Rh7AG015300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001839
Physical Location & Seq
Forward (+)
1010710 .. 1011516
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG015300.1

Sequence Viewer

Length: 807 bp
ATGCCTTTTGAGGGTGGTAAATTTACTTGGAGGAAAGATAACATTAAGCAGAGACTTGATAGAGGATTGGTCTCAGCGAAATGGAAAACAATATTTTCTTCTCCTAGGGTATTGCATCTGAAGGATGGAGATATGTCAGATCACATTCCGATAGTGATACAAACTGATGGTCGAAAACAAAAAGTAGAAAATTCACGAACTCTGTATGATGCGATGGCTGATGTGTTTTTATTTGCTGAACAGTTGGAAGAGTTGTATCGTAATCCGAAAGTTAGGCTTATGACGGTCTCCAATATTGTAAACGAGATACAGCTGGAACGCTCGGATTTCTATTTCGAAATAGTAAAGACGATTGCGCCTGAAGTTATGCATGCAACGTATATTGCAGTACATGATAAGAAAACTGATACGGTTAAATATGAACGTCTGGTTAGTCTGAGGACTTGTTATAGCCTTGATCTCATATTATGGAATTGCATGGTCCTCCCCAAGTCAAGTCGAGATGACGACCTTGAAATTCTACCAGAATGTCCAAGTGCTTCTTGTAAAAGGATCGTCACAAAGGAGTTTAATCTTTCGGAGTATCTTGCGCAAACATGGAAACTAGTATGGTTGATTCCAATTGGCGGTAAAATAACCCGGAAAGAGATTATTGACCGAAAGATAGATGAGCAAGTGGAAAATTTGATTAAGTGGCTGAAAGACTTGTTTCCACAAGATGATGACAAGCATTTTCTGATCGGCATTCGACATCCGGAATACAGAGTTATGGTTAATAAATTAGAGCAGAATGCGATATTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

268

Amino Acids

31.48

Weight (kDa)

7.66

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 591
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 1 cut(s) 627
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 4 cut(s) 20, 190, 516, 682
AcuI CTGAAG 2 cut(s) 140, 381
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 11, 626
AgsI TTSAA 1 cut(s) 515
AhlI ACTAGT 1 cut(s) 604
AjuI GAANNNNNNNTTGG 1 cut(s) 782
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 3 cut(s) 46, 76, 292
AlwI GGATC 1 cut(s) 560
Aor13HI TCCGGA 1 cut(s) 754
ApoI RAATTY 4 cut(s) 20, 190, 516, 682
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspA2I CCTAGG 1 cut(s) 104
AspLEI GCGC 2 cut(s) 358, 592
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 640
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 1 cut(s) 481
AvrII CCTAGG 1 cut(s) 104
BccI CCATC 3 cut(s) 119, 161, 208
BcnI CCSGG 1 cut(s) 640
BcoDI GTCTC 3 cut(s) 46, 76, 292
BcuI ACTAGT 1 cut(s) 604
BfaI CTAG 2 cut(s) 105, 605
BlnI CCTAGG 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 640
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 124, 199
Bpu14I TTCGAA 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 640
BsaI GGTCTC 2 cut(s) 76, 292
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 626
BseAI TCCGGA 1 cut(s) 754
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 130, 751
BseLI CCNNNNNNNGG 2 cut(s) 11, 626
BseMII CTCAG 2 cut(s) 87, 428
BsiSI CCGG 2 cut(s) 640, 755
BslI CCNNNNNNNGG 2 cut(s) 11, 626
BsmAI GTCTC 3 cut(s) 46, 76, 292
BsmI GAATGC 2 cut(s) 744, 796
Bso31I GGTCTC 2 cut(s) 76, 292
Bsp119I TTCGAA 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 754
Bsp143I GATC 4 cut(s) 139, 457, 552, 738
BspACI CCGC 1 cut(s) 627
BspCNI CTCAG 2 cut(s) 86, 429
BspEI TCCGGA 1 cut(s) 754
BspPI GGATC 1 cut(s) 560
BspT104I TTCGAA 1 cut(s) 336
BspTNI GGTCTC 2 cut(s) 76, 292
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 4 cut(s) 139, 457, 552, 738
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 243, 286, 412
Bst6I CTCTTC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 73, 437
BstF5I GGATG 2 cut(s) 130, 751
BstHHI GCGC 2 cut(s) 358, 592
BstKTI GATC 4 cut(s) 142, 460, 555, 741
BstMAI GTCTC 3 cut(s) 46, 76, 292
BstMBI GATC 4 cut(s) 139, 457, 552, 738
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 2 cut(s) 130, 751
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 2 cut(s) 358, 592
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 389
CviAII CATG 4 cut(s) 371, 392, 478, 597
CviJI RGCY 5 cut(s) 218, 277, 313, 453, 697
CviKI_1 RGCY 5 cut(s) 218, 277, 313, 453, 697
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 73, 437
DpnI GATC 4 cut(s) 141, 459, 554, 740
DpnII GATC 4 cut(s) 139, 457, 552, 738
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 104
Eco31I GGTCTC 2 cut(s) 76, 292
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 140, 381
EcoT14I CCWWGG 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 4 cut(s) 374, 395, 481, 600
FalI AAGNNNNNCTT 4 cut(s) 261, 293, 526, 558
FatI CATG 4 cut(s) 370, 391, 477, 596
FokI GGATG 2 cut(s) 137, 738
FspBI CTAG 2 cut(s) 105, 605
FspI TGCGCA 1 cut(s) 591
GlaI GCGC 2 cut(s) 357, 591
HapII CCGG 2 cut(s) 640, 755
HhaI GCGC 2 cut(s) 358, 592
Hin1II CATG 4 cut(s) 374, 395, 481, 600
Hin6I GCGC 2 cut(s) 356, 590
HinP1I GCGC 2 cut(s) 356, 590
HinfI GANTC 1 cut(s) 616
HpaII CCGG 2 cut(s) 640, 755
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 8 cut(s) 120, 139, 150, 267, 325, 438, 580, 738
Hpy188III TCNNGA 3 cut(s) 195, 500, 755
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 243, 286, 412
HpyCH4IV ACGT 2 cut(s) 377, 424
HpyCH4V TGCA 5 cut(s) 115, 370, 374, 386, 477
HpyF3I CTNAG 2 cut(s) 73, 437
HpySE526I ACGT 2 cut(s) 377, 424
Hsp92II CATG 4 cut(s) 374, 395, 481, 600
HspAI GCGC 2 cut(s) 356, 590
Kpn2I TCCGGA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 139, 457, 552, 738
LpnPI CCDG 6 cut(s) 299, 372, 413, 537, 653, 768
LweI GCATC 2 cut(s) 124, 199
MaeI CTAG 2 cut(s) 105, 605
MaeII ACGT 2 cut(s) 377, 424
MaeIII GTNAC 1 cut(s) 556
MalI GATC 4 cut(s) 141, 459, 554, 740
MboI GATC 4 cut(s) 139, 457, 552, 738
MboII GAAGA 2 cut(s) 90, 260
MfeI CAATTG 1 cut(s) 621
MluCI AATT 7 cut(s) 20, 190, 472, 516, 621, 682, 779
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 5 cut(s) 4, 24, 56, 432, 494
Mph1103I ATGCAT 1 cut(s) 372
MroI TCCGGA 1 cut(s) 754
MseI TTAA 5 cut(s) 45, 414, 570, 690, 774
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 2 cut(s) 640, 755
MspR9I CCNGG 1 cut(s) 640
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 2 cut(s) 744, 796
NciI CCSGG 1 cut(s) 640
NdeII GATC 4 cut(s) 139, 457, 552, 738
NlaIII CATG 4 cut(s) 374, 395, 481, 600
NmuCI GTSAC 1 cut(s) 556
NsbI TGCGCA 1 cut(s) 591
NsiI ATGCAT 1 cut(s) 372
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 336
PaeI GCATGC 1 cut(s) 374
PctI GAATGC 2 cut(s) 744, 796
PfeI GAWTC 1 cut(s) 616
PspPI GGNCC 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SaqAI TTAA 5 cut(s) 45, 414, 570, 690, 774
Sau3AI GATC 4 cut(s) 139, 457, 552, 738
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 640
SetI ASST 4 cut(s) 315, 380, 427, 513
SfaNI GCATC 2 cut(s) 124, 199
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 1 cut(s) 481
SpeI ACTAGT 1 cut(s) 604
SphI GCATGC 1 cut(s) 374
Sse9I AATT 7 cut(s) 20, 190, 472, 516, 621, 682, 779
SsiI CCGC 1 cut(s) 627
SspI AATATT 2 cut(s) 93, 295
SspMI CTAG 2 cut(s) 105, 605
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 243, 286, 412
TaiI ACGT 2 cut(s) 380, 427
TaqI TCGA 4 cut(s) 172, 336, 499, 748
TaqII GACCGA 1 cut(s) 672
TasI AATT 7 cut(s) 20, 190, 472, 516, 621, 682, 779
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 5 cut(s) 45, 414, 570, 690, 774
Tru9I TTAA 5 cut(s) 45, 414, 570, 690, 774
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 4 cut(s) 20, 190, 516, 682
XceI RCATGY 1 cut(s) 374
XmaJI CCTAGG 1 cut(s) 104
XspI CTAG 2 cut(s) 105, 605
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.