Rorug04G0112800

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000719
Physical Location & Seq
Forward (+)
17787812 .. 17791627
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0112800.1

Sequence Viewer

Length: 594 bp
ATGGGAGACCGAGAAAGAGAGCGAGACAGAGAACGAGACCGGGAGAGAATCCGAGACCGGGACCGAGACAGAGACAGACGCCGTGACAGAGACGACCGTGATCGTGACCGCGACCGCGACCGTGTCCGGAGCAAGAGGTCACGTACGCCGGACCGCAGCAGAGCACGCCACACGCGCTCGCCGGACTTGTACCACTCACGCTCCCTCTCCCGTTCCCGCACTCCAGAAGACCGCTCCCACCGCCGCCGCCACCACCACCGCAGCCCCTCCCCGGAGTCGCGGAAGCGTGCGCGGCGCGAGCCGACGGTGGAGGAGGAGAAGGACCGGCAGAAGGTGGTGTCGGAATTCGTGGAGGGGATTGCGAAGGAGCAGCAGAAGCAGAGCGGCGGTGGTGGAGAGGGCGGTGCGGACGAGGACGAGGTTGAGATGATGAAGAAGTTGGGGATTCCGGTAGGGTTTGATTCCACGAAAGGGAAGCCGGTGCCGGGGGCCGATGTGAGTGGTGTTAGGGCCGTCACGAAGCGCCAGCCTAGACAGTACATGAACCGCCGCGGCGGATTTAACCGGCCGTTGCCTGCAGAGCGCAATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

197

Amino Acids

23.41

Weight (kDa)

11.14

Isoelectric Point (pI)

84.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNRNP27 PF08648 138 - 193 2.5e-22 U4/U6.U5 small nuclear ribonucleoproteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 2 cut(s) 234, 384
AccII CGCG 7 cut(s) 111, 117, 175, 280, 292, 297, 552
AccIII TCCGGA 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 3 cut(s) 145, 191, 539
AfiI CCNNNNNNNGG 5 cut(s) 58, 271, 331, 471, 485
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 6 cut(s) 18, 30, 48, 60, 66, 84
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 3 cut(s) 489, 510, 566
ApeKI GCWGC 3 cut(s) 156, 261, 370
ApoI RAATTY 1 cut(s) 344
AspLEI GCGC 5 cut(s) 177, 292, 297, 525, 585
AspS9I GGNCC 5 cut(s) 61, 151, 322, 489, 510
AsuC2I CCSGG 4 cut(s) 41, 59, 272, 486
AvaII GGWCC 3 cut(s) 61, 151, 322
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 168, 273, 382
BceAI ACGGC 3 cut(s) 66, 497, 553
BcnI CCSGG 4 cut(s) 41, 59, 272, 486
BcoDI GTCTC 6 cut(s) 18, 30, 48, 60, 66, 84
BfaI CTAG 2 cut(s) 531, 592
BfmI CTRYAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 526
BisI GCNGC 9 cut(s) 157, 244, 247, 262, 293, 371, 385, 550, 553
BlsI GCNGC 9 cut(s) 158, 245, 248, 263, 294, 372, 386, 551, 554
Bme1390I CCNGG 4 cut(s) 41, 59, 272, 486
Bme18I GGWCC 3 cut(s) 61, 151, 322
BmgT120I GGNCC 5 cut(s) 61, 151, 322, 489, 510
BmiI GGNNCC 3 cut(s) 62, 483, 490
BmrFI CCNGG 4 cut(s) 41, 59, 272, 486
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 4 cut(s) 41, 59, 272, 486
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 79
BsaI GGTCTC 2 cut(s) 30, 48
BsaJI CCNNGG 3 cut(s) 270, 485, 550
BsaWI WCCGGW 2 cut(s) 126, 448
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 271, 331, 471, 485
Bse118I RCCGGY 3 cut(s) 324, 478, 564
BseAI TCCGGA 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 270, 485, 550
BseLI CCNNNNNNNGG 5 cut(s) 58, 271, 331, 471, 485
BseRI GAGGAG 2 cut(s) 326, 329
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 168, 273, 382
Bsh1236I CGCG 7 cut(s) 111, 117, 175, 280, 292, 297, 552
Bsh1285I CGRYCG 4 cut(s) 97, 115, 121, 569
BshFI GGCC 3 cut(s) 491, 512, 568
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 4 cut(s) 97, 115, 121, 569
BsiHKAI GWGCWC 1 cut(s) 166
BsiWI CGTACG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 5 cut(s) 58, 271, 331, 471, 485
BsmAI GTCTC 6 cut(s) 18, 30, 48, 60, 66, 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 3 cut(s) 491, 512, 568
Bso31I GGTCTC 2 cut(s) 30, 48
Bsp1286I GDGCHC 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 1 cut(s) 100
BspANI GGCC 3 cut(s) 491, 512, 568
BspEI TCCGGA 1 cut(s) 126
BspFNI CGCG 7 cut(s) 111, 117, 175, 280, 292, 297, 552
BspLI GGNNCC 3 cut(s) 62, 483, 490
BspMAI CTGCAG 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 2 cut(s) 30, 48
BsrBI CCGCTC 2 cut(s) 234, 384
BsrFI RCCGGY 3 cut(s) 324, 478, 564
BssAI RCCGGY 3 cut(s) 324, 478, 564
BssECI CCNNGG 3 cut(s) 270, 485, 550
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 79
Bst4CI ACNGT 4 cut(s) 98, 122, 307, 537
BstACI GRCGYC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 6 cut(s) 166, 179, 288, 299, 527, 576
BstDSI CCRYGG 1 cut(s) 550
BstFNI CGCG 7 cut(s) 111, 117, 175, 280, 292, 297, 552
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 5 cut(s) 177, 292, 297, 525, 585
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 6 cut(s) 18, 30, 48, 60, 66, 84
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 4 cut(s) 97, 115, 121, 569
BstMWI GCNNNNNNNGC 7 cut(s) 165, 174, 240, 292, 298, 376, 580
BstSCI CCNGG 4 cut(s) 39, 57, 270, 484
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 7 cut(s) 111, 117, 175, 280, 292, 297, 552
BstV1I GCAGC 3 cut(s) 168, 273, 382
BstV2I GAAGAC 1 cut(s) 234
BstZI CGGCCG 1 cut(s) 566
BsuRI GGCC 3 cut(s) 491, 512, 568
BtgI CCRYGG 1 cut(s) 550
Cac8I GCNNGC 6 cut(s) 166, 179, 288, 299, 527, 576
CfoI GCGC 5 cut(s) 177, 292, 297, 525, 585
Cfr10I RCCGGY 3 cut(s) 324, 478, 564
Cfr13I GGNCC 5 cut(s) 61, 151, 322, 489, 510
Cfr42I CCGCGG 1 cut(s) 553
CpoI CGGWCCG 1 cut(s) 151
CseI GACGC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 144, 190, 538
CspI CGGWCCG 1 cut(s) 151
CviAII CATG 1 cut(s) 541
CviJI RGCY 7 cut(s) 264, 301, 478, 491, 512, 529, 568
CviKI_1 RGCY 7 cut(s) 264, 301, 478, 491, 512, 529, 568
CviQI GTAC 3 cut(s) 144, 190, 538
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 566
EagI CGGCCG 1 cut(s) 566
EciI GGCGGA 1 cut(s) 570
EclXI CGGCCG 1 cut(s) 566
Eco31I GGTCTC 2 cut(s) 30, 48
Eco47I GGWCC 3 cut(s) 61, 151, 322
Eco52I CGGCCG 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 1 cut(s) 544
FaiI YATR 1 cut(s) 542
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 540
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 9 cut(s) 157, 244, 247, 262, 293, 371, 385, 550, 553
Fsp4HI GCNGC 9 cut(s) 157, 244, 247, 262, 293, 371, 385, 550, 553
FspBI CTAG 2 cut(s) 531, 592
GlaI GCGC 5 cut(s) 176, 291, 296, 524, 584
GluI GCNGC 9 cut(s) 157, 244, 247, 262, 293, 371, 385, 550, 553
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 3 cut(s) 491, 512, 568
HgaI GACGC 1 cut(s) 87
HhaI GCGC 5 cut(s) 177, 292, 297, 525, 585
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 5 cut(s) 175, 290, 295, 523, 583
HinP1I GCGC 5 cut(s) 175, 290, 295, 523, 583
HinfI GANTC 4 cut(s) 48, 275, 445, 461
Hpy188I TCNGA 2 cut(s) 53, 343
Hpy188III TCNNGA 4 cut(s) 104, 127, 224, 517
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 313, 325, 358
HpyCH4III ACNGT 4 cut(s) 98, 122, 307, 537
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 7 cut(s) 165, 174, 240, 292, 298, 376, 580
HpySE526I ACGT 1 cut(s) 142
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 5 cut(s) 175, 290, 295, 523, 583
Kpn2I TCCGGA 1 cut(s) 126
KspI CCGCGG 1 cut(s) 553
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 4 cut(s) 129, 206, 239, 367
Lsp1109I GCAGC 3 cut(s) 168, 273, 382
MaeI CTAG 2 cut(s) 531, 592
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 4 cut(s) 83, 104, 138, 514
MalI GATC 1 cut(s) 102
MbiI CCGCTC 2 cut(s) 234, 384
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 239, 445
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 344
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 9 cut(s) 129, 215, 277, 304, 307, 346, 391, 406, 412
MroI TCCGGA 1 cut(s) 126
MseI TTAA 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 552
MspR9I CCNGG 4 cut(s) 41, 59, 272, 486
MteI GCGCNGCGC 1 cut(s) 293
MvnI CGCG 7 cut(s) 111, 117, 175, 280, 292, 297, 552
MwoI GCNNNNNNNGC 7 cut(s) 165, 174, 240, 292, 298, 376, 580
NciI CCSGG 4 cut(s) 41, 59, 272, 486
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 3 cut(s) 62, 483, 490
NmuCI GTSAC 4 cut(s) 83, 104, 138, 514
PfeI GAWTC 3 cut(s) 48, 445, 461
Pfl23II CGTACG 1 cut(s) 143
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 9 cut(s) 158, 245, 248, 263, 294, 372, 386, 551, 554
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 143
PspLI CGTACG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 62, 483, 490
PspPI GGNCC 5 cut(s) 61, 151, 322, 489, 510
PstI CTGCAG 1 cut(s) 580
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 3 cut(s) 145, 191, 539
RsaNI GTAC 3 cut(s) 144, 190, 538
Rsr2I CGGWCCG 1 cut(s) 151
RsrII CGGWCCG 1 cut(s) 151
SacII CCGCGG 1 cut(s) 553
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 9 cut(s) 157, 244, 247, 262, 293, 371, 385, 550, 553
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 5 cut(s) 61, 151, 322, 489, 510
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 4 cut(s) 41, 59, 272, 486
SduI GDGCHC 1 cut(s) 166
SetI ASST 4 cut(s) 140, 145, 336, 423
SfcI CTRYAG 1 cut(s) 576
Sfr303I CCGCGG 1 cut(s) 553
SgrBI CCGCGG 1 cut(s) 553
SinI GGWCC 3 cut(s) 61, 151, 322
Sse9I AATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 531, 592
StyD4I CCNGG 4 cut(s) 39, 57, 270, 484
TaaI ACNGT 4 cut(s) 98, 122, 307, 537
TaiI ACGT 1 cut(s) 145
TaqII GACCGA 2 cut(s) 24, 78
TasI AATT 1 cut(s) 344
TatI WGTACW 1 cut(s) 537
TauI GCSGC 6 cut(s) 246, 249, 295, 387, 552, 555
TfiI GAWTC 3 cut(s) 48, 445, 461
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseFI GTSAC 4 cut(s) 83, 104, 138, 514
TseI GCWGC 3 cut(s) 156, 261, 370
Tsp45I GTSAC 4 cut(s) 83, 104, 138, 514
TspDTI ATGAA 2 cut(s) 446, 557
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 3 cut(s) 61, 151, 322
XapI RAATTY 1 cut(s) 344
XspI CTAG 2 cut(s) 531, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.