Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009881.1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

32579 .. 33793

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009881.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgacatactcagtaaaaaaccctcctgcaaagagcaaatatacccttcaaatccgctatggtggacactttgaaactgagagtgatcctacttatcaaaactaccaaaactatactggagaaagagcgatttgggttgaaaatcttgataattattcgggaaaggcttgttggagtgacgtcaatgatcttgcaagtaagctgggctaccaaaatactcgggaaatacatagaaggcataaaggacgtctgttggaaattacttctcacgatgatgtaaccgaaatgattagtcaacttggagctaatcgagagttggtactgtatattgttggacagagagaagaggaagcacaggcacaaaatcctacaattctatcttggaactgtcgtggacttaacaggccatcaaccagggctatgttaagagttcttattctgacatatgatcccacgattattattcttatagagactcgcctgtcatcctcggctattgggaaaatctctcactttctggggtttcaaaattttagggcttcctctgccgaaagaaatgtgtcttatgttaagaatttcactgccaacacaaatgaggatgaggaccaggatcaggatcaggatcaggatgattcagataattgtgttggattggccgtgttatggaaatcaaatataaagttggagttgtctgataactcagacaactatcttgattttgaggttgaggtccctggtactgataaaatttggaagtttacagcattttatggacacccgacaaaaaagagactctcatggatgtggctggagcaattaaaattttcaaatgatagatcacaaatatctgaatggttagttgttggggatcttaatgaaatttccaatcaaacagagaaaatgggtggaagcgcgaagaatccagcggatatatcaaggttcacggagtgcttggaaaaatgtagtcttcaagatttgtcttttgagggtgataactttacgtggacaggccctggaggagtcagagagaggcttgataggggagtggcgtcatggacttggataaaattatttcctcatcatgccaaggtactacatcttactgataaaacaatctcagatcacattcctatattggttgaaactgatagtcgaaaacaaaaggtgttaaagacagcaactctaatgttgaagatggagacattgttatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

404

Amino Acids

46.32

Weight (kDa)

5.66

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	481
AatII	GACGTC	2 cut(s)	183, 250
AccII	CGCG	1 cut(s)	914
AciI	CCGC	2 cut(s)	55, 926
AclWI	GGATC	6 cut(s)	80, 443, 618, 624, 630, 876
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	5 cut(s)	529, 574, 747, 821, 879
AcyI	GRCGYC	3 cut(s)	180, 247, 1049
AdeI	CACNNNGTG	1 cut(s)	948
AfaI	GTAC	3 cut(s)	321, 739, 1092
AfiI	CCNNNNNNNGG	2 cut(s)	613, 663
AgsI	TTSAA	8 cut(s)	50, 74, 140, 527, 828, 971, 1142, 1192
AjnI	CCWGG	4 cut(s)	413, 606, 733, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	2 cut(s)	202, 305
AluI	AGCT	2 cut(s)	202, 305
Alw26I	GTCTC	3 cut(s)	467, 784, 1193
AlwI	GGATC	6 cut(s)	80, 443, 618, 624, 630, 876
AlwNI	CAGNNNCTG	1 cut(s)	1013
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	3 cut(s)	404, 654, 1009
ApoI	RAATTY	5 cut(s)	529, 574, 747, 821, 879
AspLEI	GCGC	1 cut(s)	914
AspS9I	GGNCC	3 cut(s)	604, 730, 1010
AsuHPI	GGTGA	1 cut(s)	1001
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	2 cut(s)	604, 730
BbsI	GAAGAC	1 cut(s)	959
BccI	CCATC	2 cut(s)	415, 1189
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	4 cut(s)	415, 608, 735, 1014
BcoDI	GTCTC	3 cut(s)	467, 784, 1193
Bme1390I	CCNGG	4 cut(s)	415, 608, 735, 1014
Bme18I	GGWCC	2 cut(s)	604, 730
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	604, 730, 1010
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	4 cut(s)	415, 608, 735, 1014
BpiI	GAAGAC	1 cut(s)	959
BpmI	CTGGAG	3 cut(s)	138, 830, 1035
BsaAI	YACGTR	1 cut(s)	1002
BsaBI	GATNNNNATC	2 cut(s)	615, 621
BsaHI	GRCGYC	3 cut(s)	180, 247, 1049
BsaJI	CCNNGG	5 cut(s)	414, 489, 733, 1012, 1086
BsaXI	ACNNNNNCTCC	1 cut(s)	1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 663
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	2 cut(s)	615, 621
BseBI	CCWGG	4 cut(s)	415, 608, 735, 1014
BseDI	CCNNGG	5 cut(s)	414, 489, 733, 1012, 1086
BseGI	GGATG	4 cut(s)	485, 604, 634, 807
BseJI	GATNNNNATC	2 cut(s)	615, 621
BseLI	CCNNNNNNNGG	2 cut(s)	613, 663
BseMII	CTCAG	4 cut(s)	24, 69, 714, 1131
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	1032
BseYI	CCCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	914
BshFI	GGCC	3 cut(s)	406, 656, 1011
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	2 cut(s)	613, 663
BsmAI	GTCTC	3 cut(s)	467, 784, 1193
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	3 cut(s)	406, 656, 1011
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
BspACI	CCGC	2 cut(s)	55, 926
BspANI	GGCC	3 cut(s)	406, 656, 1011
BspCNI	CTCAG	4 cut(s)	23, 70, 713, 1130
BspFNI	CGCG	1 cut(s)	914
BspLI	GGNNCC	1 cut(s)	732
BspPI	GGATC	6 cut(s)	80, 443, 618, 624, 630, 876
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	5 cut(s)	414, 489, 733, 1012, 1086
BssMI	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
BssNI	GRCGYC	3 cut(s)	180, 247, 1049
BssT1I	CCWWGG	1 cut(s)	1086
Bst2UI	CCWGG	4 cut(s)	415, 608, 735, 1014
Bst4CI	ACNGT	2 cut(s)	324, 389
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	3 cut(s)	180, 247, 1049
BstBAI	YACGTR	1 cut(s)	1002
BstDEI	CTNAG	4 cut(s)	10, 78, 700, 1117
BstF5I	GGATG	4 cut(s)	485, 604, 634, 807
BstFNI	CGCG	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	914
BstKTI	GATC	9 cut(s)	88, 190, 451, 613, 619, 625, 839, 871, 1123
BstMAI	GTCTC	3 cut(s)	467, 784, 1193
BstMBI	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	4 cut(s)	415, 608, 735, 1014
BstSCI	CCNGG	4 cut(s)	413, 606, 733, 1012
BstUI	CGCG	1 cut(s)	914
BstV2I	GAAGAC	1 cut(s)	959
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BsuRI	GGCC	3 cut(s)	406, 656, 1011
BtsCI	GGATG	4 cut(s)	485, 604, 634, 807
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	914
Cfr13I	GGNCC	3 cut(s)	604, 730, 1010
CseI	GACGC	1 cut(s)	1038
Csp6I	GTAC	3 cut(s)	320, 738, 1091
CviAII	CATG	3 cut(s)	798, 1053, 1082
CviQI	GTAC	3 cut(s)	320, 738, 1091
DdeI	CTNAG	4 cut(s)	10, 78, 700, 1117
DpnI	GATC	9 cut(s)	87, 189, 450, 612, 618, 624, 838, 870, 1122
DpnII	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
DraIII	CACNNNGTG	1 cut(s)	948
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	1086
Eco47I	GGWCC	2 cut(s)	604, 730
Eco88I	CYCGRG	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	730, 1010
EcoRII	CCWGG	4 cut(s)	413, 606, 733, 1012
EcoT14I	CCWWGG	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	3 cut(s)	801, 1056, 1085
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	3 cut(s)	797, 1052, 1081
FauNDI	CATATG	1 cut(s)	445
FokI	GGATG	4 cut(s)	472, 611, 641, 814
GlaI	GCGC	1 cut(s)	913
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	3 cut(s)	138, 830, 1035
HaeIII	GGCC	3 cut(s)	406, 656, 1011
HgaI	GACGC	1 cut(s)	1038
HhaI	GCGC	1 cut(s)	914
Hin1I	GRCGYC	3 cut(s)	180, 247, 1049
Hin1II	CATG	3 cut(s)	801, 1056, 1085
Hin6I	GCGC	1 cut(s)	912
HinP1I	GCGC	1 cut(s)	912
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HinfI	GANTC	5 cut(s)	475, 632, 792, 919, 1020
HphI	GGTGA	1 cut(s)	1001
Hpy166II	GTNNAC	6 cut(s)	65, 296, 395, 759, 942, 1005
Hpy188I	TCNGA	7 cut(s)	441, 637, 694, 703, 850, 1025, 1120
Hpy8I	GTNNAC	6 cut(s)	65, 296, 395, 759, 942, 1005
HpyAV	CCTTC	2 cut(s)	56, 228
HpyCH4III	ACNGT	2 cut(s)	324, 389
HpyCH4IV	ACGT	3 cut(s)	180, 247, 1001
HpyCH4V	TGCA	2 cut(s)	29, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	4 cut(s)	10, 78, 700, 1117
HpySE526I	ACGT	3 cut(s)	180, 247, 1001
Hsp92I	GRCGYC	3 cut(s)	180, 247, 1049
Hsp92II	CATG	3 cut(s)	801, 1056, 1085
HspAI	GCGC	1 cut(s)	912
Kzo9I	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
LmnI	GCTCC	2 cut(s)	302, 811
MaeII	ACGT	3 cut(s)	180, 247, 1001
MaeIII	GTNAC	2 cut(s)	176, 277
MalI	GATC	9 cut(s)	87, 189, 450, 612, 618, 624, 838, 870, 1122
MboI	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
MboII	GAAGA	4 cut(s)	356, 928, 959, 1204
MflI	RGATCY	1 cut(s)	868
MlyI	GAGTC	3 cut(s)	469, 786, 1029
MmeI	TCCRAC	5 cut(s)	152, 234, 313, 628, 663
MseI	TTAA	7 cut(s)	399, 425, 570, 818, 873, 1169, 1213
MslI	CAYNNNNRTG	2 cut(s)	273, 802
MspA1I	CMGCKG	1 cut(s)	926
MspR9I	CCNGG	4 cut(s)	415, 608, 735, 1014
MvaI	CCWGG	4 cut(s)	415, 608, 735, 1014
MvnI	CGCG	1 cut(s)	914
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
NlaIII	CATG	3 cut(s)	801, 1056, 1085
NlaIV	GGNNCC	1 cut(s)	732
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	632, 919
PleI	GAGTC	3 cut(s)	469, 786, 1028
PpsI	GAGTC	3 cut(s)	469, 786, 1028
Ppu21I	YACGTR	1 cut(s)	1002
PpuMI	RGGWCCY	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	730
Psp6I	CCWGG	4 cut(s)	413, 606, 733, 1012
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	4 cut(s)	413, 606, 733, 1012
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	3 cut(s)	604, 730, 1010
PspPPI	RGGWCCY	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	868
RsaI	GTAC	3 cut(s)	321, 739, 1092
RsaNI	GTAC	3 cut(s)	320, 738, 1091
RseI	CAYNNNNRTG	2 cut(s)	273, 802
SaqAI	TTAA	7 cut(s)	399, 425, 570, 818, 873, 1169, 1213
Sau3AI	GATC	9 cut(s)	85, 187, 448, 610, 616, 622, 836, 868, 1120
Sau96I	GGNCC	3 cut(s)	604, 730, 1010
SchI	GAGTC	3 cut(s)	469, 786, 1029
ScrFI	CCNGG	4 cut(s)	415, 608, 735, 1014
SinI	GGWCC	2 cut(s)	604, 730
SmiMI	CAYNNNNRTG	2 cut(s)	273, 802
SsiI	CCGC	2 cut(s)	55, 926
StyD4I	CCNGG	4 cut(s)	413, 606, 733, 1012
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	2 cut(s)	324, 389
TaiI	ACGT	3 cut(s)	183, 250, 1004
TaqI	TCGA	2 cut(s)	310, 1153
TfiI	GAWTC	2 cut(s)	632, 919
Tru1I	TTAA	7 cut(s)	399, 425, 570, 818, 873, 1169, 1213
Tru9I	TTAA	7 cut(s)	399, 425, 570, 818, 873, 1169, 1213
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	891
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	604, 730
XapI	RAATTY	5 cut(s)	529, 574, 747, 821, 879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
ZraI	GACGTC	2 cut(s)	181, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.