Rroxscaffold_155G00443920

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000155
Physical Location & Seq
Forward (+)
81983 .. 89932
7950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_155G00443920.1

Sequence Viewer

Length: 189 bp
ATGGAGTTGTTGGAACATTGTAGGGCAATCGGATGCAGTATGAAACCAGGCCAAGAGCAGAATATCCTCCATCTGATGATTTCTTTCTTCAGCAGCAATGGTACATTTTTTACGCGATTCTCATCTGATGAAGCTGACAGGGCAGTCTGCATCGAAGTTTTCATGAAAAAGGTTGATTGGTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.15

Weight (kDa)

5.22

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccII CGCG 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 48
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 23, 159
BsaBI GATNNNNATC 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 121
BseBI CCWGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 121
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 38
CciI TCATGA 1 cut(s) 162
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 163
CviJI RGCY 2 cut(s) 51, 134
CviKI_1 RGCY 2 cut(s) 51, 134
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 183
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 41, 164
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 1 cut(s) 166
HinfI GANTC 1 cut(s) 117
Hpy188I TCNGA 4 cut(s) 32, 75, 127, 184
Hpy188III TCNNGA 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 36, 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 166
LpnPI CCDG 3 cut(s) 33, 60, 124
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 2 cut(s) 23, 159
MboII GAAGA 1 cut(s) 79
MnlI CCTC 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 166
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SatI GCNGC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 48
SetI ASST 2 cut(s) 136, 174
SfaNI GCATC 2 cut(s) 23, 159
SgeI CNNG 6 cut(s) 59, 60, 65, 126, 151, 175
StyD4I CCNGG 1 cut(s) 46
TaqI TCGA 1 cut(s) 153
TfiI GAWTC 1 cut(s) 117
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 4 cut(s) 56, 144, 151, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.