Rw4G002190

magnesium transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
3990482 .. 3994794
4313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002190.1

Sequence Viewer

Length: 1206 bp
ATGACTCGAGGAGGAGGAGGAGGAGACGGGGAAGCCGTTGCGGCGGTGGCGGTGGTGGACCCTCAGGCGGTGGTGGCGGTGAAGAAGAAGTCGTCTCGGAGCTGGGTTTTGCTGGACGCGACGGGACAAGCGACGGTGTTGGATGTGGACAAGTATGCGATCATGCACAGAGTCCACATTCACGCTCGGGATCTCCGCATTGTCGACCCTCTGCTCTCTTACCCTTCCGCCATTCTCGGACGTGACAGGGCTATTGTTCTCAATCTGGAGCATATTAAGGCGATAATTACTGCTGAAGAGGTGCTGCTTCGGGATCCGTTGGATGAAAATGTTATTCCTGTTGTTGAAGAGCTTCAAAGACGGTTGCCTCCTGTTAATTCCAATCGTGAAAATCAAACAGATGGGAGAGAGTTCCCTGCTGGGCACAATGATGTTGACGCGGGTGAAGAAGATGAGTCTCCATTTGAATTCCGGGCCTTGGAGGTAGCTTTGGAAGCAATTTGTAGTTTTCTTGCTGCACGTACGACAGAACTGGAGACTGCTGCTTATCCGGCTCTAGATTTGCTTACCTCTAAGATTAGTAGCCGCAATTTGGATAGGGTTCGTAAATTGAAAAGTGCAATGACAAGGTTGACTGCACGGGTCCAAAAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGTGGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGCCTCCCCTACCATAGGCTCAAAAATATCACGGGCAAGTAGAGCAAGTATGATAACTGTTCGTGGAGATGAGAATGACGTTGAGGAACTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGCTGCGTGAATATATTGATGATACGGAGGATTACATAAATATTCAGCTTGATAACCATAGGAATCAGTTAATTCAGCTTGAGCTTTTTCTTAGTTCTGGAACTGTTACCTTATCCATATATTCTTTGGTGGCTGGAATTTTTGGCATGAATATCCCATATACGTGGAACGATGGTCATGGATACATGTTTAAATGGGTTTGCATTGTCACCGGAATAGTATGTTTCTTTGTTTTCATAGTAATTGTAGCATATGCTCGCCACAAAGGGTTGGTTGGATCGTGA

Protein Analysis

401

Amino Acids

44.42

Weight (kDa)

4.97

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRS2-like PF22099 38 - 240 8.8e-26 Magnesium transporter MRS2-like
MRS2-like PF22099 281 - 328 6.6e-08 Magnesium transporter MRS2-like
CorA PF01544 289 - 389 6.6e-08 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 902
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 119, 440
AciI CCGC 9 cut(s) 41, 44, 50, 68, 77, 196, 228, 440, 586
AclWI GGATC 3 cut(s) 198, 308, 321
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 2 cut(s) 467, 1059
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 4 cut(s) 67, 478, 592, 788
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 6 cut(s) 347, 356, 467, 613, 866, 910
AjiI CACGTC 1 cut(s) 242
AluBI AGCT 9 cut(s) 102, 352, 488, 664, 673, 920, 970, 1000, 1006
AluI AGCT 9 cut(s) 102, 352, 488, 664, 673, 920, 970, 1000, 1006
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 4 cut(s) 18, 99, 462, 530
AlwI GGATC 3 cut(s) 198, 308, 321
AlwNI CAGNNNCTG 1 cut(s) 676
Ama87I CYCGRG 3 cut(s) 6, 186, 665
AoxI GGCC 2 cut(s) 474, 696
ApeKI GCWGC 6 cut(s) 304, 515, 542, 670, 673, 925
ApoI RAATTY 2 cut(s) 467, 1059
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 4 cut(s) 58, 474, 643, 755
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 5 cut(s) 91, 455, 664, 729, 1123
AvaI CYCGRG 3 cut(s) 6, 186, 665
AvaII GGWCC 3 cut(s) 58, 643, 755
AxyI CCTNAGG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 426
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 6 cut(s) 291, 502, 529, 660, 682, 912
BccI CCATC 3 cut(s) 395, 893, 1088
BceAI ACGGC 1 cut(s) 20
BciVI GTATCC 2 cut(s) 780, 1097
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 4 cut(s) 18, 99, 462, 530
BfaI CTAG 1 cut(s) 557
BfuI GTATCC 2 cut(s) 780, 1097
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 8 cut(s) 42, 305, 516, 543, 586, 671, 674, 926
BlsI GCNGC 8 cut(s) 43, 306, 517, 544, 587, 672, 675, 927
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 3 cut(s) 58, 643, 755
BmeT110I CYCGRG 3 cut(s) 6, 186, 665
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 4 cut(s) 58, 474, 643, 755
BmiI GGNNCC 4 cut(s) 60, 315, 644, 904
BmrFI CCNGG 1 cut(s) 473
BpmI CTGGAG 3 cut(s) 287, 554, 896
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 1 cut(s) 473
BsaAI YACGTR 2 cut(s) 521, 1086
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 1133
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 478, 592, 788
Bse1I ACTGG 3 cut(s) 537, 740, 879
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 4 cut(s) 148, 328, 664, 685
BseLI CCNNNNNNNGG 4 cut(s) 67, 478, 592, 788
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 3 cut(s) 537, 740, 879
BseRI GAGGAG 5 cut(s) 24, 27, 30, 33, 36
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 6 cut(s) 291, 502, 529, 660, 682, 912
BseYI CCCAGC 2 cut(s) 102, 419
BsgI GTGCAG 2 cut(s) 501, 621
Bsh1236I CGCG 2 cut(s) 119, 440
BshFI GGCC 2 cut(s) 476, 698
BshNI GGYRCC 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 3 cut(s) 6, 186, 665
BsiSI CCGG 3 cut(s) 472, 551, 1134
BsiWI CGTACG 1 cut(s) 521
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 4 cut(s) 67, 478, 592, 788
BsmAI GTCTC 4 cut(s) 18, 99, 462, 530
BsmBI CGTCTC 2 cut(s) 18, 99
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 2 cut(s) 476, 698
BsoBI CYCGRG 3 cut(s) 6, 186, 665
Bsp1286I GDGCHC 2 cut(s) 426, 666
Bsp143I GATC 4 cut(s) 159, 190, 313, 1199
BspACI CCGC 9 cut(s) 41, 44, 50, 68, 77, 196, 228, 440, 586
BspANI GGCC 2 cut(s) 476, 698
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 2 cut(s) 119, 440
BspLI GGNNCC 4 cut(s) 60, 315, 644, 904
BspPI GGATC 3 cut(s) 198, 308, 321
BspQI GCTCTTC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 902
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 3 cut(s) 537, 740, 879
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 4 cut(s) 159, 190, 313, 1199
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 4 cut(s) 136, 363, 832, 1027
Bst6I CTCTTC 2 cut(s) 291, 342
BstBAI YACGTR 2 cut(s) 521, 1086
BstC8I GCNNGC 1 cut(s) 1180
BstDEI CTNAG 3 cut(s) 63, 573, 1013
BstENI CCTNNNNNAGG 1 cut(s) 786
BstF5I GGATG 4 cut(s) 148, 328, 664, 685
BstFNI CGCG 2 cut(s) 119, 440
BstKTI GATC 4 cut(s) 162, 193, 316, 1202
BstMAI GTCTC 4 cut(s) 18, 99, 462, 530
BstMBI GATC 4 cut(s) 159, 190, 313, 1199
BstMWI GCNNNNNNNGC 7 cut(s) 41, 47, 74, 494, 551, 670, 815
BstNSI RCATGY 2 cut(s) 735, 1111
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 2 cut(s) 119, 440
BstV1I GCAGC 6 cut(s) 291, 502, 529, 660, 682, 912
BstX2I RGATCY 2 cut(s) 190, 313
BstXI CCANNNNNNTGG 1 cut(s) 1086
BstYI RGATCY 2 cut(s) 190, 313
Bsu36I CCTNAGG 1 cut(s) 63
BsuI GTATCC 2 cut(s) 780, 1097
BsuRI GGCC 2 cut(s) 476, 698
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 4 cut(s) 148, 328, 664, 685
Cac8I GCNNGC 1 cut(s) 1180
CaiI CAGNNNCTG 1 cut(s) 676
Cfr13I GGNCC 4 cut(s) 58, 474, 643, 755
CseI GACGC 2 cut(s) 125, 446
Csp6I GTAC 1 cut(s) 522
CviAII CATG 5 cut(s) 163, 732, 1069, 1100, 1108
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 3 cut(s) 63, 573, 1013
DpnI GATC 4 cut(s) 161, 192, 315, 1201
DpnII GATC 4 cut(s) 159, 190, 313, 1199
DraI TTTAAA 1 cut(s) 1114
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 291, 342
EarI CTCTTC 2 cut(s) 291, 342
EciI GGCGGA 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 666
Eco47I GGWCC 3 cut(s) 58, 643, 755
Eco53kI GAGCTC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 63
Eco88I CYCGRG 3 cut(s) 6, 186, 665
EcoICRI GAGCTC 1 cut(s) 664
EcoNI CCTNNNNNAGG 1 cut(s) 786
EcoRI GAATTC 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 2 cut(s) 18, 99
FaeI CATG 5 cut(s) 166, 735, 1072, 1103, 1111
FaqI GGGAC 1 cut(s) 138
FatI CATG 5 cut(s) 162, 731, 1068, 1099, 1107
FauI CCCGC 1 cut(s) 433
FauNDI CATATG 1 cut(s) 1174
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 8 cut(s) 42, 305, 516, 543, 586, 671, 674, 926
FokI GGATG 4 cut(s) 155, 335, 671, 692
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 8 cut(s) 42, 305, 516, 543, 586, 671, 674, 926
FspBI CTAG 1 cut(s) 557
GluI GCNGC 8 cut(s) 42, 305, 516, 543, 586, 671, 674, 926
GsaI CCCAGC 2 cut(s) 106, 423
GsuI CTGGAG 3 cut(s) 287, 554, 896
HaeIII GGCC 2 cut(s) 476, 698
HapII CCGG 3 cut(s) 472, 551, 1134
HgaI GACGC 2 cut(s) 125, 446
Hin1II CATG 5 cut(s) 166, 735, 1072, 1103, 1111
HincII GTYRAC 3 cut(s) 205, 436, 633
HindII GTYRAC 3 cut(s) 205, 436, 633
HinfI GANTC 4 cut(s) 4, 171, 455, 985
HpaII CCGG 3 cut(s) 472, 551, 1134
HphI GGTGA 5 cut(s) 91, 455, 664, 729, 1123
Hpy166II GTNNAC 7 cut(s) 58, 148, 175, 205, 436, 633, 737
Hpy188I TCNGA 2 cut(s) 99, 239
Hpy188III TCNNGA 8 cut(s) 188, 266, 311, 386, 557, 714, 1020, 1203
Hpy8I GTNNAC 7 cut(s) 58, 148, 175, 205, 436, 633, 737
Hpy99I CGWCG 2 cut(s) 124, 136
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 4 cut(s) 136, 363, 832, 1027
HpyCH4IV ACGT 4 cut(s) 241, 520, 852, 1085
HpyCH4V TGCA 7 cut(s) 166, 518, 620, 638, 731, 892, 1125
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 47, 74, 494, 551, 670, 815
HpyF3I CTNAG 3 cut(s) 63, 573, 1013
HpySE526I ACGT 4 cut(s) 241, 520, 852, 1085
Hsp92II CATG 5 cut(s) 166, 735, 1072, 1103, 1111
Kzo9I GATC 4 cut(s) 159, 190, 313, 1199
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 99, 268
Lsp1109I GCAGC 6 cut(s) 291, 502, 529, 660, 682, 912
MaeI CTAG 1 cut(s) 557
MaeII ACGT 4 cut(s) 241, 520, 852, 1085
MaeIII GTNAC 4 cut(s) 242, 870, 1027, 1129
MalI GATC 4 cut(s) 161, 192, 315, 1201
MboI GATC 4 cut(s) 159, 190, 313, 1199
MboII GAAGA 6 cut(s) 94, 97, 308, 359, 458, 461
MfeI CAATTG 1 cut(s) 763
MflI RGATCY 2 cut(s) 190, 313
MhlI GDGCHC 2 cut(s) 426, 666
MlyI GAGTC 2 cut(s) 180, 464
MmeI TCCRAC 3 cut(s) 120, 300, 1177
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 4 cut(s) 276, 375, 992, 1113
MslI CAYNNNNRTG 2 cut(s) 429, 1084
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 3 cut(s) 472, 551, 1134
MspR9I CCNGG 1 cut(s) 473
MunI CAATTG 1 cut(s) 763
MvnI CGCG 2 cut(s) 119, 440
MwoI GCNNNNNNNGC 7 cut(s) 41, 47, 74, 494, 551, 670, 815
NciI CCSGG 1 cut(s) 473
NdeI CATATG 1 cut(s) 1174
NdeII GATC 4 cut(s) 159, 190, 313, 1199
NlaIII CATG 5 cut(s) 166, 735, 1072, 1103, 1111
NlaIV GGNNCC 4 cut(s) 60, 315, 644, 904
NmuCI GTSAC 2 cut(s) 242, 1129
NspI RCATGY 2 cut(s) 735, 1111
PaeR7I CTCGAG 2 cut(s) 6, 665
PciI ACATGT 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 128
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 985
Pfl23II CGTACG 1 cut(s) 521
PkrI GCNGC 8 cut(s) 43, 306, 517, 544, 587, 672, 675, 927
PleI GAGTC 2 cut(s) 179, 463
PpsI GAGTC 2 cut(s) 179, 463
Ppu21I YACGTR 2 cut(s) 521, 1086
PscI ACATGT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 666
PspFI CCCAGC 2 cut(s) 102, 419
PspLI CGTACG 1 cut(s) 521
PspN4I GGNNCC 4 cut(s) 60, 315, 644, 904
PspPI GGNCC 4 cut(s) 58, 474, 643, 755
PspXI VCTCGAGB 2 cut(s) 6, 665
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 190, 313
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 2 cut(s) 429, 1084
SacI GAGCTC 1 cut(s) 666
SalI GTCGAC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 4 cut(s) 276, 375, 992, 1113
SatI GCNGC 8 cut(s) 42, 305, 516, 543, 586, 671, 674, 926
Sau3AI GATC 4 cut(s) 159, 190, 313, 1199
Sau96I GGNCC 4 cut(s) 58, 474, 643, 755
SchI GAGTC 2 cut(s) 180, 464
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 2 cut(s) 426, 666
Sfr274I CTCGAG 2 cut(s) 6, 665
SinI GGWCC 3 cut(s) 58, 643, 755
SlaI CTCGAG 2 cut(s) 6, 665
SmiMI CAYNNNNRTG 2 cut(s) 429, 1084
SmlI CTYRAG 3 cut(s) 6, 665, 1001
SmoI CTYRAG 3 cut(s) 6, 665, 1001
SsiI CCGC 9 cut(s) 41, 44, 50, 68, 77, 196, 228, 440, 586
SspI AATATT 1 cut(s) 964
SspMI CTAG 1 cut(s) 557
SstI GAGCTC 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 4 cut(s) 136, 363, 832, 1027
TaiI ACGT 4 cut(s) 244, 523, 855, 1088
TaqI TCGA 3 cut(s) 7, 204, 666
TauI GCSGC 2 cut(s) 44, 588
TfiI GAWTC 1 cut(s) 985
Tru1I TTAA 4 cut(s) 276, 375, 992, 1113
Tru9I TTAA 4 cut(s) 276, 375, 992, 1113
TseFI GTSAC 2 cut(s) 242, 1129
TseI GCWGC 6 cut(s) 304, 515, 542, 670, 673, 925
Tsp45I GTSAC 2 cut(s) 242, 1129
TspDTI ATGAA 3 cut(s) 339, 1085, 1147
TspGWI ACGGA 2 cut(s) 306, 962
VpaK11BI GGWCC 3 cut(s) 58, 643, 755
XagI CCTNNNNNAGG 1 cut(s) 786
XapI RAATTY 2 cut(s) 467, 1059
XbaI TCTAGA 1 cut(s) 556
XceI RCATGY 2 cut(s) 735, 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XhoI CTCGAG 2 cut(s) 6, 665
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.