Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

39625293 .. 39626099

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTGGAAAAAAGAGCCTGACGTCGTATTTGAGAATCTCAAGAGGACGCGGGTGATAGTCAAACTCGAGGGTCGTGATTGGGACACGGCCATCACTGCGATCGGAGATGTCCTCAAAAAAATCAAAGAAGATGCTAAGCGAAGCGTACTCTTATCGATCGCCCACGCCGTCCAACAGGAACTCTATAAATCTAAGGAGATAGACGTGGAGACGATGAAAAACGTTGCATCCTATTACCCACTATGCGTGGAGGTTGATGATGACAATCTCGATGAAGACTGGATAACGGCCTATGATGATGTTAAATTGTCACCGGATGCGGATGCGGAGGACGGGAAGGCTGATGATCCGGATGAGGCTCCGGATGATGATGAGGAGGATGAAGATGAGGACGCGGATGGTGGCCTGGACTTTGCGTATTTGGATGAGGACGATGCAATTTATCAAATTCTTAAAAAGAGAGCAAACACAGATACAGAGGAGTTTAAAGAAGCAGGCATGAAAGAATTGAAGAAACGGTGCGATATTATGGGATGCAGTCTGAAACAAGGCCAAGACCAGGAAATCCTCAGTGTCATGATTTCCTTCTTTAGAGAACAAAAATTCAGAATTTATAACGAATGTCTGATGAAAACGTGCGTTGAAGCTTTCATGTCACGTGTCAAAGGTTATATTTCCAGTACTTGCATCCTCAACGACTCAACTACTGTGCTCAAAGCCGTTCAAAGCGTGGAGAAGGAGATTAGGGCTGATGCTTATCAACAGGTAATGCCTGAATCTTACAGCAATAGAACCCTTGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.64

Weight (kDa)

4.41

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AatII	GACGTC	1 cut(s)	24
AccII	CGCG	2 cut(s)	49, 395
AccIII	TCCGGA	2 cut(s)	349, 361
AciI	CCGC	4 cut(s)	49, 320, 326, 395
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	3 cut(s)	447, 602, 609
AcvI	CACGTG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	147, 682
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	511, 644, 725
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	405, 558
AluBI	AGCT	1 cut(s)	647
AluI	AGCT	1 cut(s)	647
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	65
Aor13HI	TCCGGA	2 cut(s)	349, 361
AoxI	GGCC	4 cut(s)	87, 288, 403, 550
ApoI	RAATTY	3 cut(s)	447, 602, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AsuHPI	GGTGA	2 cut(s)	64, 303
AvaI	CYCGRG	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	714
BccI	CCATC	2 cut(s)	98, 392
BceAI	ACGGC	4 cut(s)	102, 152, 303, 704
BciT130I	CCWGG	2 cut(s)	407, 560
BcoDI	GTCTC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	2 cut(s)	407, 560
BmeT110I	CYCGRG	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	407, 560
BmsI	GCATC	8 cut(s)	121, 236, 307, 313, 424, 524, 696, 742
BpiI	GAAGAC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	659
BsaBI	GATNNNNATC	2 cut(s)	264, 756
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	3 cut(s)	313, 349, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	284, 678
Bse8I	GATNNNNATC	2 cut(s)	264, 756
BseAI	TCCGGA	2 cut(s)	349, 361
BseBI	CCWGG	2 cut(s)	407, 560
BseCI	ATCGAT	1 cut(s)	155
BseJI	GATNNNNATC	2 cut(s)	264, 756
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	2 cut(s)	284, 678
BseRI	GAGGAG	2 cut(s)	389, 494
Bsh1236I	CGCG	2 cut(s)	49, 395
Bsh1285I	CGRYCG	2 cut(s)	102, 159
BshFI	GGCC	4 cut(s)	89, 290, 405, 552
BshVI	ATCGAT	1 cut(s)	155
BsiEI	CGRYCG	2 cut(s)	102, 159
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	314, 350, 362
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	4 cut(s)	89, 290, 405, 552
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp13I	TCCGGA	2 cut(s)	349, 361
Bsp143I	GATC	3 cut(s)	99, 156, 346
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	4 cut(s)	49, 320, 326, 395
BspANI	GGCC	4 cut(s)	89, 290, 405, 552
BspCNI	CTCAG	1 cut(s)	582
BspDI	ATCGAT	1 cut(s)	155
BspEI	TCCGGA	2 cut(s)	349, 361
BspFNI	CGCG	2 cut(s)	49, 395
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	284, 678
BssMI	GATC	3 cut(s)	99, 156, 346
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	407, 560
Bst4CI	ACNGT	2 cut(s)	519, 709
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	135, 192, 569
BstFNI	CGCG	2 cut(s)	49, 395
BstKTI	GATC	3 cut(s)	102, 159, 349
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	99, 156, 346
BstMCI	CGRYCG	2 cut(s)	102, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	2 cut(s)	407, 560
BstSCI	CCNGG	2 cut(s)	405, 558
BstUI	CGCG	2 cut(s)	49, 395
BstV2I	GAAGAC	1 cut(s)	282
Bsu15I	ATCGAT	1 cut(s)	155
BsuRI	GGCC	4 cut(s)	89, 290, 405, 552
BsuTUI	ATCGAT	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 577
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	576
ClaI	ATCGAT	1 cut(s)	155
CseI	GACGC	2 cut(s)	55, 401
Csp6I	GTAC	2 cut(s)	146, 681
CviAII	CATG	3 cut(s)	499, 577, 652
CviQI	GTAC	2 cut(s)	146, 681
DdeI	CTNAG	3 cut(s)	135, 192, 569
DpnI	GATC	3 cut(s)	101, 158, 348
DpnII	GATC	3 cut(s)	99, 156, 346
DraI	TTTAAA	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	405, 558
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	3 cut(s)	502, 580, 655
FaiI	YATR	9 cut(s)	186, 244, 294, 500, 530, 578, 615, 653, 672
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	3 cut(s)	498, 576, 651
FauI	CCCGC	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	89, 290, 405, 552
HapII	CCGG	3 cut(s)	314, 350, 362
HgaI	GACGC	2 cut(s)	55, 401
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	502, 580, 655
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	3 cut(s)	34, 698, 776
HpaII	CCGG	3 cut(s)	314, 350, 362
HphI	GGTGA	2 cut(s)	64, 303
Hpy188I	TCNGA	4 cut(s)	104, 543, 608, 627
Hpy188III	TCNNGA	6 cut(s)	40, 74, 269, 350, 362, 577
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	331, 595, 730
HpyCH4III	ACNGT	2 cut(s)	519, 709
HpyCH4IV	ACGT	5 cut(s)	21, 204, 222, 635, 658
HpyCH4V	TGCA	4 cut(s)	227, 437, 537, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	135, 192, 569
HpySE526I	ACGT	5 cut(s)	21, 204, 222, 635, 658
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	502, 580, 655
Kpn2I	TCCGGA	2 cut(s)	349, 361
Kzo9I	GATC	3 cut(s)	99, 156, 346
LmnI	GCTCC	1 cut(s)	364
LweI	GCATC	8 cut(s)	121, 236, 307, 313, 424, 524, 696, 742
MaeII	ACGT	5 cut(s)	21, 204, 222, 635, 658
MaeIII	GTNAC	2 cut(s)	309, 654
MalI	GATC	3 cut(s)	101, 158, 348
MboI	GATC	3 cut(s)	99, 156, 346
MboII	GAAGA	4 cut(s)	140, 287, 395, 523
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	6 cut(s)	305, 438, 447, 506, 602, 609
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	196
MroI	TCCGGA	2 cut(s)	349, 361
MseI	TTAA	3 cut(s)	303, 453, 486
MspI	CCGG	3 cut(s)	314, 350, 362
MspR9I	CCNGG	2 cut(s)	407, 560
MvaI	CCWGG	2 cut(s)	407, 560
MvnI	CGCG	2 cut(s)	49, 395
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	99, 156, 346
NlaIII	CATG	3 cut(s)	502, 580, 655
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	309, 654
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	34, 776
Ple19I	CGATCG	2 cut(s)	102, 159
PleI	GAGTC	1 cut(s)	692
PmaCI	CACGTG	1 cut(s)	659
PmlI	CACGTG	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	692
Ppu21I	YACGTR	1 cut(s)	659
PsiI	TTATAA	1 cut(s)	615
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	405, 558
PspCI	CACGTG	1 cut(s)	659
PspGI	CCWGG	2 cut(s)	405, 558
PspN4I	GGNNCC	1 cut(s)	360
PspXI	VCTCGAGB	1 cut(s)	65
PvuI	CGATCG	2 cut(s)	102, 159
RsaI	GTAC	2 cut(s)	147, 682
RsaNI	GTAC	2 cut(s)	146, 681
SaqAI	TTAA	3 cut(s)	303, 453, 486
Sau3AI	GATC	3 cut(s)	99, 156, 346
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	407, 560
SduI	GDGCHC	1 cut(s)	714
SetI	ASST	9 cut(s)	24, 207, 225, 255, 638, 649, 661, 670, 768
SfaNI	GCATC	8 cut(s)	121, 236, 307, 313, 424, 524, 696, 742
Sfr274I	CTCGAG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	38, 65
SmoI	CTYRAG	2 cut(s)	38, 65
Sse9I	AATT	6 cut(s)	305, 438, 447, 506, 602, 609
SsiI	CCGC	4 cut(s)	49, 320, 326, 395
StyD4I	CCNGG	2 cut(s)	405, 558
TaaI	ACNGT	2 cut(s)	519, 709
TaiI	ACGT	5 cut(s)	24, 207, 225, 638, 661
TaqI	TCGA	3 cut(s)	66, 155, 270
TasI	AATT	6 cut(s)	305, 438, 447, 506, 602, 609
TatI	WGTACW	1 cut(s)	680
TfiI	GAWTC	2 cut(s)	34, 776
Tru1I	TTAA	3 cut(s)	303, 453, 486
Tru9I	TTAA	3 cut(s)	303, 453, 486
TscAI	CASTG	2 cut(s)	100, 577
TseFI	GTSAC	2 cut(s)	309, 654
Tsp45I	GTSAC	2 cut(s)	309, 654
TspDTI	ATGAA	6 cut(s)	230, 288, 396, 515, 640, 644
TspRI	CASTG	2 cut(s)	100, 577
XapI	RAATTY	3 cut(s)	447, 602, 609
XhoI	CTCGAG	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.