Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014842.1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

26046 .. 26627

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014842.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgtatcctactattttgttctggaactgccgtggactgagtgactcagccatttatatgctaaaagttcttatacgtatctatgacccttcaattattttccttatagagactcgtttgtcgtctgaggttatgaaagaagtctcttccttgctagggtttcataatgtttgggattctcctacaagcagaggggcagccggtaaagataattgtgttggtttatccatgttattgagaacaaatgtaaatgtcgaatttttaaataagacaagcaattatcttgatttcgtgattaacgtaagtcctactggtcagaagtggaggttgacaggattctatggggacccaaaattgaagtatcgctcatgggagtggctccgaagcttatcaaaaattaagacgaatctcccatggataatttttggggactttaatgaaattttagatcgggatgagaaaaagggcggaccagaaaagagcaaatcgaagataaaggcgttcaagaatgttgtcaaagaatgtggtctttgtgatgacatgccttttgagggtggtaaattaatttacatggaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

193

Amino Acids

22.2

Weight (kDa)

8.8

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	118
AciI	CCGC	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	257, 441
AfiI	CCNNNNNNNGG	2 cut(s)	156, 551
AgsI	TTSAA	3 cut(s)	93, 358, 505
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	104, 148
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	257, 441
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AseI	ATTAAT	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	346, 470
AvaII	GGWCC	2 cut(s)	346, 470
BbvI	GCAGC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	104, 148
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	2 cut(s)	346, 470
BmgT120I	GGNCC	2 cut(s)	346, 470
BmiI	GGNNCC	3 cut(s)	347, 348, 380
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	31, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 551
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	31, 413
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	156, 551
BseMII	CTCAG	3 cut(s)	29, 60, 117
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	359, 443
BslI	CCNNNNNNNGG	2 cut(s)	156, 551
BsmAI	GTCTC	2 cut(s)	104, 148
BsmFI	GGGAC	2 cut(s)	359, 443
Bsp143I	GATC	1 cut(s)	448
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	1 cut(s)	468
BspCNI	CTCAG	3 cut(s)	30, 59, 118
BspLI	GGNNCC	3 cut(s)	347, 348, 380
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	31, 413
BssMI	GATC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	38, 46, 126
BstDSI	CCRYGG	2 cut(s)	31, 413
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	104, 148
BstMBI	GATC	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	544
BstSNI	TACGTA	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	15
BtgI	CCRYGG	2 cut(s)	31, 413
BtsCI	GGATG	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	346, 470
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CviAII	CATG	5 cut(s)	229, 369, 414, 541, 571
CviJI	RGCY	4 cut(s)	50, 200, 379, 387
CviKI_1	RGCY	4 cut(s)	50, 200, 379, 387
DdeI	CTNAG	3 cut(s)	38, 46, 126
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraI	TTTAAA	1 cut(s)	264
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	483
Eco105I	TACGTA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	346, 470
EcoO109I	RGGNCCY	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	5 cut(s)	232, 372, 417, 544, 574
FaqI	GGGAC	2 cut(s)	359, 443
FatI	CATG	5 cut(s)	228, 368, 413, 540, 570
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	5 cut(s)	232, 372, 417, 544, 574
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	5 cut(s)	44, 112, 176, 336, 406
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	35, 330
Hpy188I	TCNGA	3 cut(s)	127, 318, 383
Hpy188III	TCNNGA	5 cut(s)	22, 284, 292, 452, 505
Hpy8I	GTNNAC	2 cut(s)	35, 330
HpyAV	CCTTC	1 cut(s)	99
HpyCH4IV	ACGT	2 cut(s)	76, 300
HpyF3I	CTNAG	3 cut(s)	38, 46, 126
HpySE526I	ACGT	2 cut(s)	76, 300
Hsp92II	CATG	5 cut(s)	232, 372, 417, 544, 574
KflI	GGGWCCC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	384
LpnPI	CCDG	5 cut(s)	7, 214, 297, 318, 486
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	76, 300
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	2 cut(s)	138, 502
MlyI	GAGTC	2 cut(s)	38, 106
MnlI	CCTC	4 cut(s)	121, 185, 318, 544
MseI	TTAA	5 cut(s)	263, 297, 399, 435, 563
MslI	CAYNNNNRTG	2 cut(s)	56, 373
MspI	CCGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	5 cut(s)	232, 372, 417, 544, 574
NlaIV	GGNNCC	3 cut(s)	347, 348, 380
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	176, 336, 406
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	2 cut(s)	38, 106
PpsI	GAGTC	2 cut(s)	38, 106
Ppu21I	YACGTR	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	347, 348, 380
PspPI	GGNCC	2 cut(s)	346, 470
PspPPI	RGGWCCY	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	56, 373
SaqAI	TTAA	5 cut(s)	263, 297, 399, 435, 563
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	346, 470
SchI	GAGTC	2 cut(s)	38, 106
SetI	ASST	5 cut(s)	79, 132, 303, 329, 389
SinI	GGWCC	2 cut(s)	346, 470
SmiMI	CAYNNNNRTG	2 cut(s)	56, 373
SnaBI	TACGTA	1 cut(s)	77
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	413
TaiI	ACGT	2 cut(s)	79, 303
TaqI	TCGA	2 cut(s)	255, 488
TfiI	GAWTC	3 cut(s)	176, 336, 406
Tru1I	TTAA	5 cut(s)	263, 297, 399, 435, 563
Tru9I	TTAA	5 cut(s)	263, 297, 399, 435, 563
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	149, 152, 453
VpaK11BI	GGWCC	2 cut(s)	346, 470
VspI	ATTAAT	1 cut(s)	563
XapI	RAATTY	2 cut(s)	257, 441
XceI	RCATGY	1 cut(s)	544
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.