Rorug06G0426200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001839
Physical Location & Seq
Forward (+)
56317612 .. 56319553
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0426200.1

Sequence Viewer

Length: 1275 bp
ATGGGCTCCGTCTCTCTGAAGATCGGCGACGGCACCGCCAGATTCCGACGCGCCACCCTGTGCTCCTCCGCCGTCAACATTCTGATGCTCTTCTCCGTCCTCACCACGAACCTCTTCGCCCTCTACGCCTTCACCTCCTCCCCCTCCCCAAAAGACCAGCAGCAGGCCCAGCACCTCCTCCACCACACCCAGAAGAACATGTCCCTCATCTCCGAGCAGGTCTCCCTGATCCTCCGCGAGATCGACTCCTCCCAGAAGAAGCTCGCCCAGATGGAGAATGACCTCTTGGGCTACCAAACCATCGATCTTTCCCGCCCCAATACGCCTAATGAGCTCAAGAGATTCCTCCAGCATCACACCCTTCCTCTCGGCAAAGACTCGAGAACCGGGATCACCGAGATGGTGGCCTCCGTGGGACATTCCTGCGAGAAATCCGGGGATTTGTTGTCCCAGTACATGAACTACAAGGTCTCTGGGCCCTGCCCCGACGACTGGAGCCTGGCCCAGAGGCTGATTCTTCGCGGATGCGAGCCTCTGCCGAGGAGGAGGTGCTTTGCCAAGACCGTGCCCAAGGTTGGTTTAACTACTTTTCCGCTTTCGCTTTGGAAAAATGTTAGTGCTAAGAGTGTTACTTGGAGCGGTCTAGGGTGTAAGAATTTCGAGTGCTTGAGTAGTAAGAAATTGAGTAGGGAGTGCGTTGGTTGCTTTGATTTGAGTAATGGGGGGGATGAGAAACAGAGATTTGTTAAGGCTAGGAGCAAGAACGATTTCGTGATTGATGATGTGCTGGCTTTGGGAGGTGGGGGAATGAGAGTGGGGTTTGATGTTGGAGGTGGCTCTGGTACATTTGCTGCTACAATGGCGGAGAGGAATGTGACTGTGATCACCAACACTTTGAACATTGATGCCCCGTATAGCGAGTTCATAGCTGCTAGAGGGCTGTTTCCGCTGTTTTTGAGCTTGGATCATAGATTTCCTTTCTATGATAATGTGTTTGATTTGGTTCATGCTGCGAGTGGATTGGATGTTGGTGGAAAACCGGACAAGTTTGAGTTCTTGATGTTTGATATCGATCGGATCTTGAGGCCTGGAGGTTTGTTTTGGTTAGACAACTTTCATTGTGCCAATGAAGAGAGGAAAAAGGACTTAACCAGGTTAATTGAGAGGTTTGGATATAAAAAGCTGAAATGGGTTGTTGCAGTAGATGCTGCATCAGGGTCAAGCAAATTCGAGGTTTACTTGTCCGCAGTTCTGCAAAAACCAGTAAGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

47.11

Weight (kDa)

9.06

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 268 - 374 9.8e-08 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 639
AccII CGCG 3 cut(s) 51, 237, 522
AclWI GGATC 4 cut(s) 223, 398, 972, 1085
AcsI RAATTY 2 cut(s) 655, 1226
AcuI CTGAAG 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 60
AfaI GTAC 2 cut(s) 455, 844
AfiI CCNNNNNNNGG 3 cut(s) 163, 492, 575
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 1 cut(s) 898
AjnI CCWGG 3 cut(s) 498, 1087, 1151
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 5 cut(s) 262, 334, 929, 960, 1183
AluI AGCT 5 cut(s) 262, 334, 929, 960, 1183
Alw21I GWGCWC 2 cut(s) 65, 336
Alw26I GTCTC 3 cut(s) 16, 226, 475
AlwI GGATC 4 cut(s) 223, 398, 972, 1085
AlwNI CAGNNNCTG 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 5 cut(s) 165, 405, 476, 501, 1085
ApaI GGGCCC 1 cut(s) 480
ApeKI GCWGC 5 cut(s) 160, 851, 929, 1010, 1208
ApoI RAATTY 2 cut(s) 655, 1226
Asp700I GAANNNNTTC 2 cut(s) 113, 767
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 166, 476, 477, 502
AsuC2I CCSGG 2 cut(s) 388, 436
AsuHPI GGTGA 4 cut(s) 94, 124, 385, 877
AvaI CYCGRG 1 cut(s) 379
BaeGI GKGCMC 2 cut(s) 480, 570
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 3 cut(s) 8, 336, 480
Bbv12I GWGCWC 2 cut(s) 65, 336
BbvI GCAGC 5 cut(s) 172, 838, 916, 997, 1195
BccI CCATC 3 cut(s) 265, 308, 394
BceAI ACGGC 2 cut(s) 46, 56
BciT130I CCWGG 3 cut(s) 500, 1089, 1153
BclI TGATCA 1 cut(s) 882
BcnI CCSGG 2 cut(s) 388, 436
BcoDI GTCTC 3 cut(s) 16, 226, 475
BfaI CTAG 3 cut(s) 644, 753, 933
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 5 cut(s) 161, 852, 930, 1011, 1209
BlsI GCNGC 5 cut(s) 162, 853, 931, 1012, 1210
Bme1390I CCNGG 5 cut(s) 388, 436, 500, 1089, 1153
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 4 cut(s) 166, 476, 477, 502
BmiI GGNNCC 4 cut(s) 7, 34, 478, 497
BmrFI CCNGG 5 cut(s) 388, 436, 500, 1089, 1153
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 6 cut(s) 75, 361, 515, 895, 1195, 1220
BmuI ACTGGG 1 cut(s) 445
BplI GAGNNNNNCTC 4 cut(s) 206, 238, 230, 262
BpmI CTGGAG 3 cut(s) 332, 514, 1110
BpuEI CTTGAG 3 cut(s) 320, 688, 1102
BpuMI CCSGG 2 cut(s) 388, 436
Bsa29I ATCGAT 2 cut(s) 303, 1071
BsaBI GATNNNNATC 1 cut(s) 1071
BsaI GGTCTC 2 cut(s) 226, 475
BsaJI CCNNGG 4 cut(s) 411, 435, 539, 570
BsaWI WCCGGW 1 cut(s) 1039
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 492, 575
Bse1I ACTGG 3 cut(s) 451, 497, 1262
Bse8I GATNNNNATC 1 cut(s) 1071
BseBI CCWGG 3 cut(s) 500, 1089, 1153
BseCI ATCGAT 2 cut(s) 303, 1071
BseDI CCNNGG 4 cut(s) 411, 435, 539, 570
BseGI GGATG 3 cut(s) 530, 733, 1030
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 3 cut(s) 163, 492, 575
BseNI ACTGG 3 cut(s) 451, 497, 1262
BseRI GAGGAG 6 cut(s) 55, 127, 167, 238, 556, 559
BseSI GKGCMC 2 cut(s) 480, 570
BseXI GCAGC 5 cut(s) 172, 838, 916, 997, 1195
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 3 cut(s) 51, 237, 522
Bsh1285I CGRYCG 1 cut(s) 1075
BshFI GGCC 5 cut(s) 167, 407, 478, 503, 1087
BshNI GGYRCC 1 cut(s) 32
BshVI ATCGAT 2 cut(s) 303, 1071
BsiEI CGRYCG 1 cut(s) 1075
BsiHKAI GWGCWC 2 cut(s) 65, 336
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 3 cut(s) 387, 435, 1040
BslFI GGGAC 3 cut(s) 187, 429, 433
BslI CCNNNNNNNGG 3 cut(s) 163, 492, 575
BsmAI GTCTC 3 cut(s) 16, 226, 475
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 3 cut(s) 187, 429, 433
BsnI GGCC 5 cut(s) 167, 407, 478, 503, 1087
Bso31I GGTCTC 2 cut(s) 226, 475
BsoBI CYCGRG 1 cut(s) 379
Bsp120I GGGCCC 1 cut(s) 476
Bsp1286I GDGCHC 5 cut(s) 8, 65, 336, 480, 570
Bsp143I GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
BspANI GGCC 5 cut(s) 167, 407, 478, 503, 1087
BspDI ATCGAT 2 cut(s) 303, 1071
BspFNI CGCG 3 cut(s) 51, 237, 522
BspLI GGNNCC 4 cut(s) 7, 34, 478, 497
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 4 cut(s) 223, 398, 972, 1085
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 2 cut(s) 226, 475
BsrBI CCGCTC 1 cut(s) 639
BsrI ACTGG 3 cut(s) 451, 497, 1262
BssECI CCNNGG 4 cut(s) 411, 435, 539, 570
BssMI GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 3 cut(s) 500, 1089, 1153
Bst4CI ACNGT 2 cut(s) 565, 880
Bst6I CTCTTC 3 cut(s) 95, 119, 1125
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstC8I GCNNGC 4 cut(s) 165, 264, 530, 789
BstDEI CTNAG 1 cut(s) 621
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 530, 733, 1030
BstFNI CGCG 3 cut(s) 51, 237, 522
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 9 cut(s) 24, 231, 243, 307, 393, 885, 967, 1075, 1080
BstMAI GTCTC 3 cut(s) 16, 226, 475
BstMBI GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
BstMCI CGRYCG 1 cut(s) 1075
BstMWI GCNNNNNNNGC 7 cut(s) 125, 169, 331, 702, 860, 946, 1205
BstNI CCWGG 3 cut(s) 500, 1089, 1153
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 5 cut(s) 386, 434, 498, 1087, 1151
BstSLI GKGCMC 2 cut(s) 480, 570
BstUI CGCG 3 cut(s) 51, 237, 522
BstV1I GCAGC 5 cut(s) 172, 838, 916, 997, 1195
BstX2I RGATCY 1 cut(s) 1077
BstYI RGATCY 1 cut(s) 1077
Bsu15I ATCGAT 2 cut(s) 303, 1071
BsuRI GGCC 5 cut(s) 167, 407, 478, 503, 1087
BsuTUI ATCGAT 2 cut(s) 303, 1071
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 3 cut(s) 530, 733, 1030
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 165, 264, 530, 789
CaiI CAGNNNCTG 1 cut(s) 511
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 166, 476, 477, 502
ClaI ATCGAT 2 cut(s) 303, 1071
CseI GACGC 1 cut(s) 57
CsiI ACCWGGT 1 cut(s) 1151
Csp6I GTAC 2 cut(s) 454, 843
CviAII CATG 3 cut(s) 199, 457, 1007
CviQI GTAC 2 cut(s) 454, 843
DdeI CTNAG 1 cut(s) 621
DpnI GATC 9 cut(s) 23, 230, 242, 306, 392, 884, 966, 1074, 1079
DpnII GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
DraIII CACNNNGTG 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 95, 119, 1125
EarI CTCTTC 3 cut(s) 95, 119, 1125
EciI GGCGGA 2 cut(s) 58, 878
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 1087
Eco24I GRGCYC 3 cut(s) 8, 336, 480
Eco31I GGTCTC 2 cut(s) 226, 475
Eco32I GATATC 1 cut(s) 1069
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 477
EcoRII CCWGG 3 cut(s) 498, 1087, 1151
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 3 cut(s) 8, 336, 480
ErhI CCWWGG 1 cut(s) 570
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 3 cut(s) 202, 460, 1010
FaiI YATR 9 cut(s) 200, 458, 915, 926, 969, 984, 1008, 1176, 1273
FaqI GGGAC 3 cut(s) 187, 429, 433
FatI CATG 3 cut(s) 198, 456, 1006
FauI CCCGC 1 cut(s) 320
FbaI TGATCA 1 cut(s) 882
Fnu4HI GCNGC 5 cut(s) 161, 852, 930, 1011, 1209
FokI GGATG 3 cut(s) 537, 740, 1037
FriOI GRGCYC 3 cut(s) 8, 336, 480
Fsp4HI GCNGC 5 cut(s) 161, 852, 930, 1011, 1209
FspBI CTAG 3 cut(s) 644, 753, 933
GlaI GCGC 1 cut(s) 52
GluI GCNGC 5 cut(s) 161, 852, 930, 1011, 1209
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 3 cut(s) 332, 514, 1110
HaeIII GGCC 5 cut(s) 167, 407, 478, 503, 1087
HapII CCGG 3 cut(s) 387, 435, 1040
HgaI GACGC 1 cut(s) 57
HhaI GCGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 202, 460, 1010
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 5 cut(s) 42, 245, 342, 377, 514
HpaII CCGG 3 cut(s) 387, 435, 1040
HphI GGTGA 4 cut(s) 94, 124, 385, 877
Hpy166II GTNNAC 2 cut(s) 76, 1237
Hpy188I TCNGA 5 cut(s) 18, 47, 84, 214, 1077
Hpy188III TCNNGA 5 cut(s) 337, 381, 772, 1057, 1081
Hpy8I GTNNAC 2 cut(s) 76, 1237
Hpy99I CGWCG 3 cut(s) 32, 51, 491
HpyAV CCTTC 2 cut(s) 139, 371
HpyCH4III ACNGT 2 cut(s) 565, 880
HpyCH4V TGCA 3 cut(s) 1199, 1211, 1255
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 169, 331, 702, 860, 946, 1205
HpyF3I CTNAG 1 cut(s) 621
Hsp92II CATG 3 cut(s) 202, 460, 1010
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 882
Kzo9I GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 5 cut(s) 11, 68, 495, 636, 756
Lsp1109I GCAGC 5 cut(s) 172, 838, 916, 997, 1195
LweI GCATC 6 cut(s) 75, 361, 515, 895, 1195, 1220
MabI ACCWGGT 1 cut(s) 1151
MaeI CTAG 3 cut(s) 644, 753, 933
MaeIII GTNAC 2 cut(s) 628, 874
MalI GATC 9 cut(s) 23, 230, 242, 306, 392, 884, 966, 1074, 1079
MbiI CCGCTC 1 cut(s) 639
MboI GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
MboII GAAGA 7 cut(s) 31, 82, 106, 205, 268, 509, 1142
MflI RGATCY 1 cut(s) 1077
MhlI GDGCHC 5 cut(s) 8, 65, 336, 480, 570
MluCI AATT 4 cut(s) 655, 680, 1158, 1226
MlyI GAGTC 2 cut(s) 239, 371
MmeI TCCRAC 2 cut(s) 70, 808
MroXI GAANNNNTTC 2 cut(s) 113, 767
MseI TTAA 4 cut(s) 581, 747, 1148, 1157
MslI CAYNNNNRTG 2 cut(s) 83, 398
MspA1I CMGCKG 1 cut(s) 949
MspI CCGG 3 cut(s) 387, 435, 1040
MspR9I CCNGG 5 cut(s) 388, 436, 500, 1089, 1153
MvaI CCWGG 3 cut(s) 500, 1089, 1153
MvnI CGCG 3 cut(s) 51, 237, 522
MwoI GCNNNNNNNGC 7 cut(s) 125, 169, 331, 702, 860, 946, 1205
NciI CCSGG 2 cut(s) 388, 436
NdeII GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
NlaIII CATG 3 cut(s) 202, 460, 1010
NlaIV GGNNCC 4 cut(s) 7, 34, 478, 497
NmeAIII GCCGAG 2 cut(s) 348, 564
NmuCI GTSAC 1 cut(s) 874
NspI RCATGY 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 379
PceI AGGCCT 1 cut(s) 1087
PciI ACATGT 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 113, 767
PfeI GAWTC 3 cut(s) 42, 342, 514
PkrI GCNGC 5 cut(s) 162, 853, 931, 1012, 1210
Ple19I CGATCG 1 cut(s) 1075
PleI GAGTC 2 cut(s) 239, 371
PpsI GAGTC 2 cut(s) 239, 371
PscI ACATGT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 3 cut(s) 498, 1087, 1151
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 3 cut(s) 498, 1087, 1151
PspN4I GGNNCC 4 cut(s) 7, 34, 478, 497
PspOMI GGGCCC 1 cut(s) 476
PspPI GGNCC 4 cut(s) 166, 476, 477, 502
PsrI GAACNNNNNNTAC 2 cut(s) 905, 937
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 1077
PvuI CGATCG 1 cut(s) 1075
RsaI GTAC 2 cut(s) 455, 844
RsaNI GTAC 2 cut(s) 454, 843
RseI CAYNNNNRTG 2 cut(s) 83, 398
SacI GAGCTC 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 581, 747, 1148, 1157
SatI GCNGC 5 cut(s) 161, 852, 930, 1011, 1209
Sau3AI GATC 9 cut(s) 21, 228, 240, 304, 390, 882, 964, 1072, 1077
Sau96I GGNCC 4 cut(s) 166, 476, 477, 502
SchI GAGTC 2 cut(s) 239, 371
ScrFI CCNGG 5 cut(s) 388, 436, 500, 1089, 1153
SduI GDGCHC 5 cut(s) 8, 65, 336, 480, 570
SexAI ACCWGGT 1 cut(s) 1151
SfaNI GCATC 6 cut(s) 75, 361, 515, 895, 1195, 1220
Sfr274I CTCGAG 1 cut(s) 379
SlaI CTCGAG 1 cut(s) 379
SmiMI CAYNNNNRTG 2 cut(s) 83, 398
SmlI CTYRAG 4 cut(s) 335, 379, 667, 1081
SmoI CTYRAG 4 cut(s) 335, 379, 667, 1081
Sse9I AATT 4 cut(s) 655, 680, 1158, 1226
SseBI AGGCCT 1 cut(s) 1087
SspMI CTAG 3 cut(s) 644, 753, 933
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 1087
StyD4I CCNGG 5 cut(s) 386, 434, 498, 1087, 1151
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 565, 880
TaqI TCGA 6 cut(s) 243, 303, 380, 660, 1071, 1230
TasI AATT 4 cut(s) 655, 680, 1158, 1226
TatI WGTACW 1 cut(s) 453
TfiI GAWTC 3 cut(s) 42, 342, 514
Tru1I TTAA 4 cut(s) 581, 747, 1148, 1157
Tru9I TTAA 4 cut(s) 581, 747, 1148, 1157
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 5 cut(s) 160, 851, 929, 1010, 1208
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 5 cut(s) 473, 913, 995, 1106, 1143
TspGWI ACGGA 2 cut(s) 85, 400
XapI RAATTY 2 cut(s) 655, 1226
XceI RCATGY 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 113, 767
XspI CTAG 3 cut(s) 644, 753, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.