Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

39628243 .. 39629119

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGAGAAACTTCATCTGGATGTGGAAAAAGGAGCCCGACGTCGTGTTTGAGAATCTCAAGAGGACGCGGGTGATGGTCAAACTTGATGATCGTGATTGGGACACGGCCATCACTGCCATCGGAGATGTCCTCAAAGTAATCAAAGAAGATGCTAAGCGAAGTGTACTCTTATCGATCGCCCACGCCGTCCAACAGGAACTCTTTAAATCTAAGGAGATCGACGTGGAGACAATAAGAAAGGTTGCGGCGTTTTACCCACGGTGCGTGGAGGTTGATGATGACAAGTACGATGACGACTATATAACGGCCTATGCTGATTTTAAATTGACACCGGATGCCGAGGAGGTCGTGGATGAGGCTGATGGTGCCGATGATGATGATGAGGGTGAGGGTGAGGGTGAGGATGAGGATGAGTGGACCCTTCTTGCGGATGAGGAGGACGATGAGTTTCTTCGTTTTCTTAATACAGATCCCATGGAGTTTGAGGAAGCAGGCATCAATGAATTGAAGAAACAGTGCAATATTATGGGATGCAGTCTGAAACAAGGCCAAGAGCGACAAATCATTAGTTTCATTGTTTCATTCTTTACCGGAAAAAATTTCAAAATTTATGACGAATCAAGGATGGAAATGTTCGTTGAAGATTTCATGTCAAAGGTCAAAGGTTATATTTCCAGTACTTGCATACTCAACGACCCAACTACTGTGCTCAAGGCCGTCAGAAGTGTGGAGAAGAATATTAGGGCTGATGCTTATGCTGTTCATCAACCGGTAATGCCTGAATCCTTTTCGGATTACAAGTTTACAACAATAGAACCCTTGTTTGTTAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

32.28

Weight (kDa)

4.36

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	1 cut(s)	70
AciI	CCGC	3 cut(s)	70, 248, 431
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	601, 609
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	168, 290, 682
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgeI	ACCGGT	1 cut(s)	772
AgsI	TTSAA	3 cut(s)	511, 607, 644
AjiI	CACGTC	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	4 cut(s)	108, 309, 550, 717
ApoI	RAATTY	2 cut(s)	601, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AsiGI	ACCGGT	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	420
AsuHPI	GGTGA	4 cut(s)	85, 401, 407, 413
AvaII	GGWCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	714
BccI	CCATC	5 cut(s)	70, 119, 128, 359, 622
BceAI	ACGGC	4 cut(s)	123, 173, 324, 704
BcoDI	GTCTC	1 cut(s)	224
BisI	GCNGC	1 cut(s)	249
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	250
BmcAI	AGTACT	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	3 cut(s)	36, 370, 422
BmsI	GCATC	5 cut(s)	142, 328, 507, 524, 742
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	44, 698
Bsa29I	ATCGAT	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	260, 342, 477
BsaWI	WCCGGW	3 cut(s)	334, 593, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	260, 342, 477
BseGI	GGATG	8 cut(s)	27, 343, 361, 412, 418, 439, 539, 633
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	678
BseRI	GAGGAG	2 cut(s)	359, 452
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	4 cut(s)	110, 311, 552, 719
BshNI	GGYRCC	1 cut(s)	368
BshTI	ACCGGT	1 cut(s)	772
BshVI	ATCGAT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	3 cut(s)	335, 594, 773
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	110, 311, 552, 719
Bsp1286I	GDGCHC	2 cut(s)	39, 714
Bsp143I	GATC	4 cut(s)	91, 177, 219, 472
Bsp1720I	GCTNAGC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	3 cut(s)	70, 248, 431
BspANI	GGCC	4 cut(s)	110, 311, 552, 719
BspDI	ATCGAT	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	36, 370, 422
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	1 cut(s)	678
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	3 cut(s)	260, 342, 477
BssMI	GATC	4 cut(s)	91, 177, 219, 472
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	264, 519, 709
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	2 cut(s)	156, 213
BstDSI	CCRYGG	2 cut(s)	260, 477
BstF5I	GGATG	8 cut(s)	27, 343, 361, 412, 418, 439, 539, 633
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	4 cut(s)	94, 180, 222, 475
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	91, 177, 219, 472
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 368
BstUI	CGCG	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	110, 311, 552, 719
BsuTUI	ATCGAT	1 cut(s)	176
BtgI	CCRYGG	2 cut(s)	260, 477
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	8 cut(s)	27, 343, 361, 412, 418, 439, 539, 633
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 524
Cac8I	GCNNGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	1 cut(s)	420
ClaI	ATCGAT	1 cut(s)	176
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	167, 289, 681
CspAI	ACCGGT	1 cut(s)	772
CviAII	CATG	2 cut(s)	478, 652
CviJI	RGCY	7 cut(s)	37, 110, 311, 362, 552, 719, 749
CviKI_1	RGCY	7 cut(s)	37, 110, 311, 362, 552, 719, 749
CviQI	GTAC	3 cut(s)	167, 289, 681
DdeI	CTNAG	2 cut(s)	156, 213
DpnI	GATC	4 cut(s)	93, 179, 221, 474
DpnII	GATC	4 cut(s)	91, 177, 219, 472
DraI	TTTAAA	2 cut(s)	208, 325
EaeI	YGGCCR	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	2 cut(s)	481, 655
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	477, 651
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	8 cut(s)	34, 350, 368, 419, 425, 446, 546, 640
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	4 cut(s)	110, 311, 552, 719
HapII	CCGG	3 cut(s)	335, 594, 773
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	481, 655
HinfI	GANTC	3 cut(s)	55, 620, 785
HpaII	CCGG	3 cut(s)	335, 594, 773
HphI	GGTGA	4 cut(s)	85, 401, 407, 413
Hpy166II	GTNNAC	3 cut(s)	167, 420, 807
Hpy188I	TCNGA	4 cut(s)	125, 543, 725, 796
Hpy188III	TCNNGA	3 cut(s)	19, 61, 95
Hpy8I	GTNNAC	3 cut(s)	167, 420, 807
Hpy99I	CGWCG	3 cut(s)	44, 47, 227
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	3 cut(s)	264, 519, 709
HpyCH4IV	ACGT	2 cut(s)	42, 225
HpyCH4V	TGCA	3 cut(s)	522, 537, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 368
HpyF3I	CTNAG	2 cut(s)	156, 213
HpySE526I	ACGT	2 cut(s)	42, 225
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	481, 655
Kzo9I	GATC	4 cut(s)	91, 177, 219, 472
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	4, 182, 348, 480, 607, 691, 786, 795
LweI	GCATC	5 cut(s)	142, 328, 507, 524, 742
MaeII	ACGT	2 cut(s)	42, 225
MalI	GATC	4 cut(s)	93, 179, 221, 474
MboI	GATC	4 cut(s)	91, 177, 219, 472
MboII	GAAGA	5 cut(s)	161, 446, 523, 656, 748
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	2 cut(s)	39, 714
MluCI	AATT	4 cut(s)	326, 506, 601, 609
MmeI	TCCRAC	1 cut(s)	217
MseI	TTAA	3 cut(s)	207, 324, 465
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	3 cut(s)	335, 594, 773
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	116, 368
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	4 cut(s)	91, 177, 219, 472
NlaIII	CATG	2 cut(s)	481, 655
NlaIV	GGNNCC	3 cut(s)	36, 370, 422
NmeAIII	GCCGAG	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	55, 620, 785
PinAI	ACCGGT	1 cut(s)	772
PkrI	GCNGC	1 cut(s)	250
Ple19I	CGATCG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	36, 370, 422
PspPI	GGNCC	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	472
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	3 cut(s)	168, 290, 682
RsaNI	GTAC	3 cut(s)	167, 289, 681
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	207, 324, 465
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	4 cut(s)	91, 177, 219, 472
Sau96I	GGNCC	1 cut(s)	420
ScaI	AGTACT	1 cut(s)	682
SduI	GDGCHC	2 cut(s)	39, 714
SetI	ASST	7 cut(s)	45, 228, 246, 276, 351, 663, 670
SfaNI	GCATC	5 cut(s)	142, 328, 507, 524, 742
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	59, 713
SmoI	CTYRAG	2 cut(s)	59, 713
Sse9I	AATT	4 cut(s)	326, 506, 601, 609
SsiI	CCGC	3 cut(s)	70, 248, 431
SspI	AATATT	2 cut(s)	526, 742
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	264, 519, 709
TaiI	ACGT	2 cut(s)	45, 228
TaqI	TCGA	2 cut(s)	176, 222
TasI	AATT	4 cut(s)	326, 506, 601, 609
TatI	WGTACW	2 cut(s)	166, 680
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	55, 620, 785
Tru1I	TTAA	3 cut(s)	207, 324, 465
Tru9I	TTAA	3 cut(s)	207, 324, 465
TscAI	CASTG	2 cut(s)	121, 524
TspDTI	ATGAA	6 cut(s)	4, 519, 565, 573, 640, 755
TspRI	CASTG	2 cut(s)	121, 524
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	2 cut(s)	601, 609
ZraI	GACGTC	1 cut(s)	43
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.