Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000719

Physical Location & Seq

Genomic Coordinates Forward (+)

35635698 .. 35638728

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTGCATATTCCTCTTAAACGGCTTCCAGCTGCCGGCGGACAGAGCCCTGGCCGTTTACATCCAGTCTCCCGGCTCCGCCTTCCTCTTCTGCGGCGCCGTCACCGTCGCTCGCCCCTCGGCGGTGCTCTCCCTCCCCTGGCCGGAGCCCGGTGGCCAGCTCCAGCTCACCGCCGACGCCGCCCCACTCTCCGCCAAGATCGGGGTCTCGGTCGAGGACCTGGCCACGCTGCCGTCTCTGGATGTCACCGCCGAGAAGCGAATTGAGCGTTTGGCGATGAAGGTTGGGGAGAATCTGTTCAATTTTATGCAGTCGTTTTGTGGCGTCGATGGCTCCAAGCTGGTGGTGCCCATGGATATATTGGATCGGTGGTTCAAGAAGTTCCAGGAGAGGGCTAAGCGAGACCCCGAGTACTTGAAGGGCTTCGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

144

Amino Acids

15.78

Weight (kDa)

6.25

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hikeshi-like_N	PF05603	2 - 76	1.4e-06	Hikeshi-like, N-terminal domain
Hikeshi-like_C	PF21057	88 - 140	1.2e-12	Hikeshi-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09690 AT5G09720 AT5G09720 AT5G64560 AT5G64560
fragaria_vesca	FvH4_2g22370 FvH4_2g22370 FvH4_2g22410 FvH4_4g02330 FvH4_4g02330
malus_domestica	MD05G1204800.v1.1 MD10G1191900.v1.1 MD13G1205200.v1.1 MD16G1207000.v1.1
prunus_persica	Prupe.1G027800_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1 Prupe.8G231400_v2.0.a1
pyrus_communis	pycom05g19100 pycom10g16560 pycom10g16580 pycom13g17790 pycom16g17380
rosa_chinensis	RchiOBHm_Chr2g0150571 RchiOBHm_Chr4g0389661 RchiOBHm_Chr4g0389711 RchiOBHm_Chr6g0289361
rosa_laevigata	RLG00000009961 RLG00000012309
rosa_multiflora	Rmu_sc0001527.1_g000030 Rmu_sc0005115.1_g000007 Rmu_sc0005697.1_g000020 Rmu_sc0007419.1_g000012
rosa_roxburghii	Rroxscaffold_5G00335660 Rroxscaffold_5G00335700 Rroxscaffold_7G00179320
rosa_rugosa	Rorug03G0310000 Rorug03G0324700 Rorug04G0112800 Rorug04G0112900 Rorug04G0113000
rosa_samantha	Rh4AG029400 Rh4AG029700 Rh4BG022600 Rh4BG022800 Rh4CG031300 Rh4DG023000 Rh5DG350100 Rh6BG321400 Rh6CG327700 Rh6DG313300
rosa_wichuraiana	Rw3G027490 Rw4G002190 Rw4G002220 Rw4G006140 Rw6G003570 Rw6G005340 Rw6G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 346
AciI	CCGC	8 cut(s)	38, 78, 93, 122, 171, 180, 192, 249
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	4 cut(s)	51, 140, 154, 222
AcyI	GRCGYC	3 cut(s)	96, 177, 324
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	7 cut(s)	34, 121, 138, 142, 149, 201, 391
AgsI	TTSAA	3 cut(s)	301, 376, 418
AjnI	CCWGG	4 cut(s)	48, 137, 219, 384
AloI	GAACNNNNNNTCC	4 cut(s)	281, 313, 356, 388
AluBI	AGCT	4 cut(s)	31, 160, 166, 340
AluI	AGCT	4 cut(s)	31, 160, 166, 340
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	4 cut(s)	72, 211, 240, 396
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	4 cut(s)	51, 140, 154, 222
ApeKI	GCWGC	2 cut(s)	31, 229
Asp700I	GAANNNNTTC	2 cut(s)	296, 422
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	2 cut(s)	72, 150
AsuHPI	GGTGA	3 cut(s)	94, 160, 238
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	351
BalI	TGGCCA	2 cut(s)	156, 224
BanI	GGYRCC	2 cut(s)	95, 346
BanII	GRGCYC	2 cut(s)	49, 150
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	18, 216
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	4 cut(s)	37, 38, 83, 217
BciT130I	CCWGG	4 cut(s)	50, 139, 221, 386
BcnI	CCSGG	2 cut(s)	72, 150
BcoDI	GTCTC	4 cut(s)	72, 211, 240, 396
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	4 cut(s)	32, 94, 180, 230
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	4 cut(s)	33, 95, 181, 231
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	6 cut(s)	50, 72, 139, 150, 221, 386
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	5 cut(s)	76, 97, 147, 334, 348
BmrFI	CCNGG	6 cut(s)	50, 72, 139, 150, 221, 386
BpmI	CTGGAG	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuMI	CCSGG	2 cut(s)	72, 150
BsaHI	GRCGYC	3 cut(s)	96, 177, 324
BsaI	GGTCTC	2 cut(s)	211, 396
BsaJI	CCNNGG	4 cut(s)	48, 117, 137, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 121, 138, 142, 149, 201, 391
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	4 cut(s)	50, 139, 221, 386
BseDI	CCNNGG	4 cut(s)	48, 117, 137, 351
BseGI	GGATG	2 cut(s)	60, 247
BseLI	CCNNNNNNNGG	7 cut(s)	34, 121, 138, 142, 149, 201, 391
BseNI	ACTGG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	18, 216
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	53, 142, 156, 224
BshNI	GGYRCC	2 cut(s)	95, 346
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	35, 72, 143, 150
BslI	CCNNNNNNNGG	7 cut(s)	34, 121, 138, 142, 149, 201, 391
BsmAI	GTCTC	4 cut(s)	72, 211, 240, 396
BsmBI	CGTCTC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	53, 142, 156, 224
Bso31I	GGTCTC	2 cut(s)	211, 396
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	4 cut(s)	49, 129, 150, 351
Bsp143I	GATC	2 cut(s)	198, 364
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	8 cut(s)	38, 78, 93, 122, 171, 180, 192, 249
BspANI	GGCC	4 cut(s)	53, 142, 156, 224
BspLI	GGNNCC	5 cut(s)	76, 97, 147, 334, 348
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	2 cut(s)	95, 346
BspTNI	GGTCTC	2 cut(s)	211, 396
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	48, 117, 137, 351
BssMI	GATC	2 cut(s)	198, 364
BssNI	GRCGYC	3 cut(s)	96, 177, 324
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	4 cut(s)	50, 139, 221, 386
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	3 cut(s)	96, 177, 324
BstC8I	GCNNGC	3 cut(s)	36, 112, 158
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	60, 247
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	201, 367
BstMAI	GTCTC	4 cut(s)	72, 211, 240, 396
BstMBI	GATC	2 cut(s)	198, 364
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 179, 265, 330, 346
BstNI	CCWGG	4 cut(s)	50, 139, 221, 386
BstSCI	CCNGG	6 cut(s)	48, 70, 137, 148, 219, 384
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	18, 216
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	4 cut(s)	53, 142, 156, 224
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	60, 247
Cac8I	GCNNGC	3 cut(s)	36, 112, 158
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	2 cut(s)	185, 313
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	352
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	396
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	2 cut(s)	200, 366
DpnII	GATC	2 cut(s)	198, 364
EaeI	YGGCCR	4 cut(s)	51, 140, 154, 222
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	3 cut(s)	53, 67, 181
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	49, 150
Eco31I	GGTCTC	2 cut(s)	211, 396
Eco47I	GGWCC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	4 cut(s)	48, 137, 219, 384
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	49, 150
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	1 cut(s)	355
FaiI	YATR	4 cut(s)	8, 308, 353, 359
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	32, 94, 180, 230
FokI	GGATG	2 cut(s)	47, 254
FriOI	GRGCYC	2 cut(s)	49, 150
Fsp4HI	GCNGC	4 cut(s)	32, 94, 180, 230
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	4 cut(s)	32, 94, 180, 230
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	53, 142, 156, 224
HapII	CCGG	4 cut(s)	35, 72, 143, 150
HgaI	GACGC	2 cut(s)	185, 313
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	3 cut(s)	96, 177, 324
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	4 cut(s)	35, 72, 143, 150
HphI	GGTGA	3 cut(s)	94, 160, 238
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	239, 376
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	3 cut(s)	110, 179, 329
HpyAV	CCTTC	3 cut(s)	91, 274, 412
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	6, 310
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 179, 265, 330, 346
HpyF3I	CTNAG	1 cut(s)	396
Hsp92I	GRCGYC	3 cut(s)	96, 177, 324
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	96
KasI	GGCGCC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	198, 364
LmnI	GCTCC	4 cut(s)	80, 145, 165, 338
Lsp1109I	GCAGC	2 cut(s)	18, 216
MaeIII	GTNAC	2 cut(s)	100, 244
MalI	GATC	2 cut(s)	200, 366
MboI	GATC	2 cut(s)	198, 364
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	4 cut(s)	49, 129, 150, 351
MlsI	TGGCCA	2 cut(s)	156, 224
MluCI	AATT	2 cut(s)	261, 301
MluNI	TGGCCA	2 cut(s)	156, 224
Mly113I	GGCGCC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	23, 95, 127, 143, 208, 384
Mox20I	TGGCCA	2 cut(s)	156, 224
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	2 cut(s)	296, 422
MscI	TGGCCA	2 cut(s)	156, 224
MseI	TTAA	1 cut(s)	17
Msp20I	TGGCCA	2 cut(s)	156, 224
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	4 cut(s)	35, 72, 143, 150
MspR9I	CCNGG	6 cut(s)	50, 72, 139, 150, 221, 386
MvaI	CCWGG	4 cut(s)	50, 139, 221, 386
MwoI	GCNNNNNNNGC	5 cut(s)	44, 179, 265, 330, 346
NaeI	GCCGGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	96
NciI	CCSGG	2 cut(s)	72, 150
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	198, 364
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	5 cut(s)	76, 97, 147, 334, 348
NmeAIII	GCCGAG	2 cut(s)	98, 277
NmuCI	GTSAC	2 cut(s)	100, 244
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	296, 422
PfeI	GAWTC	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	4 cut(s)	33, 95, 181, 231
PluTI	GGCGCC	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	4 cut(s)	48, 137, 219, 384
PspGI	CCWGG	4 cut(s)	48, 137, 219, 384
PspN4I	GGNNCC	5 cut(s)	76, 97, 147, 334, 348
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	4 cut(s)	32, 94, 180, 230
Sau3AI	GATC	2 cut(s)	198, 364
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	413
ScrFI	CCNGG	6 cut(s)	50, 72, 139, 150, 221, 386
SduI	GDGCHC	4 cut(s)	49, 129, 150, 351
SetI	ASST	6 cut(s)	33, 162, 168, 222, 285, 342
SfoI	GGCGCC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	2 cut(s)	261, 301
SsiI	CCGC	8 cut(s)	38, 78, 93, 122, 171, 180, 192, 249
SspDI	GGCGCC	1 cut(s)	95
StyD4I	CCNGG	6 cut(s)	48, 70, 137, 148, 219, 384
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	213, 327
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	2 cut(s)	261, 301
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	2 cut(s)	96, 182
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	2 cut(s)	100, 244
TseI	GCWGC	2 cut(s)	31, 229
Tsp45I	GTSAC	2 cut(s)	100, 244
TspDTI	ATGAA	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	296, 422
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.