Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

1880416 .. 1913312

Gene Structure 32897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG026400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGTCCATTCCCACTGAGCTCCCGGCTGATGATCGAGTGGTGGAGGAGATCCCCGCAACAAATGAAGTTGGCCCCCTTGTTTCTTTGGGTCCACCTGCTTCGTCCAACGAACCTATAATCCAAGAGGAAAAGGTTATCGATGCTACCGACTCCTTCTTCATACAAGTCAGTGATTGGCGTCAACCTACGATAATCGGTTCGATCGCCTTTACTATTCTGACGGAACTCCGTAAATCTAAGGAGATAAACGAGGAGATTATTAGAAAAGTTGTTCAGTTGTACCCAAAAGTCCCGGGTGCGGAGGAGGAGGAGGAGGATGAAATCGAGAAGTTGGCGGCGGCTTTAGGGTCGGAGGCCGAGGAGGAGACGGAGCAGGAGCCGGAGCCGGAGGTTGAGGATCTTCCTGATCCCGAGTGTGATGATTTTGATTTTGATTTTGATTTAGTAGGAGACTGCATGGATAGGGCAAAGGAGGCAGAACCGACAGAACAAGACAGGAAAGAGTTGTTGAAACAGTGCAGTGAAATGGGGTGCCGATTGAAACAAGGCGACGAACAGAAGATCCTCGATCTGATGATTCCTTTCTTGAGCAGCAATTTTACACGGTTCTCATCTGATATAACTGATCGGACAATCTGCATCGAAGCATTCATGGAACATGTCCAAGATTATATCAATCGTTCTTGCATCCTGAACGACTTGGGGACGGTGAAACGCGCCATTCAGACTGTGAATAAGTTAATGCAAGTAGAAGAAGATTTGAAAAAGGAGCAGCATCAGAGTGTCAGCAGAATGTTAAAGAAGGATATCGTATTAACTAAAGAAGAAGGGATTGCTACGCCCATATACCTCTTAAAACAAGAAGAGAAAAGGTCAGTTAATGTGCGACTAGGGGCAGAGCTAAGAGAAAGCTCCCCCATAGAAGCAGTCATGATAGACAATCCCCGGATAAACTTTATTATAGCCAACGGTACTGAGAAAGAGAAGCTTGTAAAACTCGTTGACCTGAGTACAATTCGACGCCAGCTTGAGGTGCTAGAAAATATTGGCTGCATTTCATGTTCAAAAACTTATGAAATTGCTTCATCCAAAGTTGATAAAAACCGCGAATCAATATTATGCCGGCTTCAGAAGGCAGCAAGTGAAGCTTTGAAAACGGCCTCTGAAAATAAGAAGTCTATGACTTACAAAGCGTACATGTGTAAGCTTAAAGAGGCATACAACAGAAGTGAGAATAATAAGAAGCGGGAGGTGGTGGGAGATGGTGAGAAACAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

48.36

Weight (kDa)

4.72

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	103
Acc36I	ACCTGC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	531
AccII	CGCG	2 cut(s)	717, 1107
AciI	CCGC	6 cut(s)	54, 299, 335, 338, 1105, 1246
AclWI	GGATC	4 cut(s)	43, 401, 405, 556
AcuI	CTGAAG	1 cut(s)	1112
AcyI	GRCGYC	2 cut(s)	178, 1021
AfaI	GTAC	4 cut(s)	281, 973, 1012, 1196
AfiI	CCNNNNNNNGG	2 cut(s)	298, 1030
AflIII	ACRYGT	2 cut(s)	658, 1197
AgsI	TTSAA	5 cut(s)	511, 541, 763, 1065, 1153
AloI	GAACNNNNNNTCC	4 cut(s)	102, 134, 546, 578
AluBI	AGCT	7 cut(s)	19, 901, 912, 988, 1027, 1148, 1207
AluI	AGCT	7 cut(s)	19, 901, 912, 988, 1027, 1148, 1207
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	359, 444
AlwI	GGATC	4 cut(s)	43, 401, 405, 556
Ama87I	CYCGRG	2 cut(s)	292, 410
AoxI	GGCC	3 cut(s)	70, 354, 1158
ApeKI	GCWGC	4 cut(s)	591, 772, 1050, 1136
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	71, 89
AsuC2I	CCSGG	4 cut(s)	23, 293, 294, 946
AsuHPI	GGTGA	2 cut(s)	721, 1277
AvaI	CYCGRG	2 cut(s)	292, 410
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	603, 784, 1037, 1148
BccI	CCATC	1 cut(s)	1256
BceAI	ACGGC	1 cut(s)	1173
BcnI	CCSGG	4 cut(s)	23, 293, 294, 946
BcoDI	GTCTC	2 cut(s)	359, 444
BfaI	CTAG	2 cut(s)	890, 1037
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	6 cut(s)	336, 339, 592, 773, 1051, 1137
BlsI	GCNGC	6 cut(s)	337, 340, 593, 774, 1052, 1138
Bme1390I	CCNGG	4 cut(s)	23, 293, 294, 946
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	292, 410
BmgT120I	GGNCC	2 cut(s)	71, 89
BmiI	GGNNCC	5 cut(s)	73, 90, 378, 384, 533
BmrFI	CCNGG	4 cut(s)	23, 293, 294, 946
BmsI	GCATC	4 cut(s)	130, 648, 696, 784
BpuEI	CTTGAG	2 cut(s)	607, 1049
BpuMI	CCSGG	4 cut(s)	23, 293, 294, 946
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	178, 1021
BsaJI	CCNNGG	3 cut(s)	292, 357, 944
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 1030
Bse118I	RCCGGY	1 cut(s)	1122
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	292, 357, 944
BseGI	GGATG	3 cut(s)	322, 687, 1085
BseLI	CCNNNNNNNGG	2 cut(s)	298, 1030
BseMII	CTCAG	3 cut(s)	6, 966, 998
BseRI	GAGGAG	8 cut(s)	59, 266, 317, 320, 323, 326, 374, 377
BseXI	GCAGC	4 cut(s)	603, 784, 1037, 1148
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	2 cut(s)	717, 1107
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	72, 356, 1160
BshNI	GGYRCC	1 cut(s)	531
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	292, 410
BsiSI	CCGG	6 cut(s)	23, 293, 380, 386, 946, 1123
BslFI	GGGAC	2 cut(s)	275, 718
BslI	CCNNNNNNNGG	2 cut(s)	298, 1030
BsmAI	GTCTC	2 cut(s)	359, 444
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	275, 718
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	72, 356, 1160
BsoBI	CYCGRG	2 cut(s)	292, 410
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
BspACI	CCGC	6 cut(s)	54, 299, 335, 338, 1105, 1246
BspANI	GGCC	3 cut(s)	72, 356, 1160
BspCNI	CTCAG	3 cut(s)	7, 967, 999
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	717, 1107
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	5 cut(s)	73, 90, 378, 384, 533
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	4 cut(s)	43, 401, 405, 556
BspT107I	GGYRCC	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	1122
BssAI	RCCGGY	1 cut(s)	1122
BssECI	CCNNGG	3 cut(s)	292, 357, 944
BssMI	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
BssNI	GRCGYC	2 cut(s)	178, 1021
Bst4CI	ACNGT	5 cut(s)	516, 606, 709, 730, 971
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	2 cut(s)	178, 1021
BstC8I	GCNNGC	2 cut(s)	1025, 1124
BstDEI	CTNAG	5 cut(s)	15, 237, 902, 975, 1007
BstF5I	GGATG	3 cut(s)	322, 687, 1085
BstFNI	CGCG	2 cut(s)	717, 1107
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	8 cut(s)	34, 51, 204, 400, 409, 564, 571, 628
BstMAI	GTCTC	2 cut(s)	359, 444
BstMBI	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 1033, 1145
BstNSI	RCATGY	2 cut(s)	662, 1201
BstSCI	CCNGG	4 cut(s)	21, 291, 292, 944
BstUI	CGCG	2 cut(s)	717, 1107
BstV1I	GCAGC	4 cut(s)	603, 784, 1037, 1148
BstX2I	RGATCY	3 cut(s)	48, 397, 561
BstYI	RGATCY	3 cut(s)	48, 397, 561
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	72, 356, 1160
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	322, 687, 1085
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	4 cut(s)	12, 175, 521, 526
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	1025, 1124
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	1 cut(s)	719
Cfr10I	RCCGGY	1 cut(s)	1122
Cfr13I	GGNCC	2 cut(s)	71, 89
Cfr9I	CCCGGG	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	2 cut(s)	167, 1029
Csp6I	GTAC	4 cut(s)	280, 972, 1011, 1195
CviAII	CATG	6 cut(s)	457, 652, 659, 931, 1059, 1198
CviQI	GTAC	4 cut(s)	280, 972, 1011, 1195
DdeI	CTNAG	5 cut(s)	15, 237, 902, 975, 1007
DpnI	GATC	8 cut(s)	33, 50, 203, 399, 408, 563, 570, 627
DpnII	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	1112
Eco88I	CYCGRG	2 cut(s)	292, 410
EcoICRI	GAGCTC	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	6 cut(s)	460, 655, 662, 934, 1062, 1201
FalI	AAGNNNNNCTT	4 cut(s)	972, 1004, 1132, 1164
FaqI	GGGAC	2 cut(s)	275, 718
FatI	CATG	6 cut(s)	456, 651, 658, 930, 1058, 1197
FauI	CCCGC	2 cut(s)	61, 1239
Fnu4HI	GCNGC	6 cut(s)	336, 339, 592, 773, 1051, 1137
FokI	GGATG	3 cut(s)	329, 674, 1072
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	6 cut(s)	336, 339, 592, 773, 1051, 1137
FspBI	CTAG	2 cut(s)	890, 1037
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	6 cut(s)	336, 339, 592, 773, 1051, 1137
HaeIII	GGCC	3 cut(s)	72, 356, 1160
HapII	CCGG	6 cut(s)	23, 293, 380, 386, 946, 1123
HgaI	GACGC	2 cut(s)	167, 1029
HhaI	GCGC	1 cut(s)	719
Hin1I	GRCGYC	2 cut(s)	178, 1021
Hin1II	CATG	6 cut(s)	460, 655, 662, 934, 1062, 1201
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	2 cut(s)	182, 1003
HindII	GTYRAC	2 cut(s)	182, 1003
HindIII	AAGCTT	3 cut(s)	986, 1146, 1205
HinfI	GANTC	3 cut(s)	149, 577, 1109
HpaII	CCGG	6 cut(s)	23, 293, 380, 386, 946, 1123
HphI	GGTGA	2 cut(s)	721, 1277
Hpy166II	GTNNAC	3 cut(s)	92, 182, 1003
Hpy188I	TCNGA	9 cut(s)	219, 352, 573, 616, 630, 726, 780, 1131, 1165
Hpy188III	TCNNGA	6 cut(s)	325, 404, 410, 586, 691, 931
Hpy8I	GTNNAC	3 cut(s)	92, 182, 1003
Hpy99I	CGWCG	2 cut(s)	554, 1023
HpyAV	CCTTC	4 cut(s)	163, 796, 821, 1126
HpyCH4III	ACNGT	5 cut(s)	516, 606, 709, 730, 971
HpyCH4V	TGCA	6 cut(s)	456, 519, 639, 687, 745, 1053
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 1033, 1145
HpyF3I	CTNAG	5 cut(s)	15, 237, 902, 975, 1007
Hsp92I	GRCGYC	2 cut(s)	178, 1021
Hsp92II	CATG	6 cut(s)	460, 655, 662, 934, 1062, 1201
HspAI	GCGC	1 cut(s)	717
KroI	GCCGGC	1 cut(s)	1122
KroNI	GCCGGC	1 cut(s)	1124
Kzo9I	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
LmnI	GCTCC	6 cut(s)	24, 370, 376, 382, 769, 917
Lsp1109I	GCAGC	4 cut(s)	603, 784, 1037, 1148
LweI	GCATC	4 cut(s)	130, 648, 696, 784
MaeI	CTAG	2 cut(s)	890, 1037
MalI	GATC	8 cut(s)	33, 50, 203, 399, 408, 563, 570, 627
MboI	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
MboII	GAAGA	7 cut(s)	148, 392, 571, 764, 767, 836, 875
MflI	RGATCY	3 cut(s)	48, 397, 561
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	595, 1014, 1077
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	129, 330
MroNI	GCCGGC	1 cut(s)	1122
MseI	TTAA	6 cut(s)	740, 797, 815, 854, 879, 1209
MslI	CAYNNNNRTG	1 cut(s)	780
MspI	CCGG	6 cut(s)	23, 293, 380, 386, 946, 1123
MspR9I	CCNGG	4 cut(s)	23, 293, 294, 946
Mva1269I	GAATGC	1 cut(s)	647
MvnI	CGCG	2 cut(s)	717, 1107
MwoI	GCNNNNNNNGC	3 cut(s)	473, 1033, 1145
NaeI	GCCGGC	1 cut(s)	1124
NciI	CCSGG	4 cut(s)	23, 293, 294, 946
NdeII	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
NgoMIV	GCCGGC	1 cut(s)	1122
NlaIII	CATG	6 cut(s)	460, 655, 662, 934, 1062, 1201
NlaIV	GGNNCC	5 cut(s)	73, 90, 378, 384, 533
NmeAIII	GCCGAG	1 cut(s)	382
NspI	RCATGY	2 cut(s)	662, 1201
PagI	TCATGA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	103
PciI	ACATGT	2 cut(s)	658, 1197
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	647
PdiI	GCCGGC	1 cut(s)	1124
PfeI	GAWTC	2 cut(s)	577, 1109
PkrI	GCNGC	6 cut(s)	337, 340, 593, 774, 1052, 1138
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PscI	ACATGT	2 cut(s)	658, 1197
Psp124BI	GAGCTC	1 cut(s)	21
PspN4I	GGNNCC	5 cut(s)	73, 90, 378, 384, 533
PspPI	GGNCC	2 cut(s)	71, 89
PsuI	RGATCY	3 cut(s)	48, 397, 561
PvuI	CGATCG	1 cut(s)	204
RsaI	GTAC	4 cut(s)	281, 973, 1012, 1196
RsaNI	GTAC	4 cut(s)	280, 972, 1011, 1195
RseI	CAYNNNNRTG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	6 cut(s)	740, 797, 815, 854, 879, 1209
SatI	GCNGC	6 cut(s)	336, 339, 592, 773, 1051, 1137
Sau3AI	GATC	8 cut(s)	31, 48, 201, 397, 406, 561, 568, 625
Sau96I	GGNCC	2 cut(s)	71, 89
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	4 cut(s)	23, 293, 294, 946
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	4 cut(s)	130, 648, 696, 784
SinI	GGWCC	1 cut(s)	89
SmaI	CCCGGG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	2 cut(s)	586, 1028
SmoI	CTYRAG	2 cut(s)	586, 1028
Sse9I	AATT	3 cut(s)	595, 1014, 1077
SsiI	CCGC	6 cut(s)	54, 299, 335, 338, 1105, 1246
SspI	AATATT	2 cut(s)	1045, 1116
SspMI	CTAG	2 cut(s)	890, 1037
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	4 cut(s)	21, 291, 292, 944
TaaI	ACNGT	5 cut(s)	516, 606, 709, 730, 971
TaqI	TCGA	7 cut(s)	34, 138, 200, 324, 567, 642, 1018
TasI	AATT	3 cut(s)	595, 1014, 1077
TatI	WGTACW	1 cut(s)	1010
TauI	GCSGC	2 cut(s)	338, 341
TfiI	GAWTC	2 cut(s)	577, 1109
Tru1I	TTAA	6 cut(s)	740, 797, 815, 854, 879, 1209
Tru9I	TTAA	6 cut(s)	740, 797, 815, 854, 879, 1209
TscAI	CASTG	4 cut(s)	19, 175, 521, 526
TseI	GCWGC	4 cut(s)	591, 772, 1050, 1136
TspDTI	ATGAA	7 cut(s)	78, 148, 333, 640, 1047, 1074, 1089
TspGWI	ACGGA	3 cut(s)	218, 236, 383
TspMI	CCCGGG	1 cut(s)	292
TspRI	CASTG	4 cut(s)	19, 175, 521, 526
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	2 cut(s)	662, 1201
XmaI	CCCGGG	1 cut(s)	292
XspI	CTAG	2 cut(s)	890, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.