Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005115.1

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

26249 .. 28120

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005115.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgattgctttggaaatggctcgagatgggtccctagttaatttggagactcaagctcaagctaacaagaagactgcagctttaaggagctggatttcattggaccaagatggccaaggaaccgttttggatttggacaagtatgctattatgcgccgagttaacattcacgctcgagatcttcggcttcttgatccattgctatcctatccttccacaattttgggcagagagagagtcattgttctcaatttggagcacatcaaagcaataatcacagcggaggaggtattgcttagggacccatttgatgataatgtgctgcctattgttgaggaacttcaaagacgtttgcctccgacaagtaccaatttcaatggcccaggagaagaagaagactccgggttacaaaaagatgttgaaaccggtgaagatgatgattttccatttgaattccgggcattagaagttgcactagaagctatttgtacttctcttgatgcttgcacaagagaactagagagtgatgcttatccagctttagatgagcttacctccaagatcagcagtcgtaatttggatcgggtgcgtaagctgaagagtgcaatgaccaggttgacaaatcgggttcaaaaggtaagggatgaactcgaacagctacttgacgatgacgacgacatggctgacctttacttatcaagaaagttggttgggacttcacctgtgagtgactctggtgctccaaattggtctctcgcctctcctactataaccataggctctaaagtatccagagccagcagggcaagtgtaacaacagttcaggaggagaatgacgtggatgagcttgagatgttgctcgattttcttaggatttgtactcttgttagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

297

Amino Acids

33.19

Weight (kDa)

4.52

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	188, 588
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	367, 490, 880
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	5 cut(s)	344, 376, 422, 452, 632
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	2 cut(s)	382, 611
Alw21I	GWGCWC	2 cut(s)	261, 742
Alw26I	GTCTC	2 cut(s)	41, 756
AlwI	GGATC	2 cut(s)	188, 588
Ama87I	CYCGRG	2 cut(s)	21, 174
AoxI	GGCC	2 cut(s)	112, 379
ApeKI	GCWGC	2 cut(s)	77, 322
ApoI	RAATTY	1 cut(s)	452
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	4 cut(s)	30, 103, 301, 380
AsuC2I	CCSGG	2 cut(s)	403, 458
AsuHPI	GGTGA	2 cut(s)	440, 711
AvaI	CYCGRG	2 cut(s)	21, 174
AvaII	GGWCC	3 cut(s)	30, 103, 301
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	77, 402
Bbv12I	GWGCWC	2 cut(s)	261, 742
BbvI	GCAGC	2 cut(s)	89, 309
BccI	CCATC	2 cut(s)	20, 104
BciT130I	CCWGG	2 cut(s)	384, 613
BciVI	GTATCC	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	403, 458
BcoDI	GTCTC	2 cut(s)	41, 756
BfaI	CTAG	3 cut(s)	35, 476, 518
BfmI	CTRYAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	799
BglI	GCCNNNNNGGC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	2 cut(s)	78, 323
BlsI	GCNGC	2 cut(s)	79, 324
Bme1390I	CCNGG	4 cut(s)	384, 403, 458, 613
Bme18I	GGWCC	3 cut(s)	30, 103, 301
BmeT110I	CYCGRG	2 cut(s)	21, 174
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	4 cut(s)	30, 103, 301, 380
BmiI	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
BmrFI	CCNGG	4 cut(s)	384, 403, 458, 613
BmsI	GCATC	2 cut(s)	490, 517
BpiI	GAAGAC	2 cut(s)	77, 402
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	3 cut(s)	36, 42, 869
BpuMI	CCSGG	2 cut(s)	403, 458
BsaBI	GATNNNNATC	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	2 cut(s)	115, 382
BsaWI	WCCGGW	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	197, 612
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	384, 613
BseDI	CCNNGG	2 cut(s)	115, 382
BseGI	GGATG	2 cut(s)	649, 847
BseJI	GATNNNNATC	1 cut(s)	531
BseMI	GCAATG	2 cut(s)	197, 612
BseRI	GAGGAG	2 cut(s)	299, 842
BseXI	GCAGC	2 cut(s)	89, 309
BshFI	GGCC	2 cut(s)	114, 381
BshTI	ACCGGT	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	261, 742
BsiHKCI	CYCGRG	2 cut(s)	21, 174
BsiSI	CCGG	3 cut(s)	402, 426, 457
BslFI	GGGAC	3 cut(s)	16, 314, 727
BsmAI	GTCTC	2 cut(s)	41, 756
BsmFI	GGGAC	3 cut(s)	16, 314, 727
BsnI	GGCC	2 cut(s)	114, 381
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	2 cut(s)	21, 174
Bsp1286I	GDGCHC	2 cut(s)	261, 742
Bsp143I	GATC	4 cut(s)	178, 193, 561, 580
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	114, 381
BspLI	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	2 cut(s)	188, 588
BspTNI	GGTCTC	1 cut(s)	756
BsrDI	GCAATG	2 cut(s)	197, 612
BsrFI	RCCGGY	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	115, 382
BssMI	GATC	4 cut(s)	178, 193, 561, 580
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	384, 613
Bst4CI	ACNGT	2 cut(s)	124, 820
Bst6I	CTCTTC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	505, 799
BstDEI	CTNAG	2 cut(s)	296, 869
BstF5I	GGATG	2 cut(s)	649, 847
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	181, 196, 564, 583
BstMAI	GTCTC	2 cut(s)	41, 756
BstMBI	GATC	4 cut(s)	178, 193, 561, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 536, 803
BstNI	CCWGG	2 cut(s)	384, 613
BstSCI	CCNGG	4 cut(s)	382, 401, 456, 611
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	89, 309
BstV2I	GAAGAC	2 cut(s)	77, 402
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	2 cut(s)	114, 381
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	2 cut(s)	649, 847
Cac8I	GCNNGC	2 cut(s)	505, 799
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	4 cut(s)	30, 103, 301, 380
CsiI	ACCWGGT	1 cut(s)	611
Csp6I	GTAC	3 cut(s)	366, 489, 879
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	1 cut(s)	679
CviQI	GTAC	3 cut(s)	366, 489, 879
DdeI	CTNAG	2 cut(s)	296, 869
DpnI	GATC	4 cut(s)	180, 195, 563, 582
DpnII	GATC	4 cut(s)	178, 193, 561, 580
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	756
Eco47I	GGWCC	3 cut(s)	30, 103, 301
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	2 cut(s)	21, 174
EcoO109I	RGGNCCY	2 cut(s)	30, 301
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	382, 611
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	682
FaiI	YATR	5 cut(s)	144, 152, 680, 770, 776
FaqI	GGGAC	3 cut(s)	16, 314, 727
FatI	CATG	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	78, 323
FokI	GGATG	2 cut(s)	656, 854
Fsp4HI	GCNGC	2 cut(s)	78, 323
FspBI	CTAG	3 cut(s)	35, 476, 518
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	78, 323
HaeIII	GGCC	2 cut(s)	114, 381
HapII	CCGG	3 cut(s)	402, 426, 457
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	682
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	2 cut(s)	163, 618
HindII	GTYRAC	2 cut(s)	163, 618
HinfI	GANTC	4 cut(s)	49, 237, 398, 731
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	3 cut(s)	402, 426, 457
HphI	GGTGA	2 cut(s)	440, 711
Hpy166II	GTNNAC	2 cut(s)	163, 618
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	7 cut(s)	23, 176, 191, 497, 699, 792, 824
Hpy8I	GTNNAC	2 cut(s)	163, 618
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	2 cut(s)	124, 820
HpyCH4IV	ACGT	2 cut(s)	349, 837
HpyCH4V	TGCA	4 cut(s)	77, 473, 507, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 536, 803
HpyF3I	CTNAG	2 cut(s)	296, 869
HpySE526I	ACGT	2 cut(s)	349, 837
Hsp92II	CATG	1 cut(s)	682
HspAI	GCGC	1 cut(s)	154
KflI	GGGWCCC	2 cut(s)	30, 301
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	178, 193, 561, 580
LmnI	GCTCC	3 cut(s)	87, 256, 745
Lsp1109I	GCAGC	2 cut(s)	89, 309
LweI	GCATC	2 cut(s)	490, 517
MabI	ACCWGGT	1 cut(s)	611
MaeI	CTAG	3 cut(s)	35, 476, 518
MaeII	ACGT	2 cut(s)	349, 837
MaeIII	GTNAC	3 cut(s)	405, 728, 811
MalI	GATC	4 cut(s)	180, 195, 563, 582
MboI	GATC	4 cut(s)	178, 193, 561, 580
MboII	GAAGA	7 cut(s)	82, 173, 401, 404, 407, 443, 610
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	261, 742
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	7 cut(s)	40, 219, 250, 370, 452, 574, 745
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	4 cut(s)	43, 246, 392, 725
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	7 cut(s)	277, 280, 328, 366, 565, 769, 820
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	4 cut(s)	39, 83, 162, 892
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	3 cut(s)	402, 426, 457
MspR9I	CCNGG	4 cut(s)	384, 403, 458, 613
MvaI	CCWGG	2 cut(s)	384, 613
MwoI	GCNNNNNNNGC	3 cut(s)	479, 536, 803
NciI	CCSGG	2 cut(s)	403, 458
NdeII	GATC	4 cut(s)	178, 193, 561, 580
NlaIII	CATG	1 cut(s)	682
NlaIV	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	728
PaeR7I	CTCGAG	2 cut(s)	21, 174
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	79, 324
PleI	GAGTC	4 cut(s)	43, 245, 392, 725
PpsI	GAGTC	4 cut(s)	43, 245, 392, 725
PpuMI	RGGWCCY	2 cut(s)	30, 301
Psp5II	RGGWCCY	2 cut(s)	30, 301
Psp6I	CCWGG	2 cut(s)	382, 611
PspGI	CCWGG	2 cut(s)	382, 611
PspN4I	GGNNCC	5 cut(s)	31, 32, 121, 302, 303
PspPI	GGNCC	4 cut(s)	30, 103, 301, 380
PspPPI	RGGWCCY	2 cut(s)	30, 301
PsrI	GAACNNNNNNTAC	2 cut(s)	804, 836
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	367, 490, 880
RsaNI	GTAC	3 cut(s)	366, 489, 879
SaqAI	TTAA	4 cut(s)	39, 83, 162, 892
SatI	GCNGC	2 cut(s)	78, 323
Sau3AI	GATC	4 cut(s)	178, 193, 561, 580
Sau96I	GGNCC	4 cut(s)	30, 103, 301, 380
SchI	GAGTC	4 cut(s)	43, 246, 392, 725
ScrFI	CCNGG	4 cut(s)	384, 403, 458, 613
SduI	GDGCHC	2 cut(s)	261, 742
SexAI	ACCWGGT	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	490, 517
SfcI	CTRYAG	1 cut(s)	75
Sfr274I	CTCGAG	2 cut(s)	21, 174
SinI	GGWCC	3 cut(s)	30, 103, 301
SlaI	CTCGAG	2 cut(s)	21, 174
SmlI	CTYRAG	5 cut(s)	21, 51, 57, 174, 848
SmoI	CTYRAG	5 cut(s)	21, 51, 57, 174, 848
Sse9I	AATT	7 cut(s)	40, 219, 250, 370, 452, 574, 745
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	3 cut(s)	35, 476, 518
StyD4I	CCNGG	4 cut(s)	382, 401, 456, 611
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	124, 820
TaiI	ACGT	2 cut(s)	352, 840
TaqI	TCGA	4 cut(s)	22, 175, 651, 861
TasI	AATT	7 cut(s)	40, 219, 250, 370, 452, 574, 745
TatI	WGTACW	2 cut(s)	488, 878
Tru1I	TTAA	4 cut(s)	39, 83, 162, 892
Tru9I	TTAA	4 cut(s)	39, 83, 162, 892
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	2 cut(s)	77, 322
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	2 cut(s)	87, 660
VpaK11BI	GGWCC	3 cut(s)	30, 103, 301
XapI	RAATTY	1 cut(s)	452
XhoI	CTCGAG	2 cut(s)	21, 174
XspI	CTAG	3 cut(s)	35, 476, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.