Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

66910895 .. 66914733

Gene Structure 3839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGCCGAGAAACTTGCTCTGGCCGTGGAAAACGGAGCCCGATGACGTGTTTGAGAATCTCCAATGGACGCGGATGAAGGTCCAATTTAAGGATTCTGATCGGGCAGAGGCCATCGCTGCCATCGAAGATGTCCTCAAAAAATTCCAGGAAGATGATAAGCGACATGTACTCTTCTCAATCGCCTACGCCATCCAAAAGGAGCTCTTTAAATCTGAGGAGATAGACGTGGAGATAATAAAAAAAGTTGCAGCGTTGTACCCACGCACCGGGGAGGATGACGACGACCACCACCACTATGACAACTGGCTGACGGCGGCGGCGGGTGATTTTAAACTGTCAGCGGATGCGGAGGAGGAGGAGGGGGAGGATGAGGCTCATGATGCTGATACTGCGGATGAGGAATGGGAGGAGTATGTAAGTGAGGATGAGGATGAGGATGAGGATGAGGCGGTGGCGGTGGCGGGGATGATGATGATCTTAAAAAAGAGAGAAGCAGCCATGAAGGAGTTTGAAGAAGCAGGCATCAAGGAATTGAAGCGACAGTGCAATATTATGGGATGCAGTCTGAAACAAGGCCAAGAGCAGGAAATCCTCAGTTTGATGACGAATATAGGATGGAAATGTGCATTGAACATTTCATGTCACGCGCGTGGCAAAGGTTATATTTCTACGTCTTGCATCCTCAACGGTTTGGAGACAGTGCTCAAAGCCGTTGAAAGTGTGAAGAAGGAGAGTGAGGCTGATGCTGATCAAGTTCATCAACAGTTGGGAAAGAATACTGTACCTACTAATGAAGAAGGGATTGCTACCCCCATGAACCAGTTAAAACAAGAGAAAAGGATCCTTCAACCTGCCAGAACAAGAAGAAATCTGCCTCACACCGCCGTAAGTTCCTCGAATCACCTCTCTGGTTGTTTGGAATGTGAAGATATGAAAACTGAAAAATGCGAGATTGCGACTCCTATGAACCAGCCAGAGCAAGAAGAAAATATCTGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

37.92

Weight (kDa)

4.61

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	862
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	73, 650, 652
AclWI	GGATC	2 cut(s)	838, 851
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	171, 260, 786
AfiI	CCNNNNNNNGG	3 cut(s)	91, 269, 586
AflIII	ACRYGT	2 cut(s)	48, 166
AgsI	TTSAA	5 cut(s)	515, 538, 634, 719, 851
AjiI	CACGTC	2 cut(s)	49, 229
AjnI	CCWGG	1 cut(s)	147
AleI	CACNNNNGTG	1 cut(s)	651
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	2 cut(s)	207, 708
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	838, 851
AoxI	GGCC	3 cut(s)	23, 111, 577
ApeKI	GCWGC	3 cut(s)	119, 251, 497
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	7, 652
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	338, 896
AvaII	GGWCC	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	843
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	42, 207
Bbv12I	GWGCWC	2 cut(s)	207, 708
BbvI	GCAGC	3 cut(s)	106, 263, 509
BccI	CCATC	4 cut(s)	122, 131, 200, 612
BceAI	ACGGC	4 cut(s)	10, 330, 698, 872
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	1 cut(s)	1003
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	862
BisI	GCNGC	5 cut(s)	120, 252, 318, 321, 498
BlsI	GCNGC	5 cut(s)	121, 253, 319, 322, 499
Bme1390I	CCNGG	2 cut(s)	149, 271
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	2 cut(s)	49, 229
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	6, 39, 845
BmrFI	CCNGG	2 cut(s)	149, 271
BmsI	GCATC	6 cut(s)	337, 373, 534, 551, 690, 736
BpuMI	CCSGG	1 cut(s)	271
BsaBI	GATNNNNATC	3 cut(s)	99, 476, 750
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	26, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 269, 586
Bse1I	ACTGG	2 cut(s)	311, 823
Bse8I	GATNNNNATC	3 cut(s)	99, 476, 750
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	26, 270
BseJI	GATNNNNATC	3 cut(s)	99, 476, 750
BseLI	CCNNNNNNNGG	3 cut(s)	91, 269, 586
BseMII	CTCAG	2 cut(s)	207, 610
BseNI	ACTGG	2 cut(s)	311, 823
BseRI	GAGGAG	5 cut(s)	233, 368, 371, 374, 425
BseXI	GCAGC	3 cut(s)	106, 263, 509
Bsh1236I	CGCG	3 cut(s)	73, 650, 652
BshFI	GGCC	3 cut(s)	25, 113, 579
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	207, 708
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	3 cut(s)	91, 269, 586
BsmAI	GTCTC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	25, 113, 579
Bsp1286I	GDGCHC	3 cut(s)	42, 207, 708
Bsp143I	GATC	4 cut(s)	100, 477, 751, 843
BspANI	GGCC	3 cut(s)	25, 113, 579
BspCNI	CTCAG	2 cut(s)	208, 609
BspFNI	CGCG	3 cut(s)	73, 650, 652
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	6, 39, 845
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	2 cut(s)	838, 851
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	311, 823
BssECI	CCNNGG	2 cut(s)	26, 270
BssMI	GATC	4 cut(s)	100, 477, 751, 843
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	6 cut(s)	339, 546, 692, 703, 768, 784
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	216, 596
BstDSI	CCRYGG	1 cut(s)	26
BstFNI	CGCG	3 cut(s)	73, 650, 652
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 652
BstKTI	GATC	4 cut(s)	103, 480, 754, 846
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	4 cut(s)	100, 477, 751, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 383, 392
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	147, 269
BstUI	CGCG	3 cut(s)	73, 650, 652
BstV1I	GCAGC	3 cut(s)	106, 263, 509
BstX2I	RGATCY	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	843
BsuRI	GGCC	3 cut(s)	25, 113, 579
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	100
BtrI	CACGTC	2 cut(s)	49, 229
BtsIMutI	CAGTG	2 cut(s)	551, 708
BveI	ACCTGC	1 cut(s)	862
Cac8I	GCNNGC	1 cut(s)	523
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	7, 652
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	170, 259, 785
CviAII	CATG	5 cut(s)	167, 380, 502, 642, 817
CviQI	GTAC	3 cut(s)	170, 259, 785
DdeI	CTNAG	2 cut(s)	216, 596
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	102, 479, 753, 845
DpnII	GATC	4 cut(s)	100, 477, 751, 843
DraI	TTTAAA	2 cut(s)	211, 334
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	2 cut(s)	42, 207
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	42, 207
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	5 cut(s)	170, 383, 505, 645, 820
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	5 cut(s)	166, 379, 501, 641, 816
FauI	CCCGC	2 cut(s)	316, 457
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	5 cut(s)	120, 252, 318, 321, 498
FriOI	GRGCYC	2 cut(s)	42, 207
Fsp4HI	GCNGC	5 cut(s)	120, 252, 318, 321, 498
FspBI	CTAG	1 cut(s)	1003
GlaI	GCGC	2 cut(s)	6, 651
GluI	GCNGC	5 cut(s)	120, 252, 318, 321, 498
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	25, 113, 579
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	7, 652
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	170, 383, 505, 645, 820
Hin6I	GCGC	2 cut(s)	5, 650
HinP1I	GCGC	2 cut(s)	5, 650
HinfI	GANTC	4 cut(s)	58, 95, 901, 961
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	338, 896
Hpy188I	TCNGA	3 cut(s)	100, 217, 570
Hpy188III	TCNNGA	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	5 cut(s)	73, 499, 724, 794, 857
HpyCH4III	ACNGT	6 cut(s)	339, 546, 692, 703, 768, 784
HpyCH4IV	ACGT	3 cut(s)	48, 228, 674
HpyCH4V	TGCA	6 cut(s)	251, 549, 564, 629, 681, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 383, 392
HpyF3I	CTNAG	2 cut(s)	216, 596
HpySE526I	ACGT	3 cut(s)	48, 228, 674
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	170, 383, 505, 645, 820
HspAI	GCGC	2 cut(s)	5, 650
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	100, 477, 751, 843
LmnI	GCTCC	2 cut(s)	37, 202
Lsp1109I	GCAGC	3 cut(s)	106, 263, 509
LweI	GCATC	6 cut(s)	337, 373, 534, 551, 690, 736
MaeI	CTAG	1 cut(s)	1003
MaeII	ACGT	3 cut(s)	48, 228, 674
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	4 cut(s)	102, 479, 753, 845
MboI	GATC	4 cut(s)	100, 477, 751, 843
MboII	GAAGA	9 cut(s)	140, 164, 166, 527, 739, 809, 879, 941, 998
MflI	RGATCY	1 cut(s)	843
MhlI	GDGCHC	3 cut(s)	42, 207, 708
MluCI	AATT	3 cut(s)	86, 143, 533
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	955
MseI	TTAA	5 cut(s)	90, 210, 333, 482, 827
MslI	CAYNNNNRTG	2 cut(s)	297, 651
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	149, 271
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	3 cut(s)	73, 650, 652
MwoI	GCNNNNNNNGC	3 cut(s)	119, 383, 392
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	4 cut(s)	100, 477, 751, 843
NlaIII	CATG	5 cut(s)	170, 383, 505, 645, 820
NlaIV	GGNNCC	3 cut(s)	6, 39, 845
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	651
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	58, 95, 901
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	121, 253, 319, 322, 499
PleI	GAGTC	1 cut(s)	955
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	955
PscI	ACATGT	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	6, 39, 845
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	843
RsaI	GTAC	3 cut(s)	171, 260, 786
RsaNI	GTAC	3 cut(s)	170, 259, 785
RseI	CAYNNNNRTG	2 cut(s)	297, 651
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	5 cut(s)	90, 210, 333, 482, 827
SatI	GCNGC	5 cut(s)	120, 252, 318, 321, 498
Sau3AI	GATC	4 cut(s)	100, 477, 751, 843
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	955
ScrFI	CCNGG	2 cut(s)	149, 271
SduI	GDGCHC	3 cut(s)	42, 207, 708
SetI	ASST	9 cut(s)	51, 84, 207, 231, 664, 677, 790, 856, 909
SfaNI	GCATC	6 cut(s)	337, 373, 534, 551, 690, 736
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	297, 651
Sse9I	AATT	3 cut(s)	86, 143, 533
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	1003
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	147, 269
TaaI	ACNGT	6 cut(s)	339, 546, 692, 703, 768, 784
TaiI	ACGT	3 cut(s)	51, 231, 677
TaqI	TCGA	2 cut(s)	126, 899
TasI	AATT	3 cut(s)	86, 143, 533
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	2 cut(s)	320, 323
TfiI	GAWTC	3 cut(s)	58, 95, 901
Tru1I	TTAA	5 cut(s)	90, 210, 333, 482, 827
Tru9I	TTAA	5 cut(s)	90, 210, 333, 482, 827
TscAI	CASTG	2 cut(s)	551, 708
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	3 cut(s)	119, 251, 497
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	8 cut(s)	92, 518, 630, 749, 810, 833, 950, 983
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	551, 708
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.