Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

1787593 .. 1792517

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG024900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGCGAAGATACTTGTATCCGGGGGAGTCCGAACACCTGTTTTTCTATCTCGAACAGCTCGGGGTGAGGATCCATCTTAACGTTTCTGATCAGGAAAAAGCTATCGTTGCTACCGAATCCTTCATCAAAAAAATGAGCGGTTGGCGTCAACCTATGATGATCGATTCCATCGCCCTGGCTACGAGGGAACTCCTTAAACCTAAGGAGATAAACGAGGAGATTATTGACAAAGTTATTGAGTTCTACCCAAACGTCCCGGGGGCAGCGGAGAAGGAAGAGGAGGATGAAGACGAGAAGTTGACGGCGCTGTTAGGGTCGGAGGCCGAGGATGAGGAGGAGGTTGAGGATCCCGAGTGTGATGATTTATATTTTCAAGACAAGAAGAAGAGGGCCATGGAGAAGGCAAAGGTTGCGGAACCGACAGAAGAAGACATGATGGAGTTGTTGAAATATTGCAGTGAAATGGGATGCAGTTTGAAACAATGCCAAGACCAGAACATCCTCAATCGGATGATTTCTTTCATAAGCAATTCTGATTGTTTTACACGATTCTCATCTGATGAATATGATAGGAGCGTCTGCATCAAAATTTTCATGGAAAAGGTCGACGCCTATCTCTTGAGTTGTTGCACCCTGAACGACTTTGGGACGGTGAACTGCGCCATTCAGACGGTACTGGAGTCAATGGACAAAAAAGAACAAGAAGATTTGCAAGTTTTTGAGGGATTGACTCGTTGTTTTTGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.92

Weight (kDa)

4.45

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	3 cut(s)	141, 269, 416
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	4 cut(s)	67, 80, 344, 357
AcsI	RAATTY	1 cut(s)	591
AcyI	GRCGYC	2 cut(s)	148, 612
AfaI	GTAC	1 cut(s)	678
AgsI	TTSAA	3 cut(s)	377, 451, 481
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	61, 104
AluI	AGCT	2 cut(s)	61, 104
AlwI	GGATC	4 cut(s)	67, 80, 344, 357
Ama87I	CYCGRG	3 cut(s)	62, 259, 353
AoxI	GGCC	2 cut(s)	324, 393
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	591
AspLEI	GCGC	2 cut(s)	310, 665
AspS9I	GGNCC	1 cut(s)	393
AsuC2I	CCSGG	3 cut(s)	24, 260, 261
AsuHPI	GGTGA	2 cut(s)	79, 667
AvaI	CYCGRG	3 cut(s)	62, 259, 353
AxyI	CCTNAGG	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	668, 701
BamHI	GGATCC	2 cut(s)	72, 349
BbsI	GAAGAC	2 cut(s)	297, 438
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	84, 179, 433
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	3 cut(s)	24, 260, 261
BfoI	RGCGCY	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	4 cut(s)	24, 179, 260, 261
BmeT110I	CYCGRG	3 cut(s)	62, 259, 353
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	3 cut(s)	74, 351, 420
BmrFI	CCNGG	4 cut(s)	24, 179, 260, 261
BmsI	GCATC	2 cut(s)	461, 594
BpiI	GAAGAC	2 cut(s)	297, 438
BpmI	CTGGAG	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	643
BpuMI	CCSGG	3 cut(s)	24, 260, 261
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	556
BsaHI	GRCGYC	2 cut(s)	148, 612
BsaJI	CCNNGG	6 cut(s)	23, 177, 259, 260, 327, 396
Bse1I	ACTGG	1 cut(s)	684
Bse21I	CCTNAGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	6 cut(s)	23, 177, 259, 260, 327, 396
BseGI	GGATG	5 cut(s)	292, 337, 476, 501, 519
BseJI	GATNNNNATC	1 cut(s)	556
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	4 cut(s)	233, 296, 350, 353
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	326, 395
BshVI	ATCGAT	1 cut(s)	165
BsiHKCI	CYCGRG	3 cut(s)	62, 259, 353
BsiSI	CCGG	2 cut(s)	23, 260
BslFI	GGGAC	2 cut(s)	242, 664
BsmFI	GGGAC	2 cut(s)	242, 664
BsnI	GGCC	2 cut(s)	326, 395
BsoBI	CYCGRG	3 cut(s)	62, 259, 353
Bsp143I	GATC	4 cut(s)	72, 91, 162, 349
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	3 cut(s)	141, 269, 416
BspANI	GGCC	2 cut(s)	326, 395
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	74, 351, 420
BspPI	GGATC	4 cut(s)	67, 80, 344, 357
BsrBI	CCGCTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	6 cut(s)	23, 177, 259, 260, 327, 396
BssMI	GATC	4 cut(s)	72, 91, 162, 349
BssNI	GRCGYC	2 cut(s)	148, 612
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	655, 676
Bst6I	CTCTTC	2 cut(s)	273, 383
BstACI	GRCGYC	2 cut(s)	148, 612
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	5 cut(s)	292, 337, 476, 501, 519
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 665
BstKTI	GATC	4 cut(s)	75, 94, 165, 352
BstMBI	GATC	4 cut(s)	72, 91, 162, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 413
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	22, 177, 258, 259
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	2 cut(s)	297, 438
BstX2I	RGATCY	2 cut(s)	72, 349
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	2 cut(s)	72, 349
Bsu15I	ATCGAT	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	326, 395
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	5 cut(s)	292, 337, 476, 501, 519
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	466
CfoI	GCGC	2 cut(s)	310, 665
Cfr13I	GGNCC	1 cut(s)	393
Cfr9I	CCCGGG	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	3 cut(s)	137, 568, 620
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	3 cut(s)	397, 436, 598
CviJI	RGCY	5 cut(s)	61, 104, 182, 326, 395
CviKI_1	RGCY	5 cut(s)	61, 104, 182, 326, 395
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	74, 93, 164, 351
DpnII	GATC	4 cut(s)	72, 91, 162, 349
Eam1104I	CTCTTC	2 cut(s)	273, 383
EarI	CTCTTC	2 cut(s)	273, 383
Eco130I	CCWWGG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	3 cut(s)	62, 259, 353
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	3 cut(s)	400, 439, 601
FaiI	YATR	7 cut(s)	158, 370, 398, 437, 527, 570, 599
FaqI	GGGAC	2 cut(s)	242, 664
FatI	CATG	3 cut(s)	396, 435, 597
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	5 cut(s)	299, 344, 483, 488, 526
Fsp4HI	GCNGC	1 cut(s)	267
GlaI	GCGC	2 cut(s)	309, 664
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	326, 395
HapII	CCGG	2 cut(s)	23, 260
HgaI	GACGC	3 cut(s)	137, 568, 620
HhaI	GCGC	2 cut(s)	310, 665
Hin1I	GRCGYC	2 cut(s)	148, 612
Hin1II	CATG	3 cut(s)	400, 439, 601
Hin6I	GCGC	2 cut(s)	308, 663
HinP1I	GCGC	2 cut(s)	308, 663
HincII	GTYRAC	3 cut(s)	152, 303, 610
HindII	GTYRAC	3 cut(s)	152, 303, 610
HinfI	GANTC	6 cut(s)	29, 119, 167, 552, 683, 733
HpaII	CCGG	2 cut(s)	23, 260
HphI	GGTGA	2 cut(s)	79, 667
Hpy166II	GTNNAC	4 cut(s)	152, 303, 610, 658
Hpy188I	TCNGA	7 cut(s)	34, 91, 322, 513, 538, 562, 672
Hpy188III	TCNNGA	5 cut(s)	53, 95, 353, 377, 622
Hpy8I	GTNNAC	4 cut(s)	152, 303, 610, 658
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	3 cut(s)	133, 268, 397
HpyCH4III	ACNGT	2 cut(s)	655, 676
HpyCH4IV	ACGT	2 cut(s)	84, 255
HpyCH4V	TGCA	5 cut(s)	459, 474, 585, 633, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 413
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	84, 255
Hsp92I	GRCGYC	2 cut(s)	148, 612
Hsp92II	CATG	3 cut(s)	400, 439, 601
HspAI	GCGC	2 cut(s)	308, 663
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	72, 91, 162, 349
LmnI	GCTCC	1 cut(s)	576
LpnPI	CCDG	9 cut(s)	36, 53, 80, 164, 191, 273, 509, 650, 665
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	461, 594
MaeII	ACGT	2 cut(s)	84, 255
MalI	GATC	4 cut(s)	74, 93, 164, 351
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	4 cut(s)	72, 91, 162, 349
MboII	GAAGA	8 cut(s)	21, 290, 302, 397, 400, 440, 443, 719
MflI	RGATCY	2 cut(s)	72, 349
MluCI	AATT	2 cut(s)	532, 591
MlyI	GAGTC	3 cut(s)	38, 692, 727
MmeI	TCCRAC	1 cut(s)	300
MseI	TTAA	2 cut(s)	81, 198
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	23, 260
MspR9I	CCNGG	4 cut(s)	24, 179, 260, 261
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	110, 413
NciI	CCSGG	3 cut(s)	24, 260, 261
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	72, 91, 162, 349
NlaIII	CATG	3 cut(s)	400, 439, 601
NlaIV	GGNNCC	3 cut(s)	74, 351, 420
NmeAIII	GCCGAG	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	119, 167, 552
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	3 cut(s)	37, 691, 727
PpsI	GAGTC	3 cut(s)	37, 691, 727
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	74, 351, 420
PspPI	GGNCC	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	72, 349
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SalI	GTCGAC	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	81, 198
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	72, 91, 162, 349
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	3 cut(s)	38, 692, 727
ScrFI	CCNGG	4 cut(s)	24, 179, 260, 261
SfaNI	GCATC	2 cut(s)	461, 594
SmaI	CCCGGG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	2 cut(s)	532, 591
SsiI	CCGC	3 cut(s)	141, 269, 416
SspI	AATATT	1 cut(s)	455
StyD4I	CCNGG	4 cut(s)	22, 177, 258, 259
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	655, 676
TaiI	ACGT	2 cut(s)	87, 258
TaqI	TCGA	3 cut(s)	54, 165, 609
TasI	AATT	2 cut(s)	532, 591
TfiI	GAWTC	3 cut(s)	119, 167, 552
Tru1I	TTAA	2 cut(s)	81, 198
Tru9I	TTAA	2 cut(s)	81, 198
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	5 cut(s)	115, 303, 514, 579, 586
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	591
XmaI	CCCGGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.