Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005329.1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

59242 .. 60096

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005329.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgactaaagaccaaaaggcatatcggagagtcatcaaagaaagagagatgaggaaaatatacaacttgcctccgccggaggccaaacacctgtttacctatctccaacagctcggggtgaggaccgatcttgacgcttattctcaggaaaaggctatcgatgctaccgactccttcttcaaacaagtcagtgattggcgtcaacctacgataatcggttcgatcgcctttactattctgacggaactccggaaatctaaagagataaacgaggagattattagaaaagttgttcagttctacccaaacgtcccgggtgcggaggaggaggaggaggaggaggatgaaatcgagaagttggcggcggctttagggtcggaggccgagcaggagccggaggttgaggatcttcctgatcccgagtgtgatgattttgattttgatttagtacgagactgcatggataggacaaaggaggcagaaccgacagaacaagacaggaaagagttgttgaaacagtgcagtgaaatggggtgcagattgaaacaaggccacgagcagaagatcctcgatctgatgattcctttcttgagcagcaattttacacgattttcatctgatataactgatcggacaatctgcatcgaagcattcatggaacatgtccaagattatatcaatcgttcttgcatcctgaacgacttggggacggtgaaccgcgccattcagactgtgaataagttaatgcaagtagaagacgattggaaaaaggagcagcatcagagtgtcagaagaatggtacgtacttcatcttgcttcgatcccacattagggcatctccaacagactagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

33.12

Weight (kDa)

4.78

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	720
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	5 cut(s)	74, 320, 362, 365, 718
AclWI	GGATC	4 cut(s)	410, 414, 559, 815
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	3 cut(s)	450, 801, 805
AfiI	CCNNNNNNNGG	3 cut(s)	319, 830, 831
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	3 cut(s)	181, 514, 544
AhlI	ACTAGT	1 cut(s)	848
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	4 cut(s)	410, 414, 559, 815
Ama87I	CYCGRG	3 cut(s)	113, 313, 419
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	3 cut(s)	81, 381, 550
ApeKI	GCWGC	2 cut(s)	594, 775
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	2 cut(s)	314, 315
AsuHPI	GGTGA	2 cut(s)	130, 724
AvaI	CYCGRG	3 cut(s)	113, 313, 419
AvaII	GGWCC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	2 cut(s)	606, 787
BcnI	CCSGG	2 cut(s)	314, 315
BcoDI	GTCTC	1 cut(s)	447
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	1 cut(s)	849
BisI	GCNGC	4 cut(s)	363, 366, 595, 776
BlsI	GCNGC	4 cut(s)	364, 367, 596, 777
Bme1390I	CCNGG	2 cut(s)	314, 315
Bme18I	GGWCC	1 cut(s)	123
BmeT110I	CYCGRG	3 cut(s)	113, 313, 419
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	314, 315
BmsI	GCATC	5 cut(s)	151, 651, 699, 787, 844
BpiI	GAAGAC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	314, 315
Bsa29I	ATCGAT	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	613
BsaHI	GRCGYC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 830, 831
Bse8I	GATNNNNATC	1 cut(s)	613
BseAI	TCCGGA	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	349, 690
BseJI	GATNNNNATC	1 cut(s)	613
BseLI	CCNNNNNNNGG	3 cut(s)	319, 830, 831
BseMII	CTCAG	1 cut(s)	158
BseRI	GAGGAG	7 cut(s)	287, 338, 341, 344, 347, 350, 353
BseXI	GCAGC	2 cut(s)	606, 787
BsgI	GTGCAG	2 cut(s)	541, 556
Bsh1236I	CGCG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	83, 383, 552
BshVI	ATCGAT	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	225
BsiHKCI	CYCGRG	3 cut(s)	113, 313, 419
BsiSI	CCGG	4 cut(s)	77, 250, 314, 395
BslFI	GGGAC	2 cut(s)	296, 721
BslI	CCNNNNNNNGG	3 cut(s)	319, 830, 831
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	296, 721
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	83, 383, 552
BsoBI	CYCGRG	3 cut(s)	113, 313, 419
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
BspACI	CCGC	5 cut(s)	74, 320, 362, 365, 718
BspANI	GGCC	3 cut(s)	83, 383, 552
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	159
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	4 cut(s)	410, 414, 559, 815
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
BssNI	GRCGYC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst4CI	ACNGT	3 cut(s)	519, 712, 733
BstACI	GRCGYC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	803
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	349, 690
BstFNI	CGCG	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	8 cut(s)	130, 225, 409, 418, 567, 574, 631, 823
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	312, 313
BstSNI	TACGTA	1 cut(s)	803
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	606, 787
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	2 cut(s)	406, 564
BstYI	RGATCY	2 cut(s)	406, 564
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	83, 383, 552
BsuTUI	ATCGAT	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	349, 690
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	3 cut(s)	196, 524, 529
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	123
Cfr9I	CCCGGG	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	2 cut(s)	143, 188
Csp6I	GTAC	3 cut(s)	449, 800, 804
CviAII	CATG	3 cut(s)	460, 655, 662
CviJI	RGCY	7 cut(s)	83, 112, 155, 368, 383, 394, 552
CviKI_1	RGCY	7 cut(s)	83, 112, 155, 368, 383, 394, 552
CviQI	GTAC	3 cut(s)	449, 800, 804
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	8 cut(s)	129, 224, 408, 417, 566, 573, 630, 822
DpnII	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
EciI	GGCGGA	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	123
Eco88I	CYCGRG	3 cut(s)	113, 313, 419
FaeI	CATG	3 cut(s)	463, 658, 665
FaiI	YATR	7 cut(s)	22, 61, 461, 623, 656, 663, 675
FaqI	GGGAC	2 cut(s)	296, 721
FatI	CATG	3 cut(s)	459, 654, 661
Fnu4HI	GCNGC	4 cut(s)	363, 366, 595, 776
FokI	GGATG	2 cut(s)	356, 677
Fsp4HI	GCNGC	4 cut(s)	363, 366, 595, 776
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	4 cut(s)	363, 366, 595, 776
HaeIII	GGCC	3 cut(s)	83, 383, 552
HapII	CCGG	4 cut(s)	77, 250, 314, 395
HgaI	GACGC	2 cut(s)	143, 188
HhaI	GCGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	463, 658, 665
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	30, 170, 580
HpaII	CCGG	4 cut(s)	77, 250, 314, 395
HphI	GGTGA	2 cut(s)	130, 724
Hpy166II	GTNNAC	3 cut(s)	96, 203, 715
Hpy188I	TCNGA	9 cut(s)	27, 240, 379, 576, 619, 633, 729, 783, 791
Hpy188III	TCNNGA	8 cut(s)	131, 146, 250, 352, 413, 419, 589, 694
Hpy8I	GTNNAC	3 cut(s)	96, 203, 715
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	519, 712, 733
HpyCH4IV	ACGT	2 cut(s)	309, 802
HpyCH4V	TGCA	6 cut(s)	459, 522, 537, 642, 690, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	2 cut(s)	309, 802
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	463, 658, 665
HspAI	GCGC	1 cut(s)	720
Kpn2I	TCCGGA	1 cut(s)	249
Kzo9I	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
LmnI	GCTCC	2 cut(s)	391, 772
Lsp1109I	GCAGC	2 cut(s)	606, 787
LweI	GCATC	5 cut(s)	151, 651, 699, 787, 844
MaeI	CTAG	1 cut(s)	849
MaeII	ACGT	2 cut(s)	309, 802
MalI	GATC	8 cut(s)	129, 224, 408, 417, 566, 573, 630, 822
MboI	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
MboII	GAAGA	5 cut(s)	169, 401, 574, 767, 804
MflI	RGATCY	2 cut(s)	406, 564
MluCI	AATT	1 cut(s)	598
MlyI	GAGTC	2 cut(s)	39, 164
MmeI	TCCRAC	2 cut(s)	130, 357
MroI	TCCGGA	1 cut(s)	249
MseI	TTAA	2 cut(s)	743, 853
MslI	CAYNNNNRTG	1 cut(s)	783
MspI	CCGG	4 cut(s)	77, 250, 314, 395
MspR9I	CCNGG	2 cut(s)	314, 315
Mva1269I	GAATGC	1 cut(s)	650
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	2 cut(s)	314, 315
NdeII	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
NlaIII	CATG	3 cut(s)	463, 658, 665
NlaIV	GGNNCC	1 cut(s)	393
NmeAIII	GCCGAG	1 cut(s)	409
NspI	RCATGY	1 cut(s)	665
PciI	ACATGT	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	364, 367, 596, 777
Ple19I	CGATCG	1 cut(s)	225
PleI	GAGTC	2 cut(s)	38, 164
PpsI	GAGTC	2 cut(s)	38, 164
Ppu21I	YACGTR	1 cut(s)	803
PscI	ACATGT	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	406, 564
PvuI	CGATCG	1 cut(s)	225
RsaI	GTAC	3 cut(s)	450, 801, 805
RsaNI	GTAC	3 cut(s)	449, 800, 804
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	2 cut(s)	743, 853
SatI	GCNGC	4 cut(s)	363, 366, 595, 776
Sau3AI	GATC	8 cut(s)	127, 222, 406, 415, 564, 571, 628, 820
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	2 cut(s)	39, 164
ScrFI	CCNGG	2 cut(s)	314, 315
SetI	ASST	7 cut(s)	93, 101, 114, 208, 312, 402, 805
SfaNI	GCATC	5 cut(s)	151, 651, 699, 787, 844
SinI	GGWCC	1 cut(s)	123
SmaI	CCCGGG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SnaBI	TACGTA	1 cut(s)	803
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	1 cut(s)	598
SsiI	CCGC	5 cut(s)	74, 320, 362, 365, 718
SspMI	CTAG	1 cut(s)	849
StyD4I	CCNGG	2 cut(s)	312, 313
TaaI	ACNGT	3 cut(s)	519, 712, 733
TaiI	ACGT	2 cut(s)	312, 805
TaqI	TCGA	6 cut(s)	159, 221, 351, 570, 645, 819
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	598
TauI	GCSGC	2 cut(s)	365, 368
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	743, 853
Tru9I	TTAA	2 cut(s)	743, 853
TscAI	CASTG	3 cut(s)	196, 524, 529
TseI	GCWGC	2 cut(s)	594, 775
TspDTI	ATGAA	4 cut(s)	360, 603, 643, 798
TspGWI	ACGGA	1 cut(s)	257
TspMI	CCCGGG	1 cut(s)	313
TspRI	CASTG	3 cut(s)	196, 524, 529
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	665
XmaI	CCCGGG	1 cut(s)	313
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.