Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

3452435 .. 3456838

Gene Structure 4404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG022600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACTCGAGGAGGAGGAGGAGGAGGAGACGGGGAAGCCGTTGCGGCGGTGGCGGTGGTGGACCCTCAGGCGGTGGTGGCGGTGAAGAAGAAGTCGTCTCGGAGCTGGGTTTTGCTGGACGCGACGGGACAAGCGACGGTGTTGGATGTGGACAAGTATGCGATCATGCACAGAGTCCACATTCACGCTCGGGATCTCCGCATTGTCGACCCTCTGCTCTCTTACCCTTCCGCCATTCTCGGACGTGACAGGGCTATTGTTCTCAATCTGGAGCATATTAAAGCGATAATTACTGCTGAAGAGGTGCTGCTTCGGGATCCGTTGGATGAAAATGTTATTCCTGTTGTTGAAGAGCTTCAAAGACGGTTGCCTCCTGTTAATTCCAATCGTGAAAATCAAACAGATGGAAGAGAGTTCCCTGCTGGGCACAATGATGTTGACGCTGGTGAAGAAGATGAGTCTCCATTTGAATTCCGGGCCTTGGAGGTAGCCTTGGAAGCAATTTGTAGTTTTCTTGCTGCACGTACAACAGAACTGGAGACTGCTGCTTATCCGGCTCTAGATGAGCTTACCTCTAAGATTAGTAGTCGCAATTTGGATAGGGTTCGTAAATTGAAAAGTGCAATGACAAGGTTGACTGCACGGGTCCAAAAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGTGGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGCCTCCCCTACCATAGGCTCAAAAATATCACGGGCAAGTAGAGCAAGTATGATAACTGTTCGTGGAGATGAGAATGACGTTGAGGAACTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGGTAAGCTTATCATTTTGTCGGCTTACAAGGAGAATTGAACCTAGAATCTGTCCTTCTTCCCCTCCTACCCAACCACATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

336

Amino Acids

36.89

Weight (kDa)

5.11

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	39 - 241	7.5e-27	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	122
AciI	CCGC	7 cut(s)	44, 47, 53, 71, 80, 199, 231
AclWI	GGATC	3 cut(s)	201, 311, 324
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	3 cut(s)	70, 481, 791
AgsI	TTSAA	7 cut(s)	350, 359, 470, 616, 869, 913, 965
AjiI	CACGTC	1 cut(s)	245
AluBI	AGCT	7 cut(s)	105, 355, 568, 667, 676, 923, 933
AluI	AGCT	7 cut(s)	105, 355, 568, 667, 676, 923, 933
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	4 cut(s)	21, 102, 465, 533
AlwI	GGATC	3 cut(s)	201, 311, 324
AlwNI	CAGNNNCTG	1 cut(s)	679
Ama87I	CYCGRG	3 cut(s)	6, 189, 668
AoxI	GGCC	2 cut(s)	477, 699
ApeKI	GCWGC	5 cut(s)	307, 518, 545, 673, 676
ApoI	RAATTY	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	4 cut(s)	61, 477, 646, 758
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	4 cut(s)	94, 458, 667, 732
AvaI	CYCGRG	3 cut(s)	6, 189, 668
AvaII	GGWCC	3 cut(s)	61, 646, 758
AxyI	CCTNAGG	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	5 cut(s)	294, 505, 532, 663, 685
BccI	CCATC	2 cut(s)	398, 896
BceAI	ACGGC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	4 cut(s)	21, 102, 465, 533
BfaI	CTAG	2 cut(s)	560, 969
BfuI	GTATCC	1 cut(s)	783
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	6 cut(s)	45, 308, 519, 546, 674, 677
BlsI	GCNGC	6 cut(s)	46, 309, 520, 547, 675, 678
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	3 cut(s)	61, 646, 758
BmeT110I	CYCGRG	3 cut(s)	6, 189, 668
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	61, 477, 646, 758
BmiI	GGNNCC	4 cut(s)	63, 318, 647, 907
BmrFI	CCNGG	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	3 cut(s)	290, 557, 899
BpuMI	CCSGG	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	480, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 481, 791
Bse1I	ACTGG	3 cut(s)	540, 743, 882
Bse21I	CCTNAGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	480, 492
BseGI	GGATG	4 cut(s)	151, 331, 667, 688
BseLI	CCNNNNNNNGG	3 cut(s)	70, 481, 791
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	540, 743, 882
BseRI	GAGGAG	6 cut(s)	24, 27, 30, 33, 36, 39
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	294, 505, 532, 663, 685
BseYI	CCCAGC	2 cut(s)	105, 422
BsgI	GTGCAG	2 cut(s)	504, 624
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	479, 701
BshNI	GGYRCC	1 cut(s)	905
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	3 cut(s)	6, 189, 668
BsiSI	CCGG	2 cut(s)	475, 554
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	70, 481, 791
BsmAI	GTCTC	4 cut(s)	21, 102, 465, 533
BsmBI	CGTCTC	2 cut(s)	21, 102
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	479, 701
BsoBI	CYCGRG	3 cut(s)	6, 189, 668
Bsp1286I	GDGCHC	2 cut(s)	429, 669
Bsp143I	GATC	3 cut(s)	162, 193, 316
BspACI	CCGC	7 cut(s)	44, 47, 53, 71, 80, 199, 231
BspANI	GGCC	2 cut(s)	479, 701
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	63, 318, 647, 907
BspPI	GGATC	3 cut(s)	201, 311, 324
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	540, 743, 882
BssECI	CCNNGG	2 cut(s)	480, 492
BssMI	GATC	3 cut(s)	162, 193, 316
BssT1I	CCWWGG	2 cut(s)	480, 492
Bst4CI	ACNGT	4 cut(s)	139, 366, 835, 928
Bst6I	CTCTTC	3 cut(s)	294, 345, 403
BstBAI	YACGTR	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	66, 576
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	4 cut(s)	151, 331, 667, 688
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	3 cut(s)	165, 196, 319
BstMAI	GTCTC	4 cut(s)	21, 102, 465, 533
BstMBI	GATC	3 cut(s)	162, 193, 316
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 50, 77, 497, 554, 673, 818
BstNSI	RCATGY	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	429
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	5 cut(s)	294, 505, 532, 663, 685
BstX2I	RGATCY	2 cut(s)	193, 316
BstXI	CCANNNNNNTGG	1 cut(s)	1004
BstYI	RGATCY	2 cut(s)	193, 316
Bsu36I	CCTNAGG	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	479, 701
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	151, 331, 667, 688
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr13I	GGNCC	4 cut(s)	61, 477, 646, 758
CseI	GACGC	2 cut(s)	128, 449
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	3 cut(s)	166, 735, 1004
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	2 cut(s)	66, 576
DpnI	GATC	3 cut(s)	164, 195, 318
DpnII	GATC	3 cut(s)	162, 193, 316
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	3 cut(s)	294, 345, 403
EarI	CTCTTC	3 cut(s)	294, 345, 403
EciI	GGCGGA	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	480, 492
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	3 cut(s)	61, 646, 758
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	66
Eco88I	CYCGRG	3 cut(s)	6, 189, 668
EcoICRI	GAGCTC	1 cut(s)	667
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	470
EcoT14I	CCWWGG	2 cut(s)	480, 492
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	2 cut(s)	480, 492
Esp3I	CGTCTC	2 cut(s)	21, 102
FaeI	CATG	3 cut(s)	169, 738, 1007
FaiI	YATR	9 cut(s)	159, 167, 276, 698, 736, 791, 827, 893, 1005
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	165, 734, 1003
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	6 cut(s)	45, 308, 519, 546, 674, 677
FokI	GGATG	4 cut(s)	158, 338, 674, 695
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	6 cut(s)	45, 308, 519, 546, 674, 677
FspBI	CTAG	2 cut(s)	560, 969
GluI	GCNGC	6 cut(s)	45, 308, 519, 546, 674, 677
GsaI	CCCAGC	2 cut(s)	109, 426
GsuI	CTGGAG	3 cut(s)	290, 557, 899
HaeIII	GGCC	2 cut(s)	479, 701
HapII	CCGG	2 cut(s)	475, 554
HgaI	GACGC	2 cut(s)	128, 449
Hin1II	CATG	3 cut(s)	169, 738, 1007
HincII	GTYRAC	3 cut(s)	208, 439, 636
HindII	GTYRAC	3 cut(s)	208, 439, 636
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	4 cut(s)	4, 174, 458, 972
HpaII	CCGG	2 cut(s)	475, 554
HphI	GGTGA	4 cut(s)	94, 458, 667, 732
Hpy166II	GTNNAC	7 cut(s)	61, 151, 178, 208, 439, 636, 740
Hpy188I	TCNGA	2 cut(s)	102, 242
Hpy188III	TCNNGA	6 cut(s)	191, 269, 314, 389, 560, 717
Hpy8I	GTNNAC	7 cut(s)	61, 151, 178, 208, 439, 636, 740
Hpy99I	CGWCG	2 cut(s)	127, 139
HpyAV	CCTTC	2 cut(s)	237, 990
HpyCH4III	ACNGT	4 cut(s)	139, 366, 835, 928
HpyCH4IV	ACGT	3 cut(s)	244, 523, 855
HpyCH4V	TGCA	6 cut(s)	169, 521, 623, 641, 734, 895
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 50, 77, 497, 554, 673, 818
HpyF3I	CTNAG	2 cut(s)	66, 576
HpySE526I	ACGT	3 cut(s)	244, 523, 855
Hsp92II	CATG	3 cut(s)	169, 738, 1007
Kzo9I	GATC	3 cut(s)	162, 193, 316
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	102, 271
Lsp1109I	GCAGC	5 cut(s)	294, 505, 532, 663, 685
MaeI	CTAG	2 cut(s)	560, 969
MaeII	ACGT	3 cut(s)	244, 523, 855
MaeIII	GTNAC	2 cut(s)	245, 873
MalI	GATC	3 cut(s)	164, 195, 318
MboI	GATC	3 cut(s)	162, 193, 316
MboII	GAAGA	8 cut(s)	97, 100, 311, 362, 420, 461, 464, 975
MfeI	CAATTG	1 cut(s)	766
MflI	RGATCY	2 cut(s)	193, 316
MhlI	GDGCHC	2 cut(s)	429, 669
MluCI	AATT	8 cut(s)	288, 379, 470, 501, 592, 611, 766, 960
MlyI	GAGTC	2 cut(s)	183, 467
MmeI	TCCRAC	2 cut(s)	123, 303
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	279, 378
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	676
MspI	CCGG	2 cut(s)	475, 554
MspR9I	CCNGG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	766
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	7 cut(s)	44, 50, 77, 497, 554, 673, 818
NciI	CCSGG	1 cut(s)	476
NdeII	GATC	3 cut(s)	162, 193, 316
NlaIII	CATG	3 cut(s)	169, 738, 1007
NlaIV	GGNNCC	4 cut(s)	63, 318, 647, 907
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	738
PaeR7I	CTCGAG	2 cut(s)	6, 668
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 131
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	972
PkrI	GCNGC	6 cut(s)	46, 309, 520, 547, 675, 678
PleI	GAGTC	2 cut(s)	182, 466
PpsI	GAGTC	2 cut(s)	182, 466
Ppu21I	YACGTR	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	669
PspFI	CCCAGC	2 cut(s)	105, 422
PspN4I	GGNNCC	4 cut(s)	63, 318, 647, 907
PspPI	GGNCC	4 cut(s)	61, 477, 646, 758
PspXI	VCTCGAGB	2 cut(s)	6, 668
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	193, 316
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	279, 378
SatI	GCNGC	6 cut(s)	45, 308, 519, 546, 674, 677
Sau3AI	GATC	3 cut(s)	162, 193, 316
Sau96I	GGNCC	4 cut(s)	61, 477, 646, 758
SchI	GAGTC	2 cut(s)	183, 467
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	2 cut(s)	429, 669
Sfr274I	CTCGAG	2 cut(s)	6, 668
SinI	GGWCC	3 cut(s)	61, 646, 758
SlaI	CTCGAG	2 cut(s)	6, 668
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	6, 668
SmoI	CTYRAG	2 cut(s)	6, 668
Sse9I	AATT	8 cut(s)	288, 379, 470, 501, 592, 611, 766, 960
SsiI	CCGC	7 cut(s)	44, 47, 53, 71, 80, 199, 231
SspMI	CTAG	2 cut(s)	560, 969
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	2 cut(s)	480, 492
TaaI	ACNGT	4 cut(s)	139, 366, 835, 928
TaiI	ACGT	3 cut(s)	247, 526, 858
TaqI	TCGA	3 cut(s)	7, 207, 669
TasI	AATT	8 cut(s)	288, 379, 470, 501, 592, 611, 766, 960
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	972
Tru1I	TTAA	2 cut(s)	279, 378
Tru9I	TTAA	2 cut(s)	279, 378
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	5 cut(s)	307, 518, 545, 673, 676
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	309
VpaK11BI	GGWCC	3 cut(s)	61, 646, 758
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	1 cut(s)	470
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	738
XhoI	CTCGAG	2 cut(s)	6, 668
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	560, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.