Rorug06G0425800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001839
Physical Location & Seq
Forward (+)
56296979 .. 56299120
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0425800.1

Sequence Viewer

Length: 507 bp
ATGTCGTATAGAGCTTCTCATGTCGCTCAGGCCGAGAAGCTCTACAATGGGAAAGATGTATTTCCTACATTTGTAAATCTCAAGCATTTGGAACTAGGATTCAAAGAAGTTGACGATTGCTGTCTACTTCAATTGGCTTCTTCAATGAGGGCATCTCCTTTTTTGCACAAACTTGTGTTGAAGTTGGCAAAGGTAATCTCTATATATTATAGCAGAGAAATGCAGATTAAGCAAGCTCCCAAATGCTTCCATGAATACCTTAGGGTAGTGGAAGTGGCAGAGTATCATGGTCGTACAAGTGATTTTGAACTTGTCATGTATTTGATAGAGAATGCTGTTGAACTAGAAAAACTTGTTATCCATCCTGTCGGCACATGGTATTCTTATGACCGGAGGATGCAGTATGATGGAAATGCGGAGAGGGAAGAAAAGGCGGAAAGAAAACAAGCTACTCAGCAGCTTAAAGAACAAATGCCTTCGACTCTAGATTTCATATGCCGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.72

Weight (kDa)

7.01

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 22 - 132 7.3e-11 At1g61320/AtMIF1, LRR domain
FBD PF08387 79 - 120 7.6e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 124
AciI CCGC 2 cut(s) 416, 434
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 6 cut(s) 103, 131, 144, 181, 308, 341
AluBI AGCT 5 cut(s) 14, 40, 236, 449, 460
AluI AGCT 5 cut(s) 14, 40, 236, 449, 460
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 457
AxyI CCTNAGG 1 cut(s) 260
BbvI GCAGC 1 cut(s) 469
BccI CCATC 2 cut(s) 369, 401
BfaI CTAG 3 cut(s) 95, 344, 485
BfmI CTRYAG 1 cut(s) 503
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
BmsI GCATC 2 cut(s) 161, 387
BplI GAGNNNNNCTC 2 cut(s) 139, 171
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 498
Bse21I CCTNAGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 361, 402
BseMII CTCAG 2 cut(s) 41, 467
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 391, 499
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 32
BspACI CCGC 2 cut(s) 416, 434
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 40, 466
BsrFI RCCGGY 1 cut(s) 498
BssAI RCCGGY 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 234, 500
BstDEI CTNAG 3 cut(s) 27, 260, 453
BstF5I GGATG 2 cut(s) 361, 402
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 469
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 2 cut(s) 361, 402
Cac8I GCNNGC 2 cut(s) 234, 500
Cfr10I RCCGGY 1 cut(s) 498
Csp6I GTAC 1 cut(s) 294
CviAII CATG 5 cut(s) 20, 251, 287, 316, 375
CviJI RGCY 8 cut(s) 14, 32, 40, 137, 236, 449, 460, 502
CviKI_1 RGCY 8 cut(s) 14, 32, 40, 137, 236, 449, 460, 502
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 3 cut(s) 27, 260, 453
EciI GGCGGA 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 260
FaeI CATG 5 cut(s) 23, 254, 290, 319, 378
FatI CATG 5 cut(s) 19, 250, 286, 315, 374
FauNDI CATATG 1 cut(s) 494
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 458
FokI GGATG 2 cut(s) 348, 409
Fsp4HI GCNGC 1 cut(s) 458
FspBI CTAG 3 cut(s) 95, 344, 485
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 32
HapII CCGG 2 cut(s) 391, 499
Hin1II CATG 5 cut(s) 23, 254, 290, 319, 378
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 99, 481
HpaII CCGG 2 cut(s) 391, 499
Hpy166II GTNNAC 2 cut(s) 112, 125
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 2 cut(s) 112, 125
HpyAV CCTTC 1 cut(s) 486
HpyCH4V TGCA 3 cut(s) 166, 223, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 3 cut(s) 27, 260, 453
Hsp92II CATG 5 cut(s) 23, 254, 290, 319, 378
KroI GCCGGC 1 cut(s) 498
KroNI GCCGGC 1 cut(s) 500
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 14, 378, 404
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 2 cut(s) 161, 387
MaeI CTAG 3 cut(s) 95, 344, 485
MboII GAAGA 2 cut(s) 132, 437
MfeI CAATTG 1 cut(s) 131
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 3 cut(s) 141, 387, 414
MroNI GCCGGC 1 cut(s) 498
MseI TTAA 2 cut(s) 228, 462
MspI CCGG 2 cut(s) 391, 499
MunI CAATTG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 229
NaeI GCCGGC 1 cut(s) 500
NdeI CATATG 1 cut(s) 494
NgoMIV GCCGGC 1 cut(s) 498
NlaIII CATG 5 cut(s) 23, 254, 290, 319, 378
NmeAIII GCCGAG 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 459
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 2 cut(s) 228, 462
SatI GCNGC 1 cut(s) 458
SchI GAGTC 1 cut(s) 475
SetI ASST 7 cut(s) 16, 42, 195, 238, 261, 451, 462
SfaNI GCATC 2 cut(s) 161, 387
SfcI CTRYAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 131
SsiI CCGC 2 cut(s) 416, 434
SspMI CTAG 3 cut(s) 95, 344, 485
TaqI TCGA 1 cut(s) 479
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 228, 462
Tru9I TTAA 2 cut(s) 228, 462
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 267, 481
XbaI TCTAGA 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 124
XspI CTAG 3 cut(s) 95, 344, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.