Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

140444 .. 141482

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggctgacctttacttatcaagaaagttggttgggacttcacctgtgagtgactctggtgctccaaattggtctctcgcctctcctactataaccataggctctaaagtatccagagccagcagggcaagtgtaacaacagttcaggaggagaatgatgtggaggagcttgagatgttgctcgaggcctactttatgcaaattgaaggcacgttgaataaattgaccacgctgcgtgaatacattgatgacacagaggattacattaacatccagcttgacaatcatcggaatcagctaattcagctagagctgtttctgagttctggaactgtttgtgtgtctatatattctttggtggctgcaatatttggcatgaacattaagtacacatggaacgaaaatcatgagcacgtattcaaatgggtggtgattacaacaggattagttggcgcatcgattttcttgtttatagtttcgtatgctcggcacaaaggtcttgttggatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

170

Amino Acids

18.98

Weight (kDa)

5.0

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	206, 217, 421
AluBI	AGCT	5 cut(s)	169, 277, 298, 307, 313
AluI	AGCT	5 cut(s)	169, 277, 298, 307, 313
Alw21I	GWGCWC	2 cut(s)	64, 414
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	232, 362
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	33, 442
AvaI	CYCGRG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	506
Bbv12I	GWGCWC	2 cut(s)	64, 414
BbvI	GCAGC	2 cut(s)	219, 349
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	233, 363
BlsI	GCNGC	2 cut(s)	234, 364
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	508
BmsI	GCATC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	458
BsaAI	YACGTR	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	458
BseGI	GGATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	164, 179
BseXI	GCAGC	2 cut(s)	219, 349
BshFI	GGCC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	458
BsiHKAI	GWGCWC	2 cut(s)	64, 414
BsiHKCI	CYCGRG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	64, 414
Bsp143I	GATC	1 cut(s)	506
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	312
BspDI	ATCGAT	1 cut(s)	458
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	508
BspPI	GGATC	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	78
BssMI	GATC	1 cut(s)	506
Bst4CI	ACNGT	2 cut(s)	142, 334
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 304
BstV1I	GCAGC	2 cut(s)	219, 349
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
Bsu15I	ATCGAT	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	1 cut(s)	455
ClaI	ATCGAT	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	3 cut(s)	376, 393, 407
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	182
FaeI	CATG	3 cut(s)	379, 396, 410
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	375, 392, 406
Fnu4HI	GCNGC	2 cut(s)	233, 363
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	233, 363
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	233, 363
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	379, 396, 410
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	53, 292
HphI	GGTGA	2 cut(s)	33, 442
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	2 cut(s)	291, 321
Hpy188III	TCNNGA	6 cut(s)	21, 114, 146, 327, 407, 510
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	142, 334
HpyCH4IV	ACGT	2 cut(s)	212, 414
HpyCH4V	TGCA	2 cut(s)	199, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 304
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	212, 414
Hsp92II	CATG	3 cut(s)	379, 396, 410
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	67, 166
LpnPI	CCDG	9 cut(s)	42, 57, 109, 127, 131, 133, 287, 312, 426
Lsp1109I	GCAGC	2 cut(s)	219, 349
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	212, 414
MaeIII	GTNAC	2 cut(s)	50, 133
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	64, 414
MluCI	AATT	4 cut(s)	67, 201, 221, 300
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	91, 142, 157, 178, 250
MseI	TTAA	2 cut(s)	267, 384
MwoI	GCNNNNNNNGC	2 cut(s)	125, 304
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	3 cut(s)	379, 396, 410
NlaIV	GGNNCC	1 cut(s)	508
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	234, 364
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	508
PspXI	VCTCGAGB	1 cut(s)	182
PsrI	GAACNNNNNNTAC	4 cut(s)	126, 158, 371, 403
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	267, 384
SatI	GCNGC	2 cut(s)	233, 363
Sau3AI	GATC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	64, 414
SfaNI	GCATC	1 cut(s)	464
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	170, 182
SmoI	CTYRAG	2 cut(s)	170, 182
Sse9I	AATT	4 cut(s)	67, 201, 221, 300
SseBI	AGGCCT	1 cut(s)	188
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	142, 334
TaiI	ACGT	2 cut(s)	215, 417
TaqI	TCGA	2 cut(s)	183, 458
TasI	AATT	4 cut(s)	67, 201, 221, 300
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	267, 384
Tru9I	TTAA	2 cut(s)	267, 384
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	232, 362
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	182
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.