(s) 191
CviKI_1 RGCY 1 cut(s) 191
CviQI GTAC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 185
FaiI YATR 4 cut(s) 92, 98, 200, 238
FaqI GGGAC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 135, 258
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 135, 258
FspBI CTAG 1 cut(s) 249
GlaI GCGC 2 cut(s) 61, 241
GluI GCNGC 2 cut(s) 135, 258
HaeII RGCGCY 1 cut(s) 63
HhaI GCGC 2 cut(s) 62, 242
Hin6I GCGC 2 cut(s) 60, 240
HinP1I GCGC 2 cut(s) 60, 240
HinfI GANTC 1 cut(s) 53
HphI GGTGA 2 cut(s) 33, 75
Hpy188III TCNNGA 3 cut(s) 21, 34, 114
HpyCH4III ACNGT 3 cut(s) 145, 212, 235
HpyCH4V TGCA 3 cut(s) 134, 202, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 134
HspAI GCGC 2 cut(s) 60, 240
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 42, 57, 109, 127
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 249
MboII GAAGA 1 cut(s) 161
MluCI AATT 3 cut(s) 67, 204, 224
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 91, 160, 181
MwoI GCNNNNNNNGC 2 cut(s) 57, 134
PaeR7I CTCGAG 1 cut(s) 185
PkrI GCNGC 2 cut(s) 136, 259
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspXI VCTCGAGB 1 cut(s) 185
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 135, 258
SchI GAGTC 1 cut(s) 47
SetI ASST 4 cut(s) 12, 46, 88, 111
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 3 cut(s) 67, 204, 224
SspMI CTAG 1 cut(s) 249
TaaI ACNGT 3 cut(s) 145, 212, 235
TaqI TCGA 2 cut(s) 165, 186
TasI AATT 3 cut(s) 67, 204, 224
TseI GCWGC 2 cut(s) 134, 257
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.