Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

12461633 .. 12463959

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACCAAGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTTGAACAGCTACTTGACGATGACGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTTTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCTAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGGTATATAAATATTGTGATTCCATTTCTTCTTACCAACTGCGTGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTGTTTCTGAGTTCCGGAACTGTTTGTGTGTCTATATATTCTTTGGTGGCTGCAATATTTGGCATGAACATTCCATATACATGGAACGAAAATCATGAGCACGTATTCAAATGGGCGGTATGTTTCCCTCCATGTTTTGGTATTTTGATTTTATGTAGTACACTCAGACGACTGTTTGTTTCAGTTTCTGTTGTGGGAGTAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

208

Amino Acids

23.59

Weight (kDa)

4.59

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	75
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	26, 47, 278, 289, 529
AjiI	CACGTC	1 cut(s)	232
AluBI	AGCT	7 cut(s)	52, 191, 241, 385, 406, 415, 421
AluI	AGCT	7 cut(s)	52, 191, 241, 385, 406, 415, 421
Alw21I	GWGCWC	2 cut(s)	136, 522
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	2 cut(s)	75, 258
ApeKI	GCWGC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	105
AsuNHI	GCTAGC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	136, 522
BbvI	GCAGC	1 cut(s)	457
BciVI	GTATCC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	192, 416
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	232
BmtI	GCTAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	523
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
BseAI	TCCGGA	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	43, 378
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	419, 598
BseRI	GAGGAG	2 cut(s)	236, 251
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	2 cut(s)	77, 260
BsiHKAI	GWGCWC	2 cut(s)	136, 522
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	77, 260
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	136, 522
Bsp13I	TCCGGA	1 cut(s)	434
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	2 cut(s)	77, 260
BspCNI	CTCAG	2 cut(s)	420, 597
BspEI	TCCGGA	1 cut(s)	434
BspHI	TCATGA	1 cut(s)	514
BspOI	GCTAGC	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	300
Bst4CI	ACNGT	4 cut(s)	214, 304, 442, 594
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	428, 584, 624
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	43, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 412
BstV1I	GCAGC	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	77, 260
BtgI	CCRYGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	43, 378
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	5 cut(s)	73, 484, 501, 515, 552
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	3 cut(s)	428, 584, 624
EaeI	YGGCCR	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	254
FaeI	CATG	5 cut(s)	76, 487, 504, 518, 555
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	5 cut(s)	72, 483, 500, 514, 551
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	50, 365
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	192, 416
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	77, 260
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	5 cut(s)	76, 487, 504, 518, 555
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	125, 320, 400
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	2 cut(s)	12, 581
Hpy188I	TCNGA	3 cut(s)	399, 429, 587
Hpy188III	TCNNGA	5 cut(s)	93, 186, 218, 435, 515
Hpy8I	GTNNAC	2 cut(s)	12, 581
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	4 cut(s)	214, 304, 442, 594
HpyCH4IV	ACGT	3 cut(s)	231, 284, 522
HpyCH4V	TGCA	2 cut(s)	271, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 412
HpyF3I	CTNAG	3 cut(s)	428, 584, 624
HpySE526I	ACGT	3 cut(s)	231, 284, 522
Hsp92II	CATG	5 cut(s)	76, 487, 504, 518, 555
Kpn2I	TCCGGA	1 cut(s)	434
LmnI	GCTCC	2 cut(s)	139, 238
LpnPI	CCDG	7 cut(s)	114, 129, 181, 199, 203, 395, 448
Lsp1109I	GCAGC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	192, 416
MaeII	ACGT	3 cut(s)	231, 284, 522
MaeIII	GTNAC	3 cut(s)	122, 205, 619
MboII	GAAGA	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	136, 522
MluCI	AATT	4 cut(s)	139, 273, 293, 408
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	163, 214, 229, 250, 358, 558
MroI	TCCGGA	1 cut(s)	434
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	499
MspI	CCGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	197, 412
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	5 cut(s)	76, 487, 504, 518, 555
NmuCI	GTSAC	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	320, 400
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	523
PspXI	VCTCGAGB	1 cut(s)	254
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PstNI	CAGNNNCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	471
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	136, 522
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	2 cut(s)	242, 254
SmoI	CTYRAG	2 cut(s)	242, 254
Sse9I	AATT	4 cut(s)	139, 273, 293, 408
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	2 cut(s)	314, 477
SspMI	CTAG	2 cut(s)	192, 416
StuI	AGGCCT	1 cut(s)	260
TaaI	ACNGT	4 cut(s)	214, 304, 442, 594
TaiI	ACGT	3 cut(s)	234, 287, 525
TaqI	TCGA	1 cut(s)	255
TasI	AATT	4 cut(s)	139, 273, 293, 408
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	2 cut(s)	320, 400
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	54, 500
Van91I	CCANNNNNTGG	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	2 cut(s)	192, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.