Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

3515699 .. 3519354

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCAGAGAGTCCACATTCACGCTCGGGATCTCCGCATTGTCGACCCTCTGCTTTCTTACCCTTCCGCCATTCTCGGACGTGACAGGGCTATTGTTCTCAATCTGGAGCATATTAAAGCGATAATTACTGCTGAAGAGGTGCTGCTTCGGGATCCGTTGGATGAAAATGTTATTCCAATTGTTGAAGAGCTTCAGAGACGGTTGCCTCCTGTAAATTCCAACCGTGAAAATCAAACAGATGGAAGTGAGTTCCCTGTTGACGCGGCTGAAGAAGATGAGTCTTCATTTGAATTCCGGGCCTTGGAGGTAGCCTTGGAAGTAATTTGTAGTTTTCTTGCTGCACGTACGACAGAACTGGAGACTGCTGCTTATCCGGCTCTAGATTTGCTTACCTCTAAGATTAGTAGCCACAATTTGGATAGGGTTCGTAAATTGAAAAGTGCAATGACAAGGTTGACTGCACGGGTCCAAAAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGCGGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGCCTCCCCTACCATAGGCTCAATATCACGGGCAAGCAGAGCAAGTATGGTAACTGGTCGTGGAGATGAGAATGACGTTGACGAACTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGCTGCGTGAATATATTGATGATACGGAGGATTACATAAATATTCAGCTCGATAACCACAGGAATCAGTTAATTCAGCTTGAGCTTATTCTTAGTTCTGGAACTGTTGGTTTATCCATGTATTCTTTGGTGTGTGGAATTTTTGGCGTGAATATCCCATATTCGTGGAACCAGGATCATGGATACATGTTTAAATGGGTTTGGATTGTCACAGGAATAGTATGTTTCTCTGTTTTCATAGTAATTGTAGCATATGCTCGCCACAAAGGGTTGGTCGGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

342

Amino Acids

38.37

Weight (kDa)

4.73

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	2 - 183	2e-22	Magnesium transporter MRS2-like
MRS2-like	PF22099	222 - 269	5.2e-08	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	263
AciI	CCGC	4 cut(s)	34, 66, 263, 551
AclWI	GGATC	4 cut(s)	36, 146, 159, 927
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	3 cut(s)	214, 290, 882
AcuI	CTGAAG	3 cut(s)	153, 176, 288
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	3 cut(s)	301, 415, 614
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	5 cut(s)	185, 290, 436, 689, 733
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	915
AluBI	AGCT	7 cut(s)	190, 487, 496, 743, 793, 823, 829
AluI	AGCT	7 cut(s)	190, 487, 496, 743, 793, 823, 829
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	190, 353
AlwI	GGATC	4 cut(s)	36, 146, 159, 927
AlwNI	CAGNNNCTG	1 cut(s)	499
Ama87I	CYCGRG	2 cut(s)	24, 488
AoxI	GGCC	2 cut(s)	297, 522
ApeKI	GCWGC	6 cut(s)	142, 338, 365, 493, 496, 748
ApoI	RAATTY	3 cut(s)	214, 290, 882
ArsI	GACNNNNNNTTYG	1 cut(s)	1002
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	297, 466, 581
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	487, 555
AvaI	CYCGRG	2 cut(s)	24, 488
AvaII	GGWCC	2 cut(s)	466, 581
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	6 cut(s)	129, 325, 352, 483, 505, 735
BccI	CCATC	2 cut(s)	233, 716
BciT130I	CCWGG	1 cut(s)	917
BciVI	GTATCC	2 cut(s)	606, 920
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	190, 353
BfaI	CTAG	1 cut(s)	380
BfuI	GTATCC	2 cut(s)	606, 920
BisI	GCNGC	7 cut(s)	143, 264, 339, 366, 494, 497, 749
BlsI	GCNGC	7 cut(s)	144, 265, 340, 367, 495, 498, 750
Bme1390I	CCNGG	2 cut(s)	296, 917
Bme18I	GGWCC	2 cut(s)	466, 581
BmeT110I	CYCGRG	2 cut(s)	24, 488
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	297, 466, 581
BmiI	GGNNCC	4 cut(s)	153, 467, 727, 914
BmrFI	CCNGG	2 cut(s)	296, 917
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	3 cut(s)	125, 377, 719
BpuEI	CTTGAG	1 cut(s)	845
BpuMI	CCSGG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	300, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 415, 614
Bse1I	ACTGG	4 cut(s)	360, 566, 658, 702
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	917
BseDI	CCNNGG	2 cut(s)	300, 312
BseGI	GGATG	3 cut(s)	166, 487, 508
BseLI	CCNNNNNNNGG	3 cut(s)	301, 415, 614
BseMI	GCAATG	1 cut(s)	450
BseNI	ACTGG	4 cut(s)	360, 566, 658, 702
BseXI	GCAGC	6 cut(s)	129, 325, 352, 483, 505, 735
BsgI	GTGCAG	2 cut(s)	324, 444
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	299, 524
BshNI	GGYRCC	1 cut(s)	725
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	2 cut(s)	24, 488
BsiSI	CCGG	2 cut(s)	295, 374
BsiWI	CGTACG	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	301, 415, 614
BsmAI	GTCTC	2 cut(s)	190, 353
BsmBI	CGTCTC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	299, 524
BsoBI	CYCGRG	2 cut(s)	24, 488
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	28, 151, 919, 1022
BspACI	CCGC	4 cut(s)	34, 66, 263, 551
BspANI	GGCC	2 cut(s)	299, 524
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	153, 467, 727, 914
BspPI	GGATC	4 cut(s)	36, 146, 159, 927
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	4 cut(s)	360, 566, 658, 702
BssECI	CCNNGG	2 cut(s)	300, 312
BssMI	GATC	4 cut(s)	28, 151, 919, 1022
BssT1I	CCWWGG	2 cut(s)	300, 312
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	3 cut(s)	201, 224, 850
Bst6I	CTCTTC	2 cut(s)	129, 180
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	634, 1003
BstDEI	CTNAG	2 cut(s)	396, 836
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	3 cut(s)	166, 487, 508
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	4 cut(s)	31, 154, 922, 1025
BstMAI	GTCTC	2 cut(s)	190, 353
BstMBI	GATC	4 cut(s)	28, 151, 919, 1022
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 493, 638
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	2 cut(s)	561, 934
BstSCI	CCNGG	2 cut(s)	294, 915
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	6 cut(s)	129, 325, 352, 483, 505, 735
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	2 cut(s)	28, 151
BstXI	CCANNNNNNTGG	2 cut(s)	909, 923
BstYI	RGATCY	2 cut(s)	28, 151
BsuI	GTATCC	2 cut(s)	606, 920
BsuRI	GGCC	2 cut(s)	299, 524
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	166, 487, 508
Cac8I	GCNNGC	2 cut(s)	634, 1003
CaiI	CAGNNNCTG	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	297, 466, 581
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	4 cut(s)	558, 862, 923, 931
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	396, 836
DpnI	GATC	4 cut(s)	30, 153, 921, 1024
DpnII	GATC	4 cut(s)	28, 151, 919, 1022
DraI	TTTAAA	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	129, 180
EarI	CTCTTC	2 cut(s)	129, 180
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	300, 312
Eco24I	GRGCYC	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	466, 581
Eco53kI	GAGCTC	1 cut(s)	487
Eco57I	CTGAAG	3 cut(s)	153, 176, 288
Eco88I	CYCGRG	2 cut(s)	24, 488
EcoICRI	GAGCTC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	915
EcoT14I	CCWWGG	2 cut(s)	300, 312
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	2 cut(s)	300, 312
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	4 cut(s)	561, 865, 926, 934
FatI	CATG	4 cut(s)	557, 861, 922, 930
FauI	CCCGC	1 cut(s)	544
FauNDI	CATATG	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	7 cut(s)	143, 264, 339, 366, 494, 497, 749
FokI	GGATG	3 cut(s)	173, 494, 515
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	7 cut(s)	143, 264, 339, 366, 494, 497, 749
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	7 cut(s)	143, 264, 339, 366, 494, 497, 749
GsuI	CTGGAG	3 cut(s)	125, 377, 719
HaeIII	GGCC	2 cut(s)	299, 524
HapII	CCGG	2 cut(s)	295, 374
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	561, 865, 926, 934
HincII	GTYRAC	4 cut(s)	43, 259, 456, 679
HindII	GTYRAC	4 cut(s)	43, 259, 456, 679
HinfI	GANTC	3 cut(s)	9, 278, 808
HpaII	CCGG	2 cut(s)	295, 374
HphI	GGTGA	2 cut(s)	487, 555
Hpy166II	GTNNAC	6 cut(s)	13, 43, 259, 456, 563, 679
Hpy188I	TCNGA	3 cut(s)	77, 195, 1022
Hpy188III	TCNNGA	7 cut(s)	26, 104, 149, 380, 540, 843, 1026
Hpy8I	GTNNAC	6 cut(s)	13, 43, 259, 456, 563, 679
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	201, 224, 850
HpyCH4IV	ACGT	3 cut(s)	79, 343, 675
HpyCH4V	TGCA	6 cut(s)	4, 341, 443, 461, 557, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 493, 638
HpyF3I	CTNAG	2 cut(s)	396, 836
HpySE526I	ACGT	3 cut(s)	79, 343, 675
Hsp92II	CATG	4 cut(s)	561, 865, 926, 934
Kzo9I	GATC	4 cut(s)	28, 151, 919, 1022
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	6 cut(s)	129, 325, 352, 483, 505, 735
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	3 cut(s)	79, 343, 675
MaeIII	GTNAC	4 cut(s)	80, 649, 693, 952
MalI	GATC	4 cut(s)	30, 153, 921, 1024
MboI	GATC	4 cut(s)	28, 151, 919, 1022
MboII	GAAGA	5 cut(s)	146, 197, 273, 281, 284
MfeI	CAATTG	2 cut(s)	177, 589
MflI	RGATCY	2 cut(s)	28, 151
MhlI	GDGCHC	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	18, 287
MmeI	TCCRAC	3 cut(s)	138, 243, 1000
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	3 cut(s)	114, 815, 936
MslI	CAYNNNNRTG	1 cut(s)	907
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	2 cut(s)	295, 374
MspR9I	CCNGG	2 cut(s)	296, 917
MunI	CAATTG	2 cut(s)	177, 589
MvaI	CCWGG	1 cut(s)	917
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	374, 493, 638
NciI	CCSGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	4 cut(s)	28, 151, 919, 1022
NlaIII	CATG	4 cut(s)	561, 865, 926, 934
NlaIV	GGNNCC	4 cut(s)	153, 467, 727, 914
NmuCI	GTSAC	2 cut(s)	80, 952
NspI	RCATGY	2 cut(s)	561, 934
PaeR7I	CTCGAG	1 cut(s)	488
PciI	ACATGT	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	808
Pfl23II	CGTACG	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	415
PkrI	GCNGC	7 cut(s)	144, 265, 340, 367, 495, 498, 750
PleI	GAGTC	2 cut(s)	17, 286
PpsI	GAGTC	2 cut(s)	17, 286
Ppu21I	YACGTR	1 cut(s)	344
PscI	ACATGT	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspLI	CGTACG	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	153, 467, 727, 914
PspPI	GGNCC	3 cut(s)	297, 466, 581
PspXI	VCTCGAGB	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	28, 151
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	907
SacI	GAGCTC	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	114, 815, 936
SatI	GCNGC	7 cut(s)	143, 264, 339, 366, 494, 497, 749
Sau3AI	GATC	4 cut(s)	28, 151, 919, 1022
Sau96I	GGNCC	3 cut(s)	297, 466, 581
SchI	GAGTC	2 cut(s)	18, 287
ScrFI	CCNGG	2 cut(s)	296, 917
SduI	GDGCHC	1 cut(s)	489
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	2 cut(s)	466, 581
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	907
SmlI	CTYRAG	2 cut(s)	488, 824
SmoI	CTYRAG	2 cut(s)	488, 824
SsiI	CCGC	4 cut(s)	34, 66, 263, 551
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	294, 915
StyI	CCWWGG	2 cut(s)	300, 312
TaaI	ACNGT	3 cut(s)	201, 224, 850
TaiI	ACGT	3 cut(s)	82, 346, 678
TaqI	TCGA	3 cut(s)	42, 489, 795
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	3 cut(s)	114, 815, 936
Tru9I	TTAA	3 cut(s)	114, 815, 936
TseFI	GTSAC	2 cut(s)	80, 952
TseI	GCWGC	6 cut(s)	142, 338, 365, 493, 496, 748
Tsp45I	GTSAC	2 cut(s)	80, 952
TspDTI	ATGAA	3 cut(s)	177, 273, 970
TspGWI	ACGGA	2 cut(s)	144, 785
Van91I	CCANNNNNTGG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	466, 581
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	3 cut(s)	214, 290, 882
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	2 cut(s)	561, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XhoI	CTCGAG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.