Rw6G027140

Magnesium transporter MRS2-I-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
50835249 .. 50837911
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027140.1

Sequence Viewer

Length: 1191 bp
ATGATTGCTTTGGAAATGGCTCGAGATGGGTCCCTAGTTAATTTGGAGACTCAAGCTCAAGCTAACAAGAAGACTGCAGCTTTAAGGAGCTGGATTTCATTGGACCAAGATGGCCAAGGAACCGTTTTGGATTTGGACAAGTATGCTATTATGCGCCGAGTTAACATTCACGCTCGAGATCTTCGGCTTCTTGATCCATTGCTATCCTATCCTTCCACAATTTTGGGCAGAGAGAGAGTCATTGTTCTCAATTTGGAGCACATCAAAGCAATAATCACAGCGGAGGAGGTATTGCTTAGGGACCCATTTGATGATAATGTGCTGCCTATTGTTGAGGAACTTCAAAGACGTTTGCCTCCGACAAGTACCAATTTCAATGGCCCAGGAGAAGAAGAAGACTCCGGGTTACAAAAAGATGTTGAAACCGGTGAAGATGATGATTTTCCATTTGAATTCCGGGCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCTCTTGATGCTTGCACAAGAGAACTAGAGAGTGATGCTTATCCAGCTTTAGATGAGCTTACCTCCAAGATCAGCAGTCGTAATTTGGATCGGGTGCGTAAGCTGAAGAGTGCAATGACCAGGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTCGAACAGCTACTTGACGATGACGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTCTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCCAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGATGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGCTGCGTGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTGTTTCTGAGTTCTGGAACTGTTTGTGTGTCTATATATTCTTTGGTGGCTGCAATATTTGGCATGAACATTAAGTACACATGGAACGAAAATCATGAGCACGTATTCAAATGGGTGGTGATTACAACAGGATTAGTTGGCGCATCGATTTTCTTGTTTATAGTTTCGTATGCTCGGCACAAAGGTCTTGTTGGATCCTGA

Protein Analysis

396

Amino Acids

44.53

Weight (kDa)

4.65

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRS2-like PF22099 38 - 235 2.2e-26 Magnesium transporter MRS2-like
MRS2-like PF22099 275 - 323 1.8e-07 Magnesium transporter MRS2-like
CorA PF01544 282 - 383 7.4e-06 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AclWI GGATC 3 cut(s) 188, 588, 1179
AcoI YGGCCR 2 cut(s) 112, 681
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 3 cut(s) 367, 490, 1067
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 8 cut(s) 344, 376, 422, 452, 632, 884, 895, 1099
AjnI CCWGG 2 cut(s) 382, 611
Alw21I GWGCWC 3 cut(s) 261, 742, 1092
Alw26I GTCTC 2 cut(s) 41, 756
AlwI GGATC 3 cut(s) 188, 588, 1179
Ama87I CYCGRG 3 cut(s) 21, 174, 860
AoxI GGCC 4 cut(s) 112, 379, 681, 864
ApeKI GCWGC 4 cut(s) 77, 322, 910, 1040
ApoI RAATTY 1 cut(s) 452
AsiGI ACCGGT 1 cut(s) 425
AspLEI GCGC 2 cut(s) 156, 1133
AspS9I GGNCC 4 cut(s) 30, 103, 301, 380
AsuC2I CCSGG 2 cut(s) 403, 458
AsuHPI GGTGA 3 cut(s) 440, 711, 1120
AvaI CYCGRG 3 cut(s) 21, 174, 860
AvaII GGWCC 3 cut(s) 30, 103, 301
BalI TGGCCA 1 cut(s) 114
BamHI GGATCC 1 cut(s) 1184
BbsI GAAGAC 2 cut(s) 77, 402
Bbv12I GWGCWC 3 cut(s) 261, 742, 1092
BbvI GCAGC 4 cut(s) 89, 309, 897, 1027
BccI CCATC 2 cut(s) 20, 104
BciT130I CCWGG 2 cut(s) 384, 613
BciVI GTATCC 1 cut(s) 799
BcnI CCSGG 2 cut(s) 403, 458
BcoDI GTCTC 2 cut(s) 41, 756
BfaI CTAG 4 cut(s) 35, 476, 518, 986
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 799
BglI GCCNNNNNGGC 1 cut(s) 803
BglII AGATCT 1 cut(s) 178
BisI GCNGC 4 cut(s) 78, 323, 911, 1041
BlsI GCNGC 4 cut(s) 79, 324, 912, 1042
Bme1390I CCNGG 4 cut(s) 384, 403, 458, 613
Bme18I GGWCC 3 cut(s) 30, 103, 301
BmeT110I CYCGRG 3 cut(s) 21, 174, 860
BmgT120I GGNCC 4 cut(s) 30, 103, 301, 380
BmiI GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 1186
BmrFI CCNGG 4 cut(s) 384, 403, 458, 613
BmsI GCATC 3 cut(s) 490, 517, 1142
BpiI GAAGAC 2 cut(s) 77, 402
BplI GAGNNNNNCTC 2 cut(s) 539, 571
Bpu10I CCTNAGC 1 cut(s) 296
BpuEI CTTGAG 3 cut(s) 36, 42, 869
BpuMI CCSGG 2 cut(s) 403, 458
Bsa29I ATCGAT 1 cut(s) 1136
BsaAI YACGTR 1 cut(s) 1093
BsaBI GATNNNNATC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 115, 382
BsaWI WCCGGW 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 425
Bse3DI GCAATG 2 cut(s) 197, 612
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 2 cut(s) 384, 613
BseCI ATCGAT 1 cut(s) 1136
BseDI CCNNGG 2 cut(s) 115, 382
BseGI GGATG 2 cut(s) 649, 948
BseJI GATNNNNATC 1 cut(s) 531
BseMI GCAATG 2 cut(s) 197, 612
BseMII CTCAG 1 cut(s) 989
BseRI GAGGAG 3 cut(s) 299, 842, 857
BseXI GCAGC 4 cut(s) 89, 309, 897, 1027
BshFI GGCC 4 cut(s) 114, 381, 683, 866
BshTI ACCGGT 1 cut(s) 425
BshVI ATCGAT 1 cut(s) 1136
BsiHKAI GWGCWC 3 cut(s) 261, 742, 1092
BsiHKCI CYCGRG 3 cut(s) 21, 174, 860
BsiSI CCGG 3 cut(s) 402, 426, 457
BslFI GGGAC 3 cut(s) 16, 314, 727
BsmAI GTCTC 2 cut(s) 41, 756
BsmFI GGGAC 3 cut(s) 16, 314, 727
BsnI GGCC 4 cut(s) 114, 381, 683, 866
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 3 cut(s) 21, 174, 860
Bsp1286I GDGCHC 3 cut(s) 261, 742, 1092
Bsp143I GATC 5 cut(s) 178, 193, 561, 580, 1184
BspACI CCGC 1 cut(s) 281
BspANI GGCC 4 cut(s) 114, 381, 683, 866
BspCNI CTCAG 1 cut(s) 990
BspDI ATCGAT 1 cut(s) 1136
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 1186
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 3 cut(s) 188, 588, 1179
BspTNI GGTCTC 1 cut(s) 756
BsrDI GCAATG 2 cut(s) 197, 612
BsrFI RCCGGY 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 115, 382
BssMI GATC 5 cut(s) 178, 193, 561, 580, 1184
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 384, 613
Bst4CI ACNGT 3 cut(s) 124, 820, 1012
Bst6I CTCTTC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 1093
BstC8I GCNNGC 2 cut(s) 505, 799
BstDEI CTNAG 2 cut(s) 296, 998
BstF5I GGATG 2 cut(s) 649, 948
BstHHI GCGC 2 cut(s) 156, 1133
BstKTI GATC 5 cut(s) 181, 196, 564, 583, 1187
BstMAI GTCTC 2 cut(s) 41, 756
BstMBI GATC 5 cut(s) 178, 193, 561, 580, 1184
BstMWI GCNNNNNNNGC 4 cut(s) 479, 536, 803, 982
BstNI CCWGG 2 cut(s) 384, 613
BstSCI CCNGG 4 cut(s) 382, 401, 456, 611
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 4 cut(s) 89, 309, 897, 1027
BstV2I GAAGAC 2 cut(s) 77, 402
BstX2I RGATCY 2 cut(s) 178, 1184
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 2 cut(s) 178, 1184
Bsu15I ATCGAT 1 cut(s) 1136
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 4 cut(s) 114, 381, 683, 866
BsuTUI ATCGAT 1 cut(s) 1136
BtsCI GGATG 2 cut(s) 649, 948
Cac8I GCNNGC 2 cut(s) 505, 799
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 2 cut(s) 156, 1133
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 4 cut(s) 30, 103, 301, 380
ClaI ATCGAT 1 cut(s) 1136
CsiI ACCWGGT 1 cut(s) 611
Csp6I GTAC 3 cut(s) 366, 489, 1066
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 4 cut(s) 679, 1054, 1071, 1085
CviQI GTAC 3 cut(s) 366, 489, 1066
DdeI CTNAG 2 cut(s) 296, 998
DpnI GATC 5 cut(s) 180, 195, 563, 582, 1186
DpnII GATC 5 cut(s) 178, 193, 561, 580, 1184
EaeI YGGCCR 2 cut(s) 112, 681
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 866
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 3 cut(s) 30, 103, 301
Eco57I CTGAAG 1 cut(s) 617
Eco88I CYCGRG 3 cut(s) 21, 174, 860
EcoO109I RGGNCCY 2 cut(s) 30, 301
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 382, 611
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 682, 1057, 1074, 1088
FaqI GGGAC 3 cut(s) 16, 314, 727
FatI CATG 4 cut(s) 678, 1053, 1070, 1084
Fnu4HI GCNGC 4 cut(s) 78, 323, 911, 1041
FokI GGATG 2 cut(s) 656, 935
Fsp4HI GCNGC 4 cut(s) 78, 323, 911, 1041
FspBI CTAG 4 cut(s) 35, 476, 518, 986
GlaI GCGC 2 cut(s) 155, 1132
GluI GCNGC 4 cut(s) 78, 323, 911, 1041
HaeIII GGCC 4 cut(s) 114, 381, 683, 866
HapII CCGG 3 cut(s) 402, 426, 457
HhaI GCGC 2 cut(s) 156, 1133
Hin1II CATG 4 cut(s) 682, 1057, 1074, 1088
Hin6I GCGC 2 cut(s) 154, 1131
HinP1I GCGC 2 cut(s) 154, 1131
HincII GTYRAC 2 cut(s) 163, 618
HindII GTYRAC 2 cut(s) 163, 618
HinfI GANTC 5 cut(s) 49, 237, 398, 731, 970
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 3 cut(s) 402, 426, 457
HphI GGTGA 3 cut(s) 440, 711, 1120
Hpy166II GTNNAC 3 cut(s) 163, 618, 1068
Hpy188I TCNGA 3 cut(s) 360, 969, 999
Hpy8I GTNNAC 3 cut(s) 163, 618, 1068
HpyAV CCTTC 2 cut(s) 222, 878
HpyCH4III ACNGT 3 cut(s) 124, 820, 1012
HpyCH4IV ACGT 3 cut(s) 349, 890, 1092
HpyCH4V TGCA 6 cut(s) 77, 473, 507, 605, 877, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 536, 803, 982
HpyF3I CTNAG 2 cut(s) 296, 998
HpySE526I ACGT 3 cut(s) 349, 890, 1092
Hsp92II CATG 4 cut(s) 682, 1057, 1074, 1088
HspAI GCGC 2 cut(s) 154, 1131
KflI GGGWCCC 2 cut(s) 30, 301
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 5 cut(s) 178, 193, 561, 580, 1184
LmnI GCTCC 4 cut(s) 87, 256, 745, 844
Lsp1109I GCAGC 4 cut(s) 89, 309, 897, 1027
LweI GCATC 3 cut(s) 490, 517, 1142
MabI ACCWGGT 1 cut(s) 611
MaeI CTAG 4 cut(s) 35, 476, 518, 986
MaeII ACGT 3 cut(s) 349, 890, 1092
MaeIII GTNAC 3 cut(s) 405, 728, 811
MalI GATC 5 cut(s) 180, 195, 563, 582, 1186
MboI GATC 5 cut(s) 178, 193, 561, 580, 1184
MboII GAAGA 7 cut(s) 82, 173, 401, 404, 407, 443, 610
MflI RGATCY 2 cut(s) 178, 1184
MhlI GDGCHC 3 cut(s) 261, 742, 1092
MlsI TGGCCA 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 4 cut(s) 43, 246, 392, 725
MmeI TCCRAC 2 cut(s) 383, 1162
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 5 cut(s) 39, 83, 162, 945, 1062
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 3 cut(s) 402, 426, 457
MspR9I CCNGG 4 cut(s) 384, 403, 458, 613
MvaI CCWGG 2 cut(s) 384, 613
MwoI GCNNNNNNNGC 4 cut(s) 479, 536, 803, 982
NciI CCSGG 2 cut(s) 403, 458
NdeII GATC 5 cut(s) 178, 193, 561, 580, 1184
NlaIII CATG 4 cut(s) 682, 1057, 1074, 1088
NlaIV GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 1186
NmeAIII GCCGAG 2 cut(s) 182, 1144
NmuCI GTSAC 1 cut(s) 728
PaeR7I CTCGAG 3 cut(s) 21, 174, 860
PagI TCATGA 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 866
PfeI GAWTC 1 cut(s) 970
PinAI ACCGGT 1 cut(s) 425
PkrI GCNGC 4 cut(s) 79, 324, 912, 1042
PleI GAGTC 4 cut(s) 43, 245, 392, 725
PpsI GAGTC 4 cut(s) 43, 245, 392, 725
Ppu21I YACGTR 1 cut(s) 1093
PpuMI RGGWCCY 2 cut(s) 30, 301
Psp5II RGGWCCY 2 cut(s) 30, 301
Psp6I CCWGG 2 cut(s) 382, 611
PspGI CCWGG 2 cut(s) 382, 611
PspN4I GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 1186
PspPI GGNCC 4 cut(s) 30, 103, 301, 380
PspPPI RGGWCCY 2 cut(s) 30, 301
PspXI VCTCGAGB 1 cut(s) 860
PsrI GAACNNNNNNTAC 4 cut(s) 804, 836, 1049, 1081
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 178, 1184
RsaI GTAC 3 cut(s) 367, 490, 1067
RsaNI GTAC 3 cut(s) 366, 489, 1066
SaqAI TTAA 5 cut(s) 39, 83, 162, 945, 1062
SatI GCNGC 4 cut(s) 78, 323, 911, 1041
Sau3AI GATC 5 cut(s) 178, 193, 561, 580, 1184
Sau96I GGNCC 4 cut(s) 30, 103, 301, 380
SchI GAGTC 4 cut(s) 43, 246, 392, 725
ScrFI CCNGG 4 cut(s) 384, 403, 458, 613
SduI GDGCHC 3 cut(s) 261, 742, 1092
SexAI ACCWGGT 1 cut(s) 611
SfaNI GCATC 3 cut(s) 490, 517, 1142
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 3 cut(s) 21, 174, 860
SinI GGWCC 3 cut(s) 30, 103, 301
SlaI CTCGAG 3 cut(s) 21, 174, 860
SmlI CTYRAG 6 cut(s) 21, 51, 57, 174, 848, 860
SmoI CTYRAG 6 cut(s) 21, 51, 57, 174, 848, 860
SseBI AGGCCT 1 cut(s) 866
SsiI CCGC 1 cut(s) 281
SspI AATATT 1 cut(s) 1047
SspMI CTAG 4 cut(s) 35, 476, 518, 986
StuI AGGCCT 1 cut(s) 866
StyD4I CCNGG 4 cut(s) 382, 401, 456, 611
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 124, 820, 1012
TaiI ACGT 3 cut(s) 352, 893, 1095
TaqI TCGA 5 cut(s) 22, 175, 651, 861, 1136
TatI WGTACW 2 cut(s) 488, 1065
TfiI GAWTC 1 cut(s) 970
Tru1I TTAA 5 cut(s) 39, 83, 162, 945, 1062
Tru9I TTAA 5 cut(s) 39, 83, 162, 945, 1062
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 4 cut(s) 77, 322, 910, 1040
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 3 cut(s) 87, 660, 1070
VpaK11BI GGWCC 3 cut(s) 30, 103, 301
XapI RAATTY 1 cut(s) 452
XhoI CTCGAG 3 cut(s) 21, 174, 860
XspI CTAG 4 cut(s) 35, 476, 518, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.