Rh7AG025500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001839
Physical Location & Seq
Reverse (-)
1697200 .. 1706366
9167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG025500.1

Sequence Viewer

Length: 825 bp
ATGAGGAAAATATACAACTTGCCTCCACCGGAGGCCAAACACCTGTTTACCTATCTCCAACGGCTCGGGGTGAGGACCAATCTTGACGCTTATTCTCAGGAAAAGGCTATCGATGCTACCGACTCCTTCTTCAAACAAGTCAGTGATTGGCGTCAACCTACGATAATCGGTTCGATCGCCTTTACTATTCTGACGGAACTCCGTAAATCTAAGGAGATAAACGAGGAGATTATTAGAAAAGTTGTTCAGTTCTACCCAAAAGTCCCGGGTGTGGAGGAGGAGGAGGAGGAGGATGAAATCGATAAGTTGGCGGCGGCTTTAGGGTCGGAGGCCGAGGAGGAGACGGAGCCGGAGCCGGAGGTTGAGGATCTTCCTGATCCCGATGATTTTGATTTTGATTTAGTAGGAGACTGCATGGATAGGGCAAAGGAGGCAGAAGCGACAGAACAAGACAGGAAAGAGTTGTTGAAACAGTGCAGTGAAATGGGGTGCCGATTGAAACAAGGCGACGAACAGAAGATCCTCGATCTGATGATTCCTTTCTTGAGCAGCAATTTTACACGATTCTCATCTGATATAACTGATCGGACAATCTGCATCGAAGCATTCATGGAACATGTCCAAGATTATATCAATCGTTCTTGCATCCTGAACGACTTGGGGACGGTGAACCGCGCCATTCAGACTGTGAATAAGTTAATGCAAGTAGAAGAAGATTGGAAAAAGGAGCAGCATCAGAGTGTTAGCAGAATGTTAAAGAAGGATATCGTATTAACTAAAGAAGAAGGAATTGCTACGCCCATATACCTCTTAAAACAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.67

Weight (kDa)

4.6

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 489
AccII CGCG 1 cut(s) 675
AciI CCGC 3 cut(s) 311, 314, 673
AclWI GGATC 3 cut(s) 371, 375, 514
AcyI GRCGYC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 3 cut(s) 133, 469, 499
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
Alw26I GTCTC 2 cut(s) 335, 402
AlwI GGATC 3 cut(s) 371, 375, 514
Ama87I CYCGRG 2 cut(s) 65, 265
AoxI GGCC 2 cut(s) 33, 330
ApeKI GCWGC 2 cut(s) 549, 730
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 2 cut(s) 266, 267
AsuHPI GGTGA 2 cut(s) 82, 679
AvaI CYCGRG 2 cut(s) 65, 265
AvaII GGWCC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 561, 742
BceAI ACGGC 1 cut(s) 77
BcnI CCSGG 2 cut(s) 266, 267
BcoDI GTCTC 2 cut(s) 335, 402
BisI GCNGC 4 cut(s) 312, 315, 550, 731
BlsI GCNGC 4 cut(s) 313, 316, 551, 732
Bme1390I CCNGG 2 cut(s) 266, 267
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 2 cut(s) 65, 265
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 3 cut(s) 348, 354, 491
BmrFI CCNGG 2 cut(s) 266, 267
BmsI GCATC 4 cut(s) 103, 606, 654, 742
BpuEI CTTGAG 1 cut(s) 565
BpuMI CCSGG 2 cut(s) 266, 267
Bsa29I ATCGAT 2 cut(s) 111, 300
BsaBI GATNNNNATC 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 265, 333
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 568
BseCI ATCGAT 2 cut(s) 111, 300
BseDI CCNNGG 2 cut(s) 265, 333
BseGI GGATG 2 cut(s) 298, 645
BseJI GATNNNNATC 1 cut(s) 568
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 8 cut(s) 239, 290, 293, 296, 299, 302, 350, 353
BseXI GCAGC 2 cut(s) 561, 742
BsgI GTGCAG 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 675
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 35, 332
BshNI GGYRCC 1 cut(s) 489
BshVI ATCGAT 2 cut(s) 111, 300
BsiEI CGRYCG 1 cut(s) 177
BsiHKCI CYCGRG 2 cut(s) 65, 265
BsiSI CCGG 4 cut(s) 29, 266, 350, 356
BslFI GGGAC 2 cut(s) 248, 676
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 335, 402
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 248, 676
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 2 cut(s) 35, 332
BsoBI CYCGRG 2 cut(s) 65, 265
Bsp143I GATC 6 cut(s) 174, 367, 376, 519, 526, 583
BspACI CCGC 3 cut(s) 311, 314, 673
BspANI GGCC 2 cut(s) 35, 332
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 2 cut(s) 111, 300
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 3 cut(s) 348, 354, 491
BspPI GGATC 3 cut(s) 371, 375, 514
BspT107I GGYRCC 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 265, 333
BssMI GATC 6 cut(s) 174, 367, 376, 519, 526, 583
BssNI GRCGYC 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 474, 667, 688
BstACI GRCGYC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 96, 210
BstF5I GGATG 2 cut(s) 298, 645
BstFNI CGCG 1 cut(s) 675
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 6 cut(s) 177, 370, 379, 522, 529, 586
BstMAI GTCTC 2 cut(s) 335, 402
BstMBI GATC 6 cut(s) 174, 367, 376, 519, 526, 583
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 113, 431
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 264, 265
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 561, 742
BstX2I RGATCY 2 cut(s) 367, 519
BstYI RGATCY 2 cut(s) 367, 519
Bsu15I ATCGAT 2 cut(s) 111, 300
BsuRI GGCC 2 cut(s) 35, 332
BsuTUI ATCGAT 2 cut(s) 111, 300
BtsCI GGATG 2 cut(s) 298, 645
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 3 cut(s) 148, 479, 484
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 75
Cfr9I CCCGGG 1 cut(s) 265
ClaI ATCGAT 2 cut(s) 111, 300
CseI GACGC 2 cut(s) 95, 140
CviAII CATG 3 cut(s) 415, 610, 617
CviJI RGCY 7 cut(s) 35, 64, 107, 317, 332, 349, 355
CviKI_1 RGCY 7 cut(s) 35, 64, 107, 317, 332, 349, 355
DdeI CTNAG 2 cut(s) 96, 210
DpnI GATC 6 cut(s) 176, 369, 378, 521, 528, 585
DpnII GATC 6 cut(s) 174, 367, 376, 519, 526, 583
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 75
Eco88I CYCGRG 2 cut(s) 65, 265
EcoRV GATATC 1 cut(s) 766
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 3 cut(s) 418, 613, 620
FaiI YATR 8 cut(s) 13, 416, 578, 611, 618, 630, 803, 805
FaqI GGGAC 2 cut(s) 248, 676
FatI CATG 3 cut(s) 414, 609, 616
Fnu4HI GCNGC 4 cut(s) 312, 315, 550, 731
FokI GGATG 2 cut(s) 305, 632
Fsp4HI GCNGC 4 cut(s) 312, 315, 550, 731
GlaI GCGC 1 cut(s) 676
GluI GCNGC 4 cut(s) 312, 315, 550, 731
HaeIII GGCC 2 cut(s) 35, 332
HapII CCGG 4 cut(s) 29, 266, 350, 356
HgaI GACGC 2 cut(s) 95, 140
HhaI GCGC 1 cut(s) 677
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 3 cut(s) 418, 613, 620
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 3 cut(s) 122, 535, 564
HpaII CCGG 4 cut(s) 29, 266, 350, 356
HphI GGTGA 2 cut(s) 82, 679
Hpy166II GTNNAC 3 cut(s) 48, 155, 670
Hpy188I TCNGA 7 cut(s) 192, 328, 531, 574, 588, 684, 738
Hpy188III TCNNGA 6 cut(s) 83, 98, 374, 380, 544, 649
Hpy8I GTNNAC 3 cut(s) 48, 155, 670
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 3 cut(s) 136, 754, 779
HpyCH4III ACNGT 3 cut(s) 474, 667, 688
HpyCH4V TGCA 5 cut(s) 414, 477, 597, 645, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 431
HpyF3I CTNAG 2 cut(s) 96, 210
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 3 cut(s) 418, 613, 620
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 6 cut(s) 174, 367, 376, 519, 526, 583
LmnI GCTCC 3 cut(s) 346, 352, 727
LpnPI CCDG 9 cut(s) 42, 56, 83, 279, 363, 369, 387, 439, 662
Lsp1109I GCAGC 2 cut(s) 561, 742
LweI GCATC 4 cut(s) 103, 606, 654, 742
MalI GATC 6 cut(s) 176, 369, 378, 521, 528, 585
MboI GATC 6 cut(s) 174, 367, 376, 519, 526, 583
MboII GAAGA 6 cut(s) 121, 362, 529, 722, 725, 794
MflI RGATCY 2 cut(s) 367, 519
MluCI AATT 2 cut(s) 553, 789
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 82, 306
MseI TTAA 4 cut(s) 698, 755, 773, 812
MslI CAYNNNNRTG 1 cut(s) 738
MspI CCGG 4 cut(s) 29, 266, 350, 356
MspR9I CCNGG 2 cut(s) 266, 267
Mva1269I GAATGC 1 cut(s) 605
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 2 cut(s) 113, 431
NciI CCSGG 2 cut(s) 266, 267
NdeII GATC 6 cut(s) 174, 367, 376, 519, 526, 583
NlaIII CATG 3 cut(s) 418, 613, 620
NlaIV GGNNCC 3 cut(s) 348, 354, 491
NmeAIII GCCGAG 1 cut(s) 358
NspI RCATGY 1 cut(s) 620
PciI ACATGT 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 535, 564
PkrI GCNGC 4 cut(s) 313, 316, 551, 732
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 616
PspN4I GGNNCC 3 cut(s) 348, 354, 491
PspPI GGNCC 1 cut(s) 75
PsuI RGATCY 2 cut(s) 367, 519
PvuI CGATCG 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 738
SaqAI TTAA 4 cut(s) 698, 755, 773, 812
SatI GCNGC 4 cut(s) 312, 315, 550, 731
Sau3AI GATC 6 cut(s) 174, 367, 376, 519, 526, 583
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 266, 267
SetI ASST 5 cut(s) 45, 53, 160, 363, 810
SfaNI GCATC 4 cut(s) 103, 606, 654, 742
SinI GGWCC 1 cut(s) 75
SmaI CCCGGG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 2 cut(s) 553, 789
SsiI CCGC 3 cut(s) 311, 314, 673
StyD4I CCNGG 2 cut(s) 264, 265
TaaI ACNGT 3 cut(s) 474, 667, 688
TaqI TCGA 5 cut(s) 111, 173, 300, 525, 600
TasI AATT 2 cut(s) 553, 789
TauI GCSGC 2 cut(s) 314, 317
TfiI GAWTC 2 cut(s) 535, 564
Tru1I TTAA 4 cut(s) 698, 755, 773, 812
Tru9I TTAA 4 cut(s) 698, 755, 773, 812
TscAI CASTG 3 cut(s) 148, 479, 484
TseI GCWGC 2 cut(s) 549, 730
TspDTI ATGAA 2 cut(s) 309, 598
TspGWI ACGGA 3 cut(s) 191, 209, 359
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 3 cut(s) 148, 479, 484
VpaK11BI GGWCC 1 cut(s) 75
XceI RCATGY 1 cut(s) 620
XmaI CCCGGG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.