Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

23565711 .. 23570420

Gene Structure 4710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30381.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAGAGAGTCTTGACCACGCCGTGGAAAAAGGAGCCGGAGGTCGTGTTTGAGGATCTCGAATGGACGCGGGTGAAGGTCGAACTTGAGGACCATGACCGCAAAACGGCCATCAATGCCATCGAAGATGTCCTCGAAAAAGTACAGGAAGATTGTGATAAGCGACATGTACTCTTCCTAATCACCTACGTCGTCCAACAGGAACTTTTTAAATCAAGGGAGATAGACGTGCAGACAGTACAAAAAGTTGCATCGTTTTACCCACGGTGCGTGGAGATTGACGACGACGACAAGGACGATTACAACTGGCTGACGGTGTATGATGATTTTAAACTGTCAGCGGATAAGGTGGGGGATGCTGATGAGGGTGATGTTGCTGATGCTGCGGATCAGAGTGATGTTACTGACGCTGCGGATGAGGATATGGAGGTTGATGATGTTGATGTTGATGTTGATGATGATGATGTTGATGATGATATTGATGATGATGTTAATGATGATATTGATGATGATGTTGATGATGTTGATGATGATATTGATGATGTTGATGATGGTGATGCTGCGGATGAGGCTGGTATTGCCGACCCTGCGGATGAGGCTGGTATTGCCGACGCTGCGGCTGAGGATAATGCGTTTTTAAATTTTCTGAAAAAGAGAGAAAAGAGAGAAGCCAAGGATTTTGAAGAAGCAGGGGTGAATGAATTGAAGCGACAGAGCACTATTATGGGTTGCAGTCTGAAAAAAGGCCAAGAGAAGGAGATCCTCAGGGTACTGATTGCATTCTTTGCCAAACAAAATTTCAGAATTGTTGACGAGTATAGGATGGAAATGTGCGTTGAAGATTTCATGTCACGTGTCAAAGGTTATATTTCTAGTACTTGCACCCTCAAAGACCCAAGTACGGTTCTCAAAGCCGTTCAGATTGTGAAGAAGAAGATTATGGCTGATGCTGATCCTGCTGTTCATCAACAGTTGGAAAACAATACTGTACCAACTAATGAAGAAGGGACGTCTGAATGCGAGATTGCAACCACCTTTAACCTGCCAGAACAAGATGAAATCTGCCTCACACCGCCGGACTGTGAAAATACCAAAACTGAAGACTGCTGGTTTGCGACTCCTATGAACCAGCCAGAACAAGAACAGAAAAATATGGACGATGTTAACTTCTGCCTCACAACACTATGGGAAGATATGAAAACGGGAGAATGTGCTAGGAACAGATCTAAGAGAAAGCTCGCTCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

47.31

Weight (kDa)

4.12

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1013
Acc36I	ACCTGC	1 cut(s)	1050
AccB7I	CCANNNNNTGG	1 cut(s)	24
AccII	CGCG	1 cut(s)	70
AciI	CCGC	9 cut(s)	70, 100, 341, 386, 413, 563, 590, 617, 1073
AclWI	GGATC	4 cut(s)	63, 396, 754, 947
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	640, 796
AcuI	CTGAAG	1 cut(s)	1119
AcvI	CACGTG	1 cut(s)	854
AcyI	GRCGYC	1 cut(s)	1010
AdeI	CACNNNGTG	1 cut(s)	24
AfaI	GTAC	7 cut(s)	144, 171, 240, 771, 877, 901, 990
AfiI	CCNNNNNNNGG	4 cut(s)	24, 106, 754, 901
AflIII	ACRYGT	2 cut(s)	166, 853
AgsI	TTSAA	3 cut(s)	683, 706, 839
AjiI	CACGTC	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	2 cut(s)	1237, 1246
AluI	AGCT	2 cut(s)	1237, 1246
Alw21I	GWGCWC	1 cut(s)	719
AlwI	GGATC	4 cut(s)	63, 396, 754, 947
AoxI	GGCC	2 cut(s)	108, 745
ApeKI	GCWGC	4 cut(s)	383, 410, 560, 614
ApoI	RAATTY	2 cut(s)	640, 796
ArsI	GACNNNNNNTTYG	2 cut(s)	1094, 1126
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	5 cut(s)	85, 175, 380, 566, 706
AvaII	GGWCC	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	764
BbrPI	CACGTG	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	1107
Bbv12I	GWGCWC	1 cut(s)	719
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	370, 397, 547, 601
BccI	CCATC	4 cut(s)	119, 128, 545, 817
BceAI	ACGGC	3 cut(s)	7, 123, 899
BfaI	CTAG	2 cut(s)	873, 1215
BfuAI	ACCTGC	1 cut(s)	1050
BglII	AGATCT	1 cut(s)	1223
BisI	GCNGC	5 cut(s)	384, 411, 561, 615, 618
BlpI	GCTNAGC	1 cut(s)	1242
BlsI	GCNGC	5 cut(s)	385, 412, 562, 616, 619
BmcAI	AGTACT	1 cut(s)	877
Bme18I	GGWCC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	5 cut(s)	260, 346, 370, 547, 937
BpiI	GAAGAC	1 cut(s)	1107
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	854
BsaBI	GATNNNNATC	1 cut(s)	951
BsaHI	GRCGYC	1 cut(s)	1010
BsaJI	CCNNGG	3 cut(s)	23, 263, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 106, 754, 901
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	764
Bse8I	GATNNNNATC	1 cut(s)	951
BseDI	CCNNGG	3 cut(s)	23, 263, 672
BseGI	GGATG	5 cut(s)	361, 421, 571, 598, 828
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	4 cut(s)	24, 106, 754, 901
BseMII	CTCAG	2 cut(s)	612, 778
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	370, 397, 547, 601
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	110, 747
BsiHKAI	GWGCWC	1 cut(s)	719
BsiSI	CCGG	2 cut(s)	38, 1076
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	4 cut(s)	24, 106, 754, 901
BsmFI	GGGAC	1 cut(s)	1021
BsmI	GAATGC	2 cut(s)	779, 1022
BsnI	GGCC	2 cut(s)	110, 747
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp143I	GATC	5 cut(s)	55, 388, 759, 952, 1223
Bsp1720I	GCTNAGC	1 cut(s)	1242
BspACI	CCGC	9 cut(s)	70, 100, 341, 386, 413, 563, 590, 617, 1073
BspANI	GGCC	2 cut(s)	110, 747
BspCNI	CTCAG	2 cut(s)	613, 777
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	1050
BspPI	GGATC	4 cut(s)	63, 396, 754, 947
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	3 cut(s)	23, 263, 672
BssMI	GATC	5 cut(s)	55, 388, 759, 952, 1223
BssNI	GRCGYC	1 cut(s)	1010
BssT1I	CCWWGG	1 cut(s)	672
Bst4CI	ACNGT	8 cut(s)	238, 267, 316, 336, 904, 972, 988, 1082
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	1010
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	854
BstC8I	GCNNGC	1 cut(s)	1239
BstDEI	CTNAG	4 cut(s)	621, 764, 1227, 1242
BstDSI	CCRYGG	2 cut(s)	23, 263
BstF5I	GGATG	5 cut(s)	361, 421, 571, 598, 828
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	5 cut(s)	58, 391, 762, 955, 1226
BstMBI	GATC	5 cut(s)	55, 388, 759, 952, 1223
BstNSI	RCATGY	1 cut(s)	170
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	370, 397, 547, 601
BstV2I	GAAGAC	1 cut(s)	1107
BstX2I	RGATCY	3 cut(s)	55, 759, 1223
BstYI	RGATCY	3 cut(s)	55, 759, 1223
Bsu36I	CCTNAGG	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	110, 747
BtgI	CCRYGG	2 cut(s)	23, 263
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	5 cut(s)	361, 421, 571, 598, 828
BveI	ACCTGC	1 cut(s)	1050
Cac8I	GCNNGC	1 cut(s)	1239
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	3 cut(s)	76, 416, 620
Csp6I	GTAC	7 cut(s)	143, 170, 239, 770, 876, 900, 989
CviAII	CATG	3 cut(s)	95, 167, 847
CviQI	GTAC	7 cut(s)	143, 170, 239, 770, 876, 900, 989
DdeI	CTNAG	4 cut(s)	621, 764, 1227, 1242
DpnI	GATC	5 cut(s)	57, 390, 761, 954, 1225
DpnII	GATC	5 cut(s)	55, 388, 759, 952, 1223
DraI	TTTAAA	3 cut(s)	211, 331, 639
DraIII	CACNNNGTG	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	1119
Eco72I	CACGTG	1 cut(s)	854
Eco81I	CCTNAGG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	3 cut(s)	98, 170, 850
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	3 cut(s)	94, 166, 846
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	384, 411, 561, 615, 618
FokI	GGATG	5 cut(s)	368, 428, 578, 605, 835
Fsp4HI	GCNGC	5 cut(s)	384, 411, 561, 615, 618
FspBI	CTAG	2 cut(s)	873, 1215
GluI	GCNGC	5 cut(s)	384, 411, 561, 615, 618
HaeIII	GGCC	2 cut(s)	110, 747
HapII	CCGG	2 cut(s)	38, 1076
HgaI	GACGC	3 cut(s)	76, 416, 620
Hin1I	GRCGYC	1 cut(s)	1010
Hin1II	CATG	3 cut(s)	98, 170, 850
HincII	GTYRAC	2 cut(s)	811, 1165
HindII	GTYRAC	2 cut(s)	811, 1165
HinfI	GANTC	2 cut(s)	9, 1117
HpaI	GTTAAC	1 cut(s)	1165
HpaII	CCGG	2 cut(s)	38, 1076
HphI	GGTGA	5 cut(s)	85, 175, 380, 566, 706
Hpy166II	GTNNAC	2 cut(s)	811, 1165
Hpy188I	TCNGA	6 cut(s)	393, 648, 738, 803, 921, 1015
Hpy188III	TCNNGA	2 cut(s)	13, 59
Hpy8I	GTNNAC	2 cut(s)	811, 1165
Hpy99I	CGWCG	4 cut(s)	194, 287, 290, 614
HpyAV	CCTTC	3 cut(s)	70, 748, 998
HpyCH4III	ACNGT	8 cut(s)	238, 267, 316, 336, 904, 972, 988, 1082
HpyCH4IV	ACGT	4 cut(s)	189, 228, 853, 1010
HpyCH4V	TGCA	6 cut(s)	232, 251, 732, 779, 882, 1028
HpyF3I	CTNAG	4 cut(s)	621, 764, 1227, 1242
HpySE526I	ACGT	4 cut(s)	189, 228, 853, 1010
Hsp92I	GRCGYC	1 cut(s)	1010
Hsp92II	CATG	3 cut(s)	98, 170, 850
KspAI	GTTAAC	1 cut(s)	1165
Kzo9I	GATC	5 cut(s)	55, 388, 759, 952, 1223
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	370, 397, 547, 601
LweI	GCATC	5 cut(s)	260, 346, 370, 547, 937
MaeI	CTAG	2 cut(s)	873, 1215
MaeII	ACGT	4 cut(s)	189, 228, 853, 1010
MaeIII	GTNAC	2 cut(s)	400, 849
MalI	GATC	5 cut(s)	57, 390, 761, 954, 1225
MboI	GATC	5 cut(s)	55, 388, 759, 952, 1223
MflI	RGATCY	3 cut(s)	55, 759, 1223
MhlI	GDGCHC	1 cut(s)	719
MluCI	AATT	4 cut(s)	640, 701, 796, 804
MlyI	GAGTC	2 cut(s)	18, 1111
MmeI	TCCRAC	2 cut(s)	220, 954
MseI	TTAA	7 cut(s)	210, 330, 492, 638, 1038, 1164, 1249
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	38, 1076
Mva1269I	GAATGC	2 cut(s)	779, 1022
MvnI	CGCG	1 cut(s)	70
NdeII	GATC	5 cut(s)	55, 388, 759, 952, 1223
NlaIII	CATG	3 cut(s)	98, 170, 850
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	849
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	2 cut(s)	779, 1022
PflMI	CCANNNNNTGG	1 cut(s)	24
PkrI	GCNGC	5 cut(s)	385, 412, 562, 616, 619
PleI	GAGTC	2 cut(s)	17, 1111
PmaCI	CACGTG	1 cut(s)	854
PmlI	CACGTG	1 cut(s)	854
PpsI	GAGTC	2 cut(s)	17, 1111
Ppu21I	YACGTR	1 cut(s)	854
PscI	ACATGT	1 cut(s)	166
PspCI	CACGTG	1 cut(s)	854
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	3 cut(s)	55, 759, 1223
RsaI	GTAC	7 cut(s)	144, 171, 240, 771, 877, 901, 990
RsaNI	GTAC	7 cut(s)	143, 170, 239, 770, 876, 900, 989
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	7 cut(s)	210, 330, 492, 638, 1038, 1164, 1249
SatI	GCNGC	5 cut(s)	384, 411, 561, 615, 618
Sau3AI	GATC	5 cut(s)	55, 388, 759, 952, 1223
Sau96I	GGNCC	1 cut(s)	91
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	2 cut(s)	18, 1111
SduI	GDGCHC	1 cut(s)	719
SfaNI	GCATC	5 cut(s)	260, 346, 370, 547, 937
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	640, 701, 796, 804
SsiI	CCGC	9 cut(s)	70, 100, 341, 386, 413, 563, 590, 617, 1073
SspMI	CTAG	2 cut(s)	873, 1215
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	8 cut(s)	238, 267, 316, 336, 904, 972, 988, 1082
TaiI	ACGT	4 cut(s)	192, 231, 856, 1013
TaqI	TCGA	4 cut(s)	60, 81, 123, 135
TasI	AATT	4 cut(s)	640, 701, 796, 804
TatI	WGTACW	4 cut(s)	142, 169, 238, 875
TauI	GCSGC	1 cut(s)	620
Tru1I	TTAA	7 cut(s)	210, 330, 492, 638, 1038, 1164, 1249
Tru9I	TTAA	7 cut(s)	210, 330, 492, 638, 1038, 1164, 1249
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	4 cut(s)	383, 410, 560, 614
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	8 cut(s)	17, 714, 835, 953, 1014, 1071, 1139, 1211
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	640, 796
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	2 cut(s)	873, 1215
ZraI	GACGTC	1 cut(s)	1011
ZrmI	AGTACT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.