Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

1150216 .. 1151643

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGCCTTTTGAGGGTGGTAAATTTACATGGAAGAATGATAACATTAAGCAGAGGCTTGATAGAGGATTGGTCTCATTGAAATGGAAAAAAATATTTCATTCTCCTAGAGTATTGCATCTGAATGATGGAGATATATCAGATCACATTCCTATAGTGATACAAACCGATGGTCAAAAACAAAAAATAGAGAATGGGGAAACTCTACGTCATGCGATGGCTGATGTGTTTTTATTTGCTAAACAGTTGGAAGAGCTGTATCGTAATCCGAAAGTTAGGCTTATGACGGTCTCTAATATTGTAAATGAGATACAACTGGAACGCTCGGATTTCTATTTCGAAATAGTAAAGATGATTGCGCCTAAAGTTTTTCATGCAATGTATATTGCAGTTCACGATAAGAAAACTGATACAGTTAAATATGAACGTCTAGTTACTCTAAGAACTTGTTATTGCCTTGATCTCATATTATGGAATTGCATGGTCCTCCCCAAGCCAAGTCGAGATGACGACCTTGAAATTCTACCAGAATGTCCAAGTGCTTCTTGTAAAAGGATCATCACAAAGGAGGTTAATCTTTCGGAGTATCTTGCGCAAACATGGAAACTAGTATGGTTGATTCCAATTGGCGGTAAAATAACCCGGAAAGAGATTATTGACCGAAAGATAGATGAGCAAGTGGAAAATTTGATTAAGTGGCTGAAAGACTTGTTTCCACAAGATGATGACAAGCATTTTCTGATCGGCATTCGACATCCGGAATACAGAGTTATGGTTAATAAATTAGAGAAGAATGCAATATTGGTTTGCCATGCAGTCATTCTGTACAATATCATTACATCTCTAATTAGGGGGGAAATGATGGCATCTGGAGGCAAAATAACAGAACTTGAGAAAAAGCTTACTGACGGTATCAAATATTACCTTTCAGATAGCGATGAGCAAGCTAAAAAGAAATTTGACATTATAGAACCTCTACAGTATTTGTTGGACAATTTGCAGTGGCGCGTGGGTATTTCTGAATATAAAATTAGTATAAACGCAAAGCAATTAAGTGAACTTGAAGATAGAAGATTTGAAGCGGAGAGGAAATCCTTGATGTGTCCCCAGTTGGAACCCTTGATAAAGGTAATTATGAGAAGTGGCGGCTCTGTTGAAATAGAGAAGCTTGAAAAGCTCATTAGCGATAGATATGCAGTTAACAGACTTACAATTCAAGGTCAGATTAATTTGCTAGTAAGTATGAACATTCTACGTTCGGATGGGAATGGAATTGATTTAGTAGAAGCTAACAAAAGCCACCAATCAATAGTCGCCCGGCTTGAGCACGCAGCAGATATAGCCTTGAAAAGTCTTGAAAACACAACGTCCAAGAAGCCTATTAAGTACTCGGCGTACATGAATAAGATTACAAAGGCATATAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

475

Amino Acids

55.07

Weight (kDa)

8.91

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	591
AccII	CGCG	1 cut(s)	1005
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	3 cut(s)	627, 1079, 1143
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	4 cut(s)	20, 516, 682, 953
AfaI	GTAC	3 cut(s)	824, 1385, 1394
AfiI	CCNNNNNNNGG	2 cut(s)	11, 626
AgsI	TTSAA	9 cut(s)	79, 515, 1061, 1076, 1154, 1169, 1214, 1345, 1355
AhlI	ACTAGT	1 cut(s)	604
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	6 cut(s)	253, 898, 944, 1165, 1174, 1286
AluI	AGCT	6 cut(s)	253, 898, 944, 1165, 1174, 1286
Alw21I	GWGCWC	1 cut(s)	1326
Alw26I	GTCTC	2 cut(s)	76, 292
AlwI	GGATC	1 cut(s)	560
Aor13HI	TCCGGA	1 cut(s)	754
ApeKI	GCWGC	1 cut(s)	1328
ApoI	RAATTY	4 cut(s)	20, 516, 682, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AseI	ATTAAT	1 cut(s)	1224
AspLEI	GCGC	3 cut(s)	358, 592, 1005
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	2 cut(s)	640, 1315
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	1326
BbvI	GCAGC	1 cut(s)	1340
BccI	CCATC	5 cut(s)	119, 161, 208, 853, 1253
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BcnI	CCSGG	2 cut(s)	640, 1315
BcoDI	GTCTC	2 cut(s)	76, 292
BcuI	ACTAGT	1 cut(s)	604
BfaI	CTAG	4 cut(s)	105, 428, 605, 1232
BfmI	CTRYAG	2 cut(s)	150, 974
BisI	GCNGC	2 cut(s)	1144, 1329
BlsI	GCNGC	2 cut(s)	1145, 1330
BmcAI	AGTACT	1 cut(s)	1385
Bme1390I	CCNGG	2 cut(s)	640, 1315
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	1113
BmrFI	CCNGG	2 cut(s)	640, 1315
BmrI	ACTGGG	1 cut(s)	1099
BmsI	GCATC	2 cut(s)	124, 872
BmuI	ACTGGG	1 cut(s)	1099
BpmI	CTGGAG	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	908, 1340
BpuMI	CCSGG	2 cut(s)	640, 1315
BsaI	GGTCTC	2 cut(s)	76, 292
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 626
Bse1I	ACTGG	2 cut(s)	318, 1105
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	754
BseGI	GGATG	2 cut(s)	751, 1264
BseLI	CCNNNNNNNGG	2 cut(s)	11, 626
BseMI	GCAATG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	318, 1105
BseXI	GCAGC	1 cut(s)	1340
Bsh1236I	CGCG	1 cut(s)	1005
BsiHKAI	GWGCWC	1 cut(s)	1326
BsiSI	CCGG	3 cut(s)	640, 755, 1315
BslFI	GGGAC	1 cut(s)	1086
BslI	CCNNNNNNNGG	2 cut(s)	11, 626
BsmAI	GTCTC	2 cut(s)	76, 292
BsmFI	GGGAC	1 cut(s)	1086
BsmI	GAATGC	2 cut(s)	744, 796
Bso31I	GGTCTC	2 cut(s)	76, 292
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	1326
Bsp13I	TCCGGA	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	822
Bsp143I	GATC	4 cut(s)	139, 457, 552, 738
BspACI	CCGC	3 cut(s)	627, 1079, 1143
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	1005
BspLI	GGNNCC	1 cut(s)	1113
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	336
BspTNI	GGTCTC	2 cut(s)	76, 292
BsrDI	GCAATG	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	318, 1105
BssMI	GATC	4 cut(s)	139, 457, 552, 738
Bst4CI	ACNGT	5 cut(s)	243, 286, 412, 908, 978
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	822
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	942, 1326
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	751, 1264
BstFNI	CGCG	1 cut(s)	1005
BstHHI	GCGC	3 cut(s)	358, 592, 1005
BstKTI	GATC	4 cut(s)	142, 460, 555, 741
BstMAI	GTCTC	2 cut(s)	76, 292
BstMBI	GATC	4 cut(s)	139, 457, 552, 738
BstMWI	GCNNNNNNNGC	2 cut(s)	1171, 1337
BstSCI	CCNGG	2 cut(s)	638, 1313
BstSFI	CTRYAG	2 cut(s)	150, 974
BstUI	CGCG	1 cut(s)	1005
BstV1I	GCAGC	1 cut(s)	1340
BtgZI	GCGATG	2 cut(s)	227, 948
BtsCI	GGATG	2 cut(s)	751, 1264
BtsI	GCAGTG	1 cut(s)	1004
BtsIMutI	CAGTG	1 cut(s)	1004
Cac8I	GCNNGC	2 cut(s)	942, 1326
CfoI	GCGC	3 cut(s)	358, 592, 1005
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	823, 1384, 1393
CviAII	CATG	7 cut(s)	27, 209, 371, 478, 597, 809, 1396
CviQI	GTAC	3 cut(s)	823, 1384, 1393
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	141, 459, 554, 740
DpnII	GATC	4 cut(s)	139, 457, 552, 738
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	76, 292
Eco47I	GGWCC	1 cut(s)	481
FaeI	CATG	7 cut(s)	30, 212, 374, 481, 600, 812, 1399
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 526, 558
FaqI	GGGAC	1 cut(s)	1086
FatI	CATG	7 cut(s)	26, 208, 370, 477, 596, 808, 1395
Fnu4HI	GCNGC	2 cut(s)	1144, 1329
FokI	GGATG	2 cut(s)	738, 1271
Fsp4HI	GCNGC	2 cut(s)	1144, 1329
FspBI	CTAG	4 cut(s)	105, 428, 605, 1232
FspI	TGCGCA	1 cut(s)	591
GlaI	GCGC	3 cut(s)	357, 591, 1004
GluI	GCNGC	2 cut(s)	1144, 1329
GsuI	CTGGAG	1 cut(s)	888
HapII	CCGG	3 cut(s)	640, 755, 1315
HhaI	GCGC	3 cut(s)	358, 592, 1005
Hin1II	CATG	7 cut(s)	30, 212, 374, 481, 600, 812, 1399
Hin6I	GCGC	3 cut(s)	356, 590, 1003
HinP1I	GCGC	3 cut(s)	356, 590, 1003
HincII	GTYRAC	1 cut(s)	1198
HindII	GTYRAC	1 cut(s)	1198
HindIII	AAGCTT	2 cut(s)	896, 1163
HinfI	GANTC	1 cut(s)	616
HpaI	GTTAAC	1 cut(s)	1198
HpaII	CCGG	3 cut(s)	640, 755, 1315
Hpy166II	GTNNAC	3 cut(s)	391, 1055, 1198
Hpy188III	TCNNGA	5 cut(s)	392, 500, 755, 867, 1352
Hpy8I	GTNNAC	3 cut(s)	391, 1055, 1198
HpyCH4III	ACNGT	5 cut(s)	243, 286, 412, 908, 978
HpyCH4IV	ACGT	4 cut(s)	205, 424, 1252, 1364
HpyCH4V	TGCA	8 cut(s)	115, 374, 386, 477, 794, 812, 997, 1193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1171, 1337
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	4 cut(s)	205, 424, 1252, 1364
Hsp92II	CATG	7 cut(s)	30, 212, 374, 481, 600, 812, 1399
HspAI	GCGC	3 cut(s)	356, 590, 1003
Kpn2I	TCCGGA	1 cut(s)	754
KspAI	GTTAAC	1 cut(s)	1198
Kzo9I	GATC	4 cut(s)	139, 457, 552, 738
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	7 cut(s)	299, 537, 653, 768, 852, 1118, 1328
Lsp1109I	GCAGC	1 cut(s)	1340
LweI	GCATC	2 cut(s)	124, 872
MaeI	CTAG	4 cut(s)	105, 428, 605, 1232
MaeII	ACGT	4 cut(s)	205, 424, 1252, 1364
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	4 cut(s)	141, 459, 554, 740
MboI	GATC	4 cut(s)	139, 457, 552, 738
MboII	GAAGA	5 cut(s)	43, 260, 799, 1073, 1080
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	1326
MmeI	TCCRAC	3 cut(s)	225, 966, 1089
MnlI	CCTC	8 cut(s)	4, 45, 56, 494, 559, 863, 981, 1077
MroI	TCCGGA	1 cut(s)	754
MseI	TTAA	9 cut(s)	45, 414, 570, 690, 774, 1049, 1197, 1224, 1380
MslI	CAYNNNNRTG	2 cut(s)	79, 120
MspI	CCGG	3 cut(s)	640, 755, 1315
MspR9I	CCNGG	2 cut(s)	640, 1315
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	2 cut(s)	744, 796
MvnI	CGCG	1 cut(s)	1005
MwoI	GCNNNNNNNGC	2 cut(s)	1171, 1337
NciI	CCSGG	2 cut(s)	640, 1315
NdeII	GATC	4 cut(s)	139, 457, 552, 738
NlaIII	CATG	7 cut(s)	30, 212, 374, 481, 600, 812, 1399
NlaIV	GGNNCC	1 cut(s)	1113
NmeAIII	GCCGAG	1 cut(s)	1367
NsbI	TGCGCA	1 cut(s)	591
NspV	TTCGAA	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	2 cut(s)	744, 796
PfeI	GAWTC	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	1145, 1330
PshBI	ATTAAT	1 cut(s)	1224
PspN4I	GGNNCC	1 cut(s)	1113
PspPI	GGNCC	1 cut(s)	481
RsaI	GTAC	3 cut(s)	824, 1385, 1394
RsaNI	GTAC	3 cut(s)	823, 1384, 1393
RseI	CAYNNNNRTG	2 cut(s)	79, 120
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	9 cut(s)	45, 414, 570, 690, 774, 1049, 1197, 1224, 1380
SatI	GCNGC	2 cut(s)	1144, 1329
Sau3AI	GATC	4 cut(s)	139, 457, 552, 738
Sau96I	GGNCC	1 cut(s)	481
ScaI	AGTACT	1 cut(s)	1385
ScrFI	CCNGG	2 cut(s)	640, 1315
SduI	GDGCHC	1 cut(s)	1326
SfaNI	GCATC	2 cut(s)	124, 872
SfcI	CTRYAG	2 cut(s)	150, 974
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	2 cut(s)	79, 120
SmlI	CTYRAG	2 cut(s)	887, 1319
SmoI	CTYRAG	2 cut(s)	887, 1319
SpeI	ACTAGT	1 cut(s)	604
SsiI	CCGC	3 cut(s)	627, 1079, 1143
SspI	AATATT	4 cut(s)	93, 295, 798, 917
SspMI	CTAG	4 cut(s)	105, 428, 605, 1232
StyD4I	CCNGG	2 cut(s)	638, 1313
TaaI	ACNGT	5 cut(s)	243, 286, 412, 908, 978
TaiI	ACGT	4 cut(s)	208, 427, 1255, 1367
TaqI	TCGA	3 cut(s)	336, 499, 748
TaqII	GACCGA	1 cut(s)	672
TatI	WGTACW	2 cut(s)	822, 1383
TauI	GCSGC	1 cut(s)	1146
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	9 cut(s)	45, 414, 570, 690, 774, 1049, 1197, 1224, 1380
Tru9I	TTAA	9 cut(s)	45, 414, 570, 690, 774, 1049, 1197, 1224, 1380
TscAI	CASTG	1 cut(s)	1004
TseI	GCWGC	1 cut(s)	1328
TspDTI	ATGAA	5 cut(s)	86, 359, 435, 1256, 1412
TspRI	CASTG	1 cut(s)	1004
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	1224
XapI	RAATTY	4 cut(s)	20, 516, 682, 953
XspI	CTAG	4 cut(s)	105, 428, 605, 1232
ZrmI	AGTACT	1 cut(s)	1385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.