Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Reverse (-)

25806698 .. 25809711

Gene Structure 3014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCGCAAAACGGGTACTTGGTTCCAGCGGATCCTTCGGCGGTTGTGACGGTGAAGAAGAAAACGCCACAAGCGTCGTGGGCTCTTATTGACGCGACGGGACAGAGTGAGCCACTCGATGTTGATAAGTATGAGATCATGCACCGTGTCCAGATCCACGCTCGCGATCTCCGGATTCTAGACCCCAATTTATCTTACCCTTCCACTATTCTTGGCCGAGAGAGAGCCATTGTTCTCAATTTGGAGCATATCAAGGCTATTATCACTTCCGAAGAGGTTTTGCTTCGGGATCCGTCTGATGAAAATGTTATTCCAGTTGTGGAGGAGCTTCGAAGACGCTTACCTGTTGGAAATGCATCACACAATGGTGGTCAAGGAGACGGGAAAGAGATCGCAGGTGCTCAAAACGACGGTGATACTGGTGACGAAGATGAATCCCCATTTGAATTTCGGGCGCTGGAAGTAGCTTTGGAAGCAATCTGTAGCTTCTTAGCTGCAAGGACAGCAGAATTAGAAACAGCTGCTTATCCTGCTTTGGATGAGCTTACCTCAAAGATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGGTAAGAGATGAACTCGAACAGTTGCTGGATGATGACGATGATATGGCAGATCTTTACCTTTCAAGGAAACTTTCAAGTGCTTCCTCACCGATTAGTAGTATTGGTGAACCAAATTGGTATACTACTTCCCCAACAATAGGCTCTAAGATTTCAAGAGCAAGTAGAGCGAGTTTAGCCACAGTTCATGGGGATGAGAATGATGTTGAAGAACTTGAAATGTTACTCGAGGCATACTTCATGCAGATCGACAGCACTTTGAACAGATTAACAACACTACGTGAGTATATTGATGACACAGAGGACTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTTATTCAGTTGGAGCTAGTGTTAAGTTCTGGAACAGTTTGCTTATCGATGTACTCTCTTGTCGCTGGAATTTTCGGGATGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATACGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATGTCGTACGCTAGGTACAAAGGACTTGTGGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

394

Amino Acids

43.72

Weight (kDa)

4.76

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	38 - 235	1.5e-27	Magnesium transporter MRS2-like
MRS2-like	PF22099	273 - 321	5.7e-08	Magnesium transporter MRS2-like
CorA	PF01544	280 - 382	2e-08	CorA-like Mg2+ transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	749
AccII	CGCG	2 cut(s)	95, 165
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	2 cut(s)	29, 41
AclWI	GGATC	5 cut(s)	26, 39, 148, 284, 297
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	446, 1038
AdeI	CACNNNGTG	2 cut(s)	908, 1124
AfaI	GTAC	4 cut(s)	17, 1022, 1154, 1163
AfiI	CCNNNNNNNGG	3 cut(s)	571, 606, 767
AflIII	ACRYGT	1 cut(s)	1086
AleI	CACNNNNGTG	1 cut(s)	366
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	5 cut(s)	26, 39, 148, 284, 297
AlwNI	CAGNNNCTG	1 cut(s)	655
Ama87I	CYCGRG	2 cut(s)	618, 854
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	494, 521
ApoI	RAATTY	2 cut(s)	446, 1038
AspLEI	GCGC	2 cut(s)	7, 457
AsuHPI	GGTGA	5 cut(s)	64, 425, 434, 708, 746
AsuII	TTCGAA	1 cut(s)	331
AvaI	CYCGRG	2 cut(s)	618, 854
BamHI	GGATCC	2 cut(s)	31, 289
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	481, 508
BceAI	ACGGC	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	1076
BclI	TGATCA	1 cut(s)	1140
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	179, 986, 1158
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	2 cut(s)	495, 522
BlsI	GCNGC	2 cut(s)	496, 523
BmeT110I	CYCGRG	2 cut(s)	618, 854
BmiI	GGNNCC	3 cut(s)	24, 33, 291
BmsI	GCATC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	340
BplI	GAGNNNNNCTC	4 cut(s)	533, 565, 627, 659
Bpu14I	TTCGAA	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	1016
BsaAI	YACGTR	2 cut(s)	908, 1099
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	3 cut(s)	571, 606, 767
Bse1I	ACTGG	2 cut(s)	314, 424
BseAI	TCCGGA	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	1016
BseGI	GGATG	5 cut(s)	544, 664, 826, 942, 1053
BseLI	CCNNNNNNNGG	3 cut(s)	571, 606, 767
BseNI	ACTGG	2 cut(s)	314, 424
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	481, 508
Bsh1236I	CGCG	2 cut(s)	95, 165
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	1016
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	2 cut(s)	618, 854
BsiSI	CCGG	1 cut(s)	172
BsiWI	CGTACG	1 cut(s)	1152
BslFI	GGGAC	2 cut(s)	114, 1129
BslI	CCNNNNNNNGG	3 cut(s)	571, 606, 767
BsmAI	GTCTC	1 cut(s)	372
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	2 cut(s)	114, 1129
BsnI	GGCC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	618, 854
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	85, 403
Bsp13I	TCCGGA	1 cut(s)	171
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	2 cut(s)	29, 41
BspANI	GGCC	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	1016
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	2 cut(s)	95, 165
BspLI	GGNNCC	3 cut(s)	24, 33, 291
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	5 cut(s)	26, 39, 148, 284, 297
BspT104I	TTCGAA	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	314, 424
BssNAI	GTATAC	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	750
Bst4CI	ACNGT	7 cut(s)	52, 146, 413, 651, 811, 1006, 1076
Bst6I	CTCTTC	2 cut(s)	267, 587
BstBAI	YACGTR	2 cut(s)	908, 1099
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	490, 774
BstF5I	GGATG	5 cut(s)	544, 664, 826, 942, 1053
BstFNI	CGCG	2 cut(s)	95, 165
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	2 cut(s)	7, 457
BstMAI	GTCTC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 473, 503, 530, 794, 803
BstNSI	RCATGY	1 cut(s)	1090
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	2 cut(s)	95, 165
BstV1I	GCAGC	2 cut(s)	481, 508
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	5 cut(s)	31, 153, 289, 679, 1178
BstXI	CCANNNNNNTGG	1 cut(s)	1065
BstYI	RGATCY	5 cut(s)	31, 153, 289, 679, 1178
BstZ17I	GTATAC	1 cut(s)	750
Bsu15I	ATCGAT	1 cut(s)	1016
BsuI	GTATCC	1 cut(s)	1076
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	1016
BtsCI	GGATG	5 cut(s)	544, 664, 826, 942, 1053
BtuMI	TCGCGA	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	655
CfoI	GCGC	2 cut(s)	7, 457
ClaI	ATCGAT	1 cut(s)	1016
CseI	GACGC	3 cut(s)	63, 101, 345
Csp6I	GTAC	4 cut(s)	16, 1021, 1153, 1162
CspCI	CAANNNNNGTGG	4 cut(s)	59, 94, 193, 228
CviAII	CATG	7 cut(s)	139, 601, 815, 868, 1065, 1079, 1087
CviQI	GTAC	4 cut(s)	16, 1021, 1153, 1162
DdeI	CTNAG	2 cut(s)	490, 774
DraIII	CACNNNGTG	2 cut(s)	908, 1124
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	267, 587
EarI	CTCTTC	2 cut(s)	267, 587
Eco24I	GRGCYC	1 cut(s)	85
Eco88I	CYCGRG	2 cut(s)	618, 854
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	7 cut(s)	142, 604, 818, 871, 1068, 1082, 1090
FaqI	GGGAC	2 cut(s)	114, 1129
FatI	CATG	7 cut(s)	138, 600, 814, 867, 1064, 1078, 1086
FbaI	TGATCA	1 cut(s)	1140
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	2 cut(s)	495, 522
FokI	GGATG	5 cut(s)	551, 671, 833, 929, 1060
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	495, 522
FspBI	CTAG	3 cut(s)	179, 986, 1158
GlaI	GCGC	2 cut(s)	6, 456
GluI	GCNGC	2 cut(s)	495, 522
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	3 cut(s)	63, 101, 345
HhaI	GCGC	2 cut(s)	7, 457
Hin1II	CATG	7 cut(s)	142, 604, 818, 871, 1068, 1082, 1090
Hin6I	GCGC	2 cut(s)	5, 455
HinP1I	GCGC	2 cut(s)	5, 455
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	4 cut(s)	175, 434, 604, 964
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	5 cut(s)	64, 425, 434, 708, 746
Hpy166II	GTNNAC	3 cut(s)	612, 737, 750
Hpy188I	TCNGA	4 cut(s)	271, 298, 585, 963
Hpy188III	TCNNGA	9 cut(s)	151, 164, 172, 179, 287, 783, 999, 1045, 1182
Hpy8I	GTNNAC	3 cut(s)	612, 737, 750
Hpy99I	CGWCG	4 cut(s)	79, 100, 413, 1076
HpyAV	CCTTC	2 cut(s)	45, 210
HpyCH4III	ACNGT	7 cut(s)	52, 146, 413, 651, 811, 1006, 1076
HpyCH4IV	ACGT	2 cut(s)	907, 1098
HpyCH4V	TGCA	4 cut(s)	142, 356, 497, 871
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 473, 503, 530, 794, 803
HpyF3I	CTNAG	2 cut(s)	490, 774
HpySE526I	ACGT	2 cut(s)	907, 1098
Hsp92II	CATG	7 cut(s)	142, 604, 818, 871, 1068, 1082, 1090
HspAI	GCGC	2 cut(s)	5, 455
Kpn2I	TCCGGA	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	1140
LmnI	GCTCC	3 cut(s)	244, 325, 982
Lsp1109I	GCAGC	2 cut(s)	481, 508
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	3 cut(s)	179, 986, 1158
MaeII	ACGT	2 cut(s)	907, 1098
MaeIII	GTNAC	3 cut(s)	46, 422, 849
MboII	GAAGA	7 cut(s)	67, 70, 284, 345, 440, 604, 848
MflI	RGATCY	5 cut(s)	31, 153, 289, 679, 1178
MhlI	GDGCHC	2 cut(s)	85, 403
MluCI	AATT	8 cut(s)	187, 238, 446, 509, 568, 587, 742, 1038
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	2 cut(s)	328, 960
MnlI	CCTC	6 cut(s)	268, 316, 559, 724, 850, 922
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	3 cut(s)	896, 939, 992
MslI	CAYNNNNRTG	3 cut(s)	366, 819, 1063
MspA1I	CMGCKG	2 cut(s)	29, 521
MspI	CCGG	1 cut(s)	172
MvnI	CGCG	2 cut(s)	95, 165
MwoI	GCNNNNNNNGC	6 cut(s)	80, 473, 503, 530, 794, 803
NlaIII	CATG	7 cut(s)	142, 604, 818, 871, 1068, 1082, 1090
NlaIV	GGNNCC	3 cut(s)	24, 33, 291
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	46, 422
NruI	TCGCGA	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	1090
NspV	TTCGAA	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	854
PaqCI	CACCTGC	1 cut(s)	386
PciI	ACATGT	1 cut(s)	1086
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	175, 434, 964
Pfl23II	CGTACG	1 cut(s)	1152
PkrI	GCNGC	2 cut(s)	496, 523
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	2 cut(s)	908, 1099
PscI	ACATGT	1 cut(s)	1086
PspLI	CGTACG	1 cut(s)	1152
PspN4I	GGNNCC	3 cut(s)	24, 33, 291
PspXI	VCTCGAGB	1 cut(s)	854
PsrI	GAACNNNNNNTAC	2 cut(s)	1043, 1075
PstNI	CAGNNNCTG	1 cut(s)	655
PsuI	RGATCY	5 cut(s)	31, 153, 289, 679, 1178
PvuII	CAGCTG	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	165
RsaI	GTAC	4 cut(s)	17, 1022, 1154, 1163
RsaNI	GTAC	4 cut(s)	16, 1021, 1153, 1162
RseI	CAYNNNNRTG	3 cut(s)	366, 819, 1063
SaqAI	TTAA	3 cut(s)	896, 939, 992
SatI	GCNGC	2 cut(s)	495, 522
SchI	GAGTC	1 cut(s)	598
SduI	GDGCHC	2 cut(s)	85, 403
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	481
Sfr274I	CTCGAG	1 cut(s)	854
SfuI	TTCGAA	1 cut(s)	331
SlaI	CTCGAG	1 cut(s)	854
SmiMI	CAYNNNNRTG	3 cut(s)	366, 819, 1063
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	8 cut(s)	187, 238, 446, 509, 568, 587, 742, 1038
SsiI	CCGC	2 cut(s)	29, 41
SspMI	CTAG	3 cut(s)	179, 986, 1158
TaaI	ACNGT	7 cut(s)	52, 146, 413, 651, 811, 1006, 1076
TaiI	ACGT	2 cut(s)	910, 1101
TaqI	TCGA	6 cut(s)	117, 331, 645, 855, 876, 1016
TasI	AATT	8 cut(s)	187, 238, 446, 509, 568, 587, 742, 1038
TatI	WGTACW	1 cut(s)	1020
TfiI	GAWTC	3 cut(s)	175, 434, 964
Tru1I	TTAA	3 cut(s)	896, 939, 992
Tru9I	TTAA	3 cut(s)	896, 939, 992
TseFI	GTSAC	2 cut(s)	46, 422
TseI	GCWGC	2 cut(s)	494, 521
Tsp45I	GTSAC	2 cut(s)	46, 422
TspDTI	ATGAA	6 cut(s)	315, 447, 654, 803, 856, 1064
TspGWI	ACGGA	1 cut(s)	282
XapI	RAATTY	2 cut(s)	446, 1038
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	1090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	3 cut(s)	179, 986, 1158
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.