Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

4347275 .. 4348029

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08221.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGGTATTCGTTCAGGCAAAATCCTGCTATAAGCAAATGCTCGCTTAAGATATTTTATGGGGGACACTGGAAAGATAAAATGGTTGAGGAGATACCAGTTAGTCGAGACTTGGACATATATTTTGATGGAGTTAGAAAAAAAGAAGAACCGGAAGAGTATCCTACAATTTTGTTATGGAATTGCCGAGGTCTTGGGGACCCGACCATAGATATGTTAAAAGTTATCATCAATATTTATGGTCCTTCAATTATCTTTCTCATTGAGACGCGTTTGTCGTCTAAGGTTATAAAAATAGTATCTTCCAAATTAGGGTTTCAAAATGTTTGGGATTCCGCTGTAACCAAAGCGGCAGCCGGTGAAGATAACTGTGTAGGCTTGGCCATGTTGATGAAACCAAATATGAATGTCACATTTTTAGATAAGACAAGCAATTATCTTGATTTCGTGATTACCGTAGATTCTACCGGTGAAAAGTGGAGGTTGACAGGATTCTATGGGCATCCAAAGTTGAAGAATCCCTCTTGGGAGTGGCTCAAAAGTTATCAGAAGTTGAGAAGAAACTCCCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

192

Amino Acids

21.89

Weight (kDa)

9.02

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	274
AccII	CGCG	1 cut(s)	271
AciI	CCGC	2 cut(s)	336, 350
AcoI	YGGCCR	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflII	CTTAAG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	249, 320, 514
Alw26I	GTCTC	2 cut(s)	102, 260
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AsiGI	ACCGGT	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	199, 242
AsuHPI	GGTGA	2 cut(s)	371, 482
AvaII	GGWCC	2 cut(s)	199, 242
BalI	TGGCCA	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	102, 260
BfrI	CTTAAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	351, 354
BlsI	GCNGC	2 cut(s)	352, 355
Bme18I	GGWCC	2 cut(s)	199, 242
BmgT120I	GGNCC	2 cut(s)	199, 242
BmiI	GGNNCC	2 cut(s)	200, 201
BmsI	GCATC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	187, 568
BsaWI	WCCGGW	2 cut(s)	151, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	2 cut(s)	356, 467
Bse1I	ACTGG	2 cut(s)	74, 98
BseDI	CCNNGG	2 cut(s)	187, 568
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	74, 98
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	383
BshTI	ACCGGT	1 cut(s)	467
BsiSI	CCGG	3 cut(s)	152, 357, 468
BslFI	GGGAC	2 cut(s)	78, 212
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	102, 260
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	78, 212
BsnI	GGCC	1 cut(s)	383
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	2 cut(s)	336, 350
BspANI	GGCC	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	200, 201
BspTI	CTTAAG	1 cut(s)	47
BsrFI	RCCGGY	2 cut(s)	356, 467
BsrI	ACTGG	2 cut(s)	74, 98
BssAI	RCCGGY	2 cut(s)	356, 467
BssECI	CCNNGG	2 cut(s)	187, 568
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	2 cut(s)	371, 457
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	102, 260
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	44
Cfr10I	RCCGGY	2 cut(s)	356, 467
Cfr13I	GGNCC	2 cut(s)	199, 242
CseI	GACGC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	2 cut(s)	385, 569
CviJI	RGCY	4 cut(s)	356, 378, 383, 535
CviKI_1	RGCY	4 cut(s)	356, 378, 383, 535
DdeI	CTNAG	1 cut(s)	282
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	199, 242
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	2 cut(s)	388, 572
FaqI	GGGAC	2 cut(s)	78, 212
FatI	CATG	2 cut(s)	384, 568
Fnu4HI	GCNGC	2 cut(s)	351, 354
FokI	GGATG	1 cut(s)	489
Fsp4HI	GCNGC	2 cut(s)	351, 354
GluI	GCNGC	2 cut(s)	351, 354
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	3 cut(s)	152, 357, 468
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	388, 572
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	332, 461, 492, 517
HpaII	CCGG	3 cut(s)	152, 357, 468
HphI	GGTGA	2 cut(s)	371, 482
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	3 cut(s)	107, 440, 448
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	371, 457
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	388, 572
KflI	GGGWCCC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	39, 55, 111, 165, 370, 474, 481
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	511
MaeIII	GTNAC	2 cut(s)	340, 409
MboII	GAAGA	6 cut(s)	158, 167, 294, 374, 526, 570
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	5 cut(s)	168, 181, 249, 308, 433
MluI	ACGCGT	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	383
MnlI	CCTC	4 cut(s)	82, 182, 474, 532
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	3 cut(s)	48, 218, 574
MslI	CAYNNNNRTG	2 cut(s)	212, 389
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	3 cut(s)	152, 357, 468
MvnI	CGCG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	568
NlaIII	CATG	2 cut(s)	388, 572
NlaIV	GGNNCC	2 cut(s)	200, 201
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 453
PfeI	GAWTC	4 cut(s)	332, 461, 492, 517
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	352, 355
PpuMI	RGGWCCY	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	200, 201
PspPI	GGNCC	2 cut(s)	199, 242
PspPPI	RGGWCCY	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	212, 389
SaqAI	TTAA	3 cut(s)	48, 218, 574
SatI	GCNGC	2 cut(s)	351, 354
Sau96I	GGNCC	2 cut(s)	199, 242
SetI	ASST	3 cut(s)	193, 288, 485
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	2 cut(s)	199, 242
SmiMI	CAYNNNNRTG	2 cut(s)	212, 389
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	5 cut(s)	168, 181, 249, 308, 433
SsiI	CCGC	2 cut(s)	336, 350
SspI	AATATT	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	371, 457
TaqI	TCGA	1 cut(s)	106
TasI	AATT	5 cut(s)	168, 181, 249, 308, 433
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	4 cut(s)	332, 461, 492, 517
Tru1I	TTAA	3 cut(s)	48, 218, 574
Tru9I	TTAA	3 cut(s)	48, 218, 574
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	407, 419
TspRI	CASTG	1 cut(s)	74
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	199, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.