Rroxscaffold_3G00273700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001839
Physical Location & Seq
Forward (+)
65413959 .. 65416956
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273700.1

Sequence Viewer

Length: 1137 bp
ATGGCGCCGAGAAACTTGCTCTGGTCCTGGGAAACGGAGCCCGATGCCGTGTTTGAGAATCTCCAATGGACACGGATGAAGGTCCAACTTAAGGATTCTGATCGCGCAGAGGCCATCGCTGCCATCCAAGATGTCCTCAAAAAATTCCAGGAAGATGATAAGCCACATGTACTCTTCTCAATCGCCTACGCCGTCCAAAAGGAACTCTTTAAATCTAAGGAGATAGACGTGGAGATAATAAAAAAAGTTGCAGCGTTGTACCCACTCACCGGGGAGGATGACGACGACCACCACCACGTTGACAACCGGCTGACGGCGGCGGCGGGTGATTTTAAACTGTCAGCGGATGCGGAGGAGGAGGAGGGGGAGGATGAGGCTGATGATGCTGATGCTGATGCTGCGGATGAGGAATGGGAGGAGTATGTAAGTGAGGATGAGGATGAGGCGGTGGCGGATGGCGGGGATGATGATGATCTTAAAAAGAGAGAAGCAGCCATGAAGGAGTTTGAAGAAGCAGGCATCAAGGAATTGAAGCGACGGTGCAATATTATGGGATGCAGTCTGAAACAAGGCCAAGAGCAGGAAATCCTCAGTGTGATGATTTCATTATTTAGCACACAAAGATTCAGAGTTGATCACGAATATCAGATGAAAAGGTGCATTGAATTTTTCATGTCACGTGTCAAAGGTTATATTTCTAGGTCTTGCACCCTCGACGACTTGGAGACGGTACGCAAAGCCGTTGAAAGTGCGAAGAAGGAGAGGGAGGCTTATGCTGATCAACTTCATCAACTGGTAATGCAGAAATCCTTTTCGGATTACAACAATGAAACCCTTGTTGAATGTGAATTGAAGATCTCCACTGCGATTGATCTTCAATTGGAAAAGAATACTGTACCAACTAATGAAGAAGGGATTGCTACCCCCGTGAACCAGCTAAAACAAGAGAAAAGAGAACGTGGTATTGAATGCGAGATTGCGACTTCCTTCAACCTGCCAGAACAAGAAGAAATCACCCTCACACCGCCGGAATTTGAAGATACGAAAATTGAAGAATGCGGGATTGTGACTCCTATGAACCGGCCAGAACAAGAAGAAGAAAATATGGTTGATGTTAATTTCTGCCTCGCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.32

Weight (kDa)

4.41

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1002
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 1082
AcsI RAATTY 3 cut(s) 143, 665, 1031
AcvI CACGTG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 171, 260, 732, 897
AfiI CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 166, 679
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 26, 147
AluBI AGCT 1 cut(s) 937
AluI AGCT 1 cut(s) 937
Alw26I GTCTC 1 cut(s) 719
AoxI GGCC 3 cut(s) 111, 571, 1082
ApeKI GCWGC 4 cut(s) 119, 251, 398, 491
ApoI RAATTY 3 cut(s) 143, 665, 1031
AspLEI GCGC 2 cut(s) 7, 107
AspS9I GGNCC 2 cut(s) 24, 82
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 259, 338, 1006
AvaII GGWCC 2 cut(s) 24, 82
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 42
BbrPI CACGTG 1 cut(s) 680
BbvI GCAGC 4 cut(s) 106, 263, 385, 503
BccI CCATC 3 cut(s) 122, 131, 449
BceAI ACGGC 4 cut(s) 32, 176, 330, 725
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 28, 149
BclI TGATCA 2 cut(s) 634, 778
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 1 cut(s) 699
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 1002
BglII AGATCT 1 cut(s) 855
BisI GCNGC 6 cut(s) 120, 252, 318, 321, 399, 492
BlsI GCNGC 6 cut(s) 121, 253, 319, 322, 400, 493
Bme1390I CCNGG 3 cut(s) 28, 149, 271
Bme18I GGWCC 2 cut(s) 24, 82
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 24, 82
BmiI GGNNCC 2 cut(s) 6, 39
BmrFI CCNGG 3 cut(s) 28, 149, 271
BmsI GCATC 7 cut(s) 34, 337, 373, 379, 385, 528, 545
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 680
BsaBI GATNNNNATC 2 cut(s) 99, 471
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 27, 270
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
Bse118I RCCGGY 2 cut(s) 306, 1080
Bse1I ACTGG 1 cut(s) 798
Bse8I GATNNNNATC 2 cut(s) 99, 471
BseBI CCWGG 2 cut(s) 28, 149
BseDI CCNNGG 2 cut(s) 27, 270
BseJI GATNNNNATC 2 cut(s) 99, 471
BseLI CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
BseMII CTCAG 1 cut(s) 604
BseNI ACTGG 1 cut(s) 798
BseRI GAGGAG 4 cut(s) 368, 371, 374, 431
BseXI GCAGC 4 cut(s) 106, 263, 385, 503
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 113, 573, 1084
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 4 cut(s) 270, 307, 1028, 1081
BslI CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
BsmAI GTCTC 1 cut(s) 719
BsmBI CGTCTC 1 cut(s) 719
BsmI GAATGC 2 cut(s) 974, 1061
BsnI GGCC 3 cut(s) 113, 573, 1084
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 6 cut(s) 100, 472, 634, 778, 855, 871
BspANI GGCC 3 cut(s) 113, 573, 1084
BspCNI CTCAG 1 cut(s) 603
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 6, 39
BspMI ACCTGC 1 cut(s) 1002
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 89
BsrFI RCCGGY 2 cut(s) 306, 1080
BsrI ACTGG 1 cut(s) 798
BssAI RCCGGY 2 cut(s) 306, 1080
BssECI CCNNGG 2 cut(s) 27, 270
BssMI GATC 6 cut(s) 100, 472, 634, 778, 855, 871
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 28, 149
Bst4CI ACNGT 4 cut(s) 339, 540, 730, 895
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 216, 590
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 107
BstKTI GATC 6 cut(s) 103, 475, 637, 781, 858, 874
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 6 cut(s) 100, 472, 634, 778, 855, 871
BstMWI GCNNNNNNNGC 3 cut(s) 119, 383, 398
BstNI CCWGG 2 cut(s) 28, 149
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 26, 147, 269
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 106, 263, 385, 503
BstX2I RGATCY 1 cut(s) 855
BstYI RGATCY 1 cut(s) 855
BsuRI GGCC 3 cut(s) 113, 573, 1084
BtgZI GCGATG 1 cut(s) 100
BtrI CACGTC 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 598, 861
BveI ACCTGC 1 cut(s) 1002
Cac8I GCNNGC 1 cut(s) 517
CfoI GCGC 2 cut(s) 7, 107
Cfr10I RCCGGY 2 cut(s) 306, 1080
Cfr13I GGNCC 2 cut(s) 24, 82
Csp6I GTAC 4 cut(s) 170, 259, 731, 896
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviAII CATG 3 cut(s) 167, 496, 673
CviQI GTAC 4 cut(s) 170, 259, 731, 896
DdeI CTNAG 2 cut(s) 216, 590
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 102, 474, 636, 780, 857, 873
DpnII GATC 6 cut(s) 100, 472, 634, 778, 855, 871
DraI TTTAAA 2 cut(s) 211, 334
EaeI YGGCCR 1 cut(s) 1082
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 24, 82
Eco72I CACGTG 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 26, 147
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 3 cut(s) 170, 499, 676
FaiI YATR 9 cut(s) 168, 423, 497, 551, 674, 693, 774, 1076, 1106
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 166, 495, 672
FauI CCCGC 3 cut(s) 316, 452, 1052
FbaI TGATCA 2 cut(s) 634, 778
Fnu4HI GCNGC 6 cut(s) 120, 252, 318, 321, 399, 492
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 6 cut(s) 120, 252, 318, 321, 399, 492
FspBI CTAG 1 cut(s) 699
GlaI GCGC 2 cut(s) 6, 106
GluI GCNGC 6 cut(s) 120, 252, 318, 321, 399, 492
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 113, 573, 1084
HapII CCGG 4 cut(s) 270, 307, 1028, 1081
HhaI GCGC 2 cut(s) 7, 107
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 170, 499, 676
Hin6I GCGC 2 cut(s) 5, 105
HinP1I GCGC 2 cut(s) 5, 105
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 4 cut(s) 58, 95, 624, 1069
HpaII CCGG 4 cut(s) 270, 307, 1028, 1081
HphI GGTGA 3 cut(s) 259, 338, 1006
Hpy166II GTNNAC 2 cut(s) 301, 931
Hpy188I TCNGA 5 cut(s) 100, 564, 629, 648, 817
Hpy188III TCNNGA 1 cut(s) 638
Hpy8I GTNNAC 2 cut(s) 301, 931
Hpy99I CGWCG 3 cut(s) 287, 540, 719
HpyAV CCTTC 5 cut(s) 73, 493, 751, 905, 997
HpyCH4III ACNGT 4 cut(s) 339, 540, 730, 895
HpyCH4IV ACGT 5 cut(s) 228, 297, 679, 958, 1133
HpyCH4V TGCA 6 cut(s) 251, 543, 558, 660, 708, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 383, 398
HpyF3I CTNAG 2 cut(s) 216, 590
HpySE526I ACGT 5 cut(s) 228, 297, 679, 958, 1133
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 170, 499, 676
HspAI GCGC 2 cut(s) 5, 105
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 2 cut(s) 634, 778
Kzo9I GATC 6 cut(s) 100, 472, 634, 778, 855, 871
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 4 cut(s) 106, 263, 385, 503
LweI GCATC 7 cut(s) 34, 337, 373, 379, 385, 528, 545
MaeI CTAG 1 cut(s) 699
MaeII ACGT 5 cut(s) 228, 297, 679, 958, 1133
MaeIII GTNAC 2 cut(s) 675, 1066
MalI GATC 6 cut(s) 102, 474, 636, 780, 857, 873
MboI GATC 6 cut(s) 100, 472, 634, 778, 855, 871
MfeI CAATTG 1 cut(s) 878
MflI RGATCY 1 cut(s) 855
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 8 cut(s) 143, 527, 665, 848, 878, 1031, 1047, 1117
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1063
MmeI TCCRAC 1 cut(s) 109
MseI TTAA 5 cut(s) 90, 210, 333, 477, 1116
MspA1I CMGCKG 1 cut(s) 344
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 4 cut(s) 270, 307, 1028, 1081
MspR9I CCNGG 3 cut(s) 28, 149, 271
MunI CAATTG 1 cut(s) 878
Mva1269I GAATGC 2 cut(s) 974, 1061
MvaI CCWGG 2 cut(s) 28, 149
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 119, 383, 398
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 271
NdeII GATC 6 cut(s) 100, 472, 634, 778, 855, 871
NlaIII CATG 3 cut(s) 170, 499, 676
NlaIV GGNNCC 2 cut(s) 6, 39
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 675, 1066
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 2 cut(s) 974, 1061
PfeI GAWTC 3 cut(s) 58, 95, 624
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 6 cut(s) 121, 253, 319, 322, 400, 493
PleI GAGTC 1 cut(s) 1063
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
PpsI GAGTC 1 cut(s) 1063
Ppu21I YACGTR 1 cut(s) 680
PscI ACATGT 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 26, 147
PspCI CACGTG 1 cut(s) 680
PspGI CCWGG 2 cut(s) 26, 147
PspN4I GGNNCC 2 cut(s) 6, 39
PspPI GGNCC 2 cut(s) 24, 82
PsuI RGATCY 1 cut(s) 855
RsaI GTAC 4 cut(s) 171, 260, 732, 897
RsaNI GTAC 4 cut(s) 170, 259, 731, 896
SaqAI TTAA 5 cut(s) 90, 210, 333, 477, 1116
SatI GCNGC 6 cut(s) 120, 252, 318, 321, 399, 492
Sau3AI GATC 6 cut(s) 100, 472, 634, 778, 855, 871
Sau96I GGNCC 2 cut(s) 24, 82
SchI GAGTC 1 cut(s) 1063
ScrFI CCNGG 3 cut(s) 28, 149, 271
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 7 cut(s) 34, 337, 373, 379, 385, 528, 545
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 24, 82
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 8 cut(s) 143, 527, 665, 848, 878, 1031, 1047, 1117
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 547
SspMI CTAG 1 cut(s) 699
StyD4I CCNGG 3 cut(s) 26, 147, 269
TaaI ACNGT 4 cut(s) 339, 540, 730, 895
TaiI ACGT 5 cut(s) 231, 300, 682, 961, 1136
TaqI TCGA 1 cut(s) 714
TasI AATT 8 cut(s) 143, 527, 665, 848, 878, 1031, 1047, 1117
TatI WGTACW 1 cut(s) 169
TauI GCSGC 2 cut(s) 320, 323
TfiI GAWTC 3 cut(s) 58, 95, 624
Tru1I TTAA 5 cut(s) 90, 210, 333, 477, 1116
Tru9I TTAA 5 cut(s) 90, 210, 333, 477, 1116
TscAI CASTG 2 cut(s) 598, 868
TseFI GTSAC 2 cut(s) 675, 1066
TseI GCWGC 4 cut(s) 119, 251, 398, 491
Tsp45I GTSAC 2 cut(s) 675, 1066
TspDTI ATGAA 9 cut(s) 92, 512, 594, 661, 665, 776, 843, 921, 1091
TspGWI ACGGA 2 cut(s) 50, 88
TspRI CASTG 2 cut(s) 598, 868
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 24, 82
XapI RAATTY 3 cut(s) 143, 665, 1031
XceI RCATGY 1 cut(s) 170
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.