Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

3092350 .. 3093710

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTTTGCATCGGTCGATGATTCCAAAGACGATGATGGCGAGGAAGAGGATGAGGTGAGGGATGAGCTCGAGCAGCTGCTGGATGATGATGATGATATGGCCGACCTTTACTTGTCAAGAAAGTTGGCGGGTGCATGTTCACCAGTTAGTGCCTCTGGTCCTCCCAATTGGTATCCTGCCTCCCCTACCATAGGCTCAATATCACGGGCAAGTAGAGCAAGTATGGTAACTGTTCGTGGAGATGAGAATGACGTTGAGGAACTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGCACCTTGAACAAGTTAGCTACGGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

4.05

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AciI	CCGC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	266, 310
AluBI	AGCT	4 cut(s)	67, 76, 320, 330
AluI	AGCT	4 cut(s)	67, 76, 320, 330
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	73, 76
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	67, 132
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	63, 85
BccI	CCATC	2 cut(s)	29, 293
BciVI	GTATCC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	74, 77
BlsI	GCNGC	2 cut(s)	75, 78
Bme18I	GGWCC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	304
BmsI	GCATC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	143, 279
BseGI	GGATG	3 cut(s)	55, 67, 88
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	143, 279
BseXI	GCAGC	2 cut(s)	63, 85
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	143, 279
Bst4CI	ACNGT	2 cut(s)	232, 325
Bst6I	CTCTTC	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	55, 67, 88
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 215
BstNSI	RCATGY	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	63, 85
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	3 cut(s)	55, 67, 88
CaiI	CAGNNNCTG	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	7 cut(s)	67, 76, 101, 195, 281, 320, 330
CviKI_1	RGCY	7 cut(s)	67, 76, 101, 195, 281, 320, 330
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	138
FaiI	YATR	5 cut(s)	98, 136, 191, 224, 290
FatI	CATG	1 cut(s)	134
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	74, 77
FokI	GGATG	3 cut(s)	62, 74, 95
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	74, 77
FspBI	CTAG	1 cut(s)	331
GluI	GCNGC	2 cut(s)	74, 77
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	138
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	2 cut(s)	67, 132
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	232, 325
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	8, 134, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 215
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	65, 141, 156, 189, 260
Lsp1109I	GCAGC	2 cut(s)	63, 85
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	331
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	226, 270
MboII	GAAGA	1 cut(s)	56
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	166
MnlI	CCTC	9 cut(s)	34, 40, 46, 51, 163, 171, 190, 250, 271
MspA1I	CMGCKG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	73, 215
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	75, 78
Psp124BI	GAGCTC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	158
PspXI	VCTCGAGB	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	69
SatI	GCNGC	2 cut(s)	74, 77
Sau96I	GGNCC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	57, 69, 78, 108, 255, 308, 322, 332
SfaNI	GCATC	1 cut(s)	17
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	331
SstI	GAGCTC	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	232, 325
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	15, 69
TasI	AATT	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	73, 76
VpaK11BI	GGWCC	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	189
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.