FvH4_4g02330

magnesium transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
2146315 .. 2150756
4442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02330.t2

Sequence Viewer

Length: 1182 bp
ATGAGTCGCGGAGGAGAGGGAGAAGCTTTGGCGGACGCGCAGGCGGTGGTGGCGGTGAAGAAGAAGTCGTCTCGGAGCTGGGTGTTGCTGGACGCGACGGGACAGGCGACGGTGCTCGATGTCGACAAGTATGCTATCATGCATAGGGTTCACATTCACGCCAGGGACCTTCGCATTGTCGATCCTCTGCTCTCTTATCCTTCCGCCATTCTCGGCCGTGACAGGGCCATTGTTCTCAATCTGGAGCATATTAAAGCTATAATTACTGCTGAGGAGGTGCTGCTGCGGGATCCGTTGGATGAAAATGTTATACCTGTTGTGGAAGAGCTTCAAAGACGGTTGCCGCCTGGGAATTACATTCGTGAAAATCAAACGGATGGGAAAGAGTTCCCTGCTGGGCAAAATGATGTTGATGCAGGCGAAGAAGATGAGTCTCCATTTGAATTCCGGGCCTTGGAGGTAGCATTGGAAGCAATTTGTAGTTTTCTTGCTGCACGTACGACAGAACTGGAGACTGCTGCTTATCCGGCTCTAGATGAGCTTACCTCTAAGATTAGTAGCCGCAATTTGGATAGGGTTCGTAAACTGAAAAGTGCAATGACGAGGTTGACTGCACGGGTACAAAAGGTGAGGGATGAGCTGGAGCAGCTGCTGGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGCAGGTGCATGTTCACCGGTTAGTGCCTCTGGTCCTGCCGGTTGGTATCCTGCCTCCCCTACCATAGGCTCAAAAATATCACGGGCAAGTAGAGCAAGTATTCTAACTGTCCGTGGAGATGAGAATGACGTTGAGGAACTTGAAATGTTACTTGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGCTGCGTGAATATATTGATGATACAGAGGATTACATAAATATTCAGCTTGATAACCACAGGAATCAGTTAATTCAGCTTGAGCTTTTTCTTAGTTCTGGAACTGTTAGTTTATCCATATATTCTTTGGTGGGTGGAATTTTCGGCATGAATATCCCATATACGTGGAACGAGGGTCATGGATACATGTTTAAATGGGTTTGCATTGTCACAGGAATAGTATGTTTCTTTGTTTTCATAGTAATTGTAGCATACGCTCGCCACAAAGGGTTGGTTGGATCGTGA

Protein Analysis

394

Amino Acids

43.66

Weight (kDa)

4.9

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRS2-like PF22099 30 - 233 5.3e-27 Magnesium transporter MRS2-like
MRS2-like PF22099 273 - 320 5.9e-08 Magnesium transporter MRS2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 878
AccI GTMKAC 1 cut(s) 123
AccII CGCG 3 cut(s) 9, 38, 95
AciI CCGC 8 cut(s) 9, 32, 44, 53, 204, 286, 344, 562
AclWI GGATC 3 cut(s) 176, 284, 297
AcoI YGGCCR 2 cut(s) 214, 672
AcsI RAATTY 2 cut(s) 443, 1035
AfaI GTAC 2 cut(s) 499, 621
AfiI CCNNNNNNNGG 4 cut(s) 223, 454, 568, 764
AflIII ACRYGT 1 cut(s) 1083
AgeI ACCGGT 1 cut(s) 715
AgsI TTSAA 4 cut(s) 332, 443, 842, 886
AjnI CCWGG 2 cut(s) 161, 346
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 3 cut(s) 75, 438, 506
AlwI GGATC 3 cut(s) 176, 284, 297
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 4 cut(s) 214, 225, 450, 672
ApeKI GCWGC 7 cut(s) 280, 283, 491, 518, 646, 649, 901
ApoI RAATTY 2 cut(s) 443, 1035
AsiGI ACCGGT 1 cut(s) 715
Asp700I GAANNNNTTC 2 cut(s) 327, 386
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 4 cut(s) 166, 225, 450, 731
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 67, 640, 705
AvaII GGWCC 2 cut(s) 166, 731
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 7 cut(s) 267, 270, 478, 505, 636, 658, 888
BccI CCATC 2 cut(s) 371, 869
BceAI ACGGC 1 cut(s) 201
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 163, 348
BciVI GTATCC 2 cut(s) 756, 1073
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 3 cut(s) 75, 438, 506
BfaI CTAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 692
BfuI GTATCC 2 cut(s) 756, 1073
BisI GCNGC 9 cut(s) 281, 284, 344, 492, 519, 562, 647, 650, 902
BlsI GCNGC 9 cut(s) 282, 285, 345, 493, 520, 563, 648, 651, 903
Bme1390I CCNGG 3 cut(s) 163, 348, 449
Bme18I GGWCC 2 cut(s) 166, 731
BmgT120I GGNCC 4 cut(s) 166, 225, 450, 731
BmiI GGNNCC 3 cut(s) 167, 291, 880
BmrFI CCNGG 3 cut(s) 163, 348, 449
BmsI GCATC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 3 cut(s) 263, 530, 662
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 872, 998
BpuMI CCSGG 1 cut(s) 449
BsaAI YACGTR 2 cut(s) 497, 1062
BsaJI CCNNGG 4 cut(s) 162, 347, 453, 811
BsaWI WCCGGW 1 cut(s) 715
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 454, 568, 764
Bse118I RCCGGY 2 cut(s) 715, 737
Bse1I ACTGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 2 cut(s) 163, 348
BseDI CCNNGG 4 cut(s) 162, 347, 453, 811
BseGI GGATG 4 cut(s) 304, 382, 640, 661
BseLI CCNNNNNNNGG 4 cut(s) 223, 454, 568, 764
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 2 cut(s) 27, 287
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 7 cut(s) 267, 270, 478, 505, 636, 658, 888
BseYI CCCAGC 2 cut(s) 78, 395
BsgI GTGCAG 2 cut(s) 477, 597
Bsh1236I CGCG 3 cut(s) 9, 38, 95
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 4 cut(s) 216, 227, 452, 674
BshNI GGYRCC 1 cut(s) 878
BshTI ACCGGT 1 cut(s) 715
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 4 cut(s) 448, 527, 716, 738
BsiWI CGTACG 1 cut(s) 497
BslFI GGGAC 2 cut(s) 114, 179
BslI CCNNNNNNNGG 4 cut(s) 223, 454, 568, 764
BsmAI GTCTC 3 cut(s) 75, 438, 506
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 114, 179
BsnI GGCC 4 cut(s) 216, 227, 452, 674
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 181, 289, 1175
BspACI CCGC 8 cut(s) 9, 32, 44, 53, 204, 286, 344, 562
BspANI GGCC 4 cut(s) 216, 227, 452, 674
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 3 cut(s) 9, 38, 95
BspLI GGNNCC 3 cut(s) 167, 291, 880
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 3 cut(s) 176, 284, 297
BspQI GCTCTTC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 603
BsrFI RCCGGY 2 cut(s) 715, 737
BsrI ACTGG 1 cut(s) 513
BssAI RCCGGY 2 cut(s) 715, 737
BssECI CCNNGG 4 cut(s) 162, 347, 453, 811
BssMI GATC 3 cut(s) 181, 289, 1175
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 163, 348
Bst4CI ACNGT 4 cut(s) 112, 339, 808, 1003
Bst6I CTCTTC 1 cut(s) 318
BstBAI YACGTR 2 cut(s) 497, 1062
BstC8I GCNNGC 3 cut(s) 42, 418, 1156
BstDEI CTNAG 3 cut(s) 270, 549, 989
BstDSI CCRYGG 1 cut(s) 811
BstENI CCTNNNNNAGG 1 cut(s) 762
BstF5I GGATG 4 cut(s) 304, 382, 640, 661
BstFNI CGCG 3 cut(s) 9, 38, 95
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 3 cut(s) 184, 292, 1178
BstMAI GTCTC 3 cut(s) 75, 438, 506
BstMBI GATC 3 cut(s) 181, 289, 1175
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 5 cut(s) 50, 470, 527, 646, 791
BstNI CCWGG 2 cut(s) 163, 348
BstNSI RCATGY 2 cut(s) 711, 1087
BstSCI CCNGG 3 cut(s) 161, 346, 447
BstUI CGCG 3 cut(s) 9, 38, 95
BstV1I GCAGC 7 cut(s) 267, 270, 478, 505, 636, 658, 888
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 214
BsuI GTATCC 2 cut(s) 756, 1073
BsuRI GGCC 4 cut(s) 216, 227, 452, 674
BtgI CCRYGG 1 cut(s) 811
BtsCI GGATG 4 cut(s) 304, 382, 640, 661
BveI ACCTGC 1 cut(s) 692
Cac8I GCNNGC 3 cut(s) 42, 418, 1156
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 2 cut(s) 715, 737
Cfr13I GGNCC 4 cut(s) 166, 225, 450, 731
CseI GACGC 2 cut(s) 44, 101
Csp6I GTAC 2 cut(s) 498, 620
CspAI ACCGGT 1 cut(s) 715
CviAII CATG 5 cut(s) 139, 708, 1045, 1076, 1084
CviQI GTAC 2 cut(s) 498, 620
DdeI CTNAG 3 cut(s) 270, 549, 989
DpnI GATC 3 cut(s) 183, 291, 1177
DpnII GATC 3 cut(s) 181, 289, 1175
DraI TTTAAA 1 cut(s) 1090
EaeI YGGCCR 2 cut(s) 214, 672
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 47, 193
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 166, 731
Eco52I CGGCCG 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 161, 346
EcoT14I CCWWGG 1 cut(s) 453
EcoT22I ATGCAT 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 5 cut(s) 142, 711, 1048, 1079, 1087
FaqI GGGAC 2 cut(s) 114, 179
FatI CATG 5 cut(s) 138, 707, 1044, 1075, 1083
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 9 cut(s) 281, 284, 344, 492, 519, 562, 647, 650, 902
FokI GGATG 4 cut(s) 311, 389, 647, 668
Fsp4HI GCNGC 9 cut(s) 281, 284, 344, 492, 519, 562, 647, 650, 902
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 39
GluI GCNGC 9 cut(s) 281, 284, 344, 492, 519, 562, 647, 650, 902
GsaI CCCAGC 2 cut(s) 82, 399
GsuI CTGGAG 3 cut(s) 263, 530, 662
HaeIII GGCC 4 cut(s) 216, 227, 452, 674
HapII CCGG 4 cut(s) 448, 527, 716, 738
HgaI GACGC 2 cut(s) 44, 101
HhaI GCGC 1 cut(s) 40
Hin1II CATG 5 cut(s) 142, 711, 1048, 1079, 1087
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 124, 609
HindII GTYRAC 2 cut(s) 124, 609
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 4, 431, 961
HpaII CCGG 4 cut(s) 448, 527, 716, 738
HphI GGTGA 3 cut(s) 67, 640, 705
Hpy166II GTNNAC 5 cut(s) 124, 151, 584, 609, 713
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 6 cut(s) 242, 362, 533, 690, 996, 1179
Hpy8I GTNNAC 5 cut(s) 124, 151, 584, 609, 713
Hpy99I CGWCG 2 cut(s) 100, 112
HpyAV CCTTC 2 cut(s) 179, 210
HpyCH4III ACNGT 4 cut(s) 112, 339, 808, 1003
HpyCH4IV ACGT 3 cut(s) 496, 828, 1061
HpyCH4V TGCA 8 cut(s) 142, 416, 494, 596, 614, 707, 868, 1101
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 470, 527, 646, 791
HpyF3I CTNAG 3 cut(s) 270, 549, 989
HpySE526I ACGT 3 cut(s) 496, 828, 1061
Hsp92II CATG 5 cut(s) 142, 711, 1048, 1079, 1087
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 181, 289, 1175
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 3 cut(s) 75, 244, 643
Lsp1109I GCAGC 7 cut(s) 267, 270, 478, 505, 636, 658, 888
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 533
MaeII ACGT 3 cut(s) 496, 828, 1061
MaeIII GTNAC 3 cut(s) 218, 846, 1105
MalI GATC 3 cut(s) 183, 291, 1177
MboI GATC 3 cut(s) 181, 289, 1175
MboII GAAGA 5 cut(s) 70, 73, 335, 434, 437
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 8 cut(s) 261, 352, 443, 474, 565, 969, 1035, 1140
MlyI GAGTC 2 cut(s) 13, 440
MmeI TCCRAC 2 cut(s) 276, 1153
Mph1103I ATGCAT 1 cut(s) 144
MroXI GAANNNNTTC 2 cut(s) 327, 386
MseI TTAA 3 cut(s) 252, 968, 1089
MslI CAYNNNNRTG 1 cut(s) 1060
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 4 cut(s) 448, 527, 716, 738
MspR9I CCNGG 3 cut(s) 163, 348, 449
MvaI CCWGG 2 cut(s) 163, 348
MvnI CGCG 3 cut(s) 9, 38, 95
MwoI GCNNNNNNNGC 5 cut(s) 50, 470, 527, 646, 791
NciI CCSGG 1 cut(s) 449
NdeII GATC 3 cut(s) 181, 289, 1175
NlaIII CATG 5 cut(s) 142, 711, 1048, 1079, 1087
NlaIV GGNNCC 3 cut(s) 167, 291, 880
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 218, 1105
NsiI ATGCAT 1 cut(s) 144
NspI RCATGY 2 cut(s) 711, 1087
PaqCI CACCTGC 1 cut(s) 692
PciI ACATGT 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 327, 386
PfeI GAWTC 1 cut(s) 961
Pfl23II CGTACG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 715
PkrI GCNGC 9 cut(s) 282, 285, 345, 493, 520, 563, 648, 651, 903
PleI GAGTC 2 cut(s) 12, 439
PpsI GAGTC 2 cut(s) 12, 439
Ppu21I YACGTR 2 cut(s) 497, 1062
PpuMI RGGWCCY 1 cut(s) 166
PscI ACATGT 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 161, 346
PspFI CCCAGC 2 cut(s) 78, 395
PspGI CCWGG 2 cut(s) 161, 346
PspLI CGTACG 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 167, 291, 880
PspPI GGNCC 4 cut(s) 166, 225, 450, 731
PspPPI RGGWCCY 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 2 cut(s) 499, 621
RsaNI GTAC 2 cut(s) 498, 620
RseI CAYNNNNRTG 1 cut(s) 1060
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 3 cut(s) 252, 968, 1089
SatI GCNGC 9 cut(s) 281, 284, 344, 492, 519, 562, 647, 650, 902
Sau3AI GATC 3 cut(s) 181, 289, 1175
Sau96I GGNCC 4 cut(s) 166, 225, 450, 731
SchI GAGTC 2 cut(s) 13, 440
ScrFI CCNGG 3 cut(s) 163, 348, 449
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 2 cut(s) 166, 731
SmiMI CAYNNNNRTG 1 cut(s) 1060
SmlI CTYRAG 2 cut(s) 851, 977
SmoI CTYRAG 2 cut(s) 851, 977
Sse9I AATT 8 cut(s) 261, 352, 443, 474, 565, 969, 1035, 1140
SsiI CCGC 8 cut(s) 9, 32, 44, 53, 204, 286, 344, 562
SspI AATATT 1 cut(s) 940
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 161, 346, 447
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 4 cut(s) 112, 339, 808, 1003
TaiI ACGT 3 cut(s) 499, 831, 1064
TaqI TCGA 3 cut(s) 117, 123, 180
TasI AATT 8 cut(s) 261, 352, 443, 474, 565, 969, 1035, 1140
TauI GCSGC 2 cut(s) 346, 564
TfiI GAWTC 1 cut(s) 961
Tru1I TTAA 3 cut(s) 252, 968, 1089
Tru9I TTAA 3 cut(s) 252, 968, 1089
TseFI GTSAC 2 cut(s) 218, 1105
TseI GCWGC 7 cut(s) 280, 283, 491, 518, 646, 649, 901
Tsp45I GTSAC 2 cut(s) 218, 1105
TspDTI ATGAA 3 cut(s) 315, 1061, 1123
TspGWI ACGGA 3 cut(s) 282, 389, 800
VpaK11BI GGWCC 2 cut(s) 166, 731
XagI CCTNNNNNAGG 1 cut(s) 762
XapI RAATTY 2 cut(s) 443, 1035
XbaI TCTAGA 1 cut(s) 532
XceI RCATGY 2 cut(s) 711, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 2 cut(s) 327, 386
XspI CTAG 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.