Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

65357235 .. 65375298

Gene Structure 18064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTGCGAAGATACTTGTATCCGGCGGGGTCCGAACACCTGTTTTTCTATCTCGAACAGCTCGGGGTGAGGATCCATCTTAACGTTTTTGATCAGGAAAAGGCTATCAATGCTACCGACTCCTTGGTCAAAAAACTCACTGATTGGCGTCGACCGATGACGATCGATTCCATCGCCTTGGCTACGAGAGAACTCCTTAAACCTAAGGAGATAAACGAGGAGATTATTGAAAAAGTTATTCAGTTCTACCCGAACGTCCCGGGCGCGGCGGAGAAGAACAAGGAGGATGAAGACGAGAAGTTGACGGCGATGTTAGGGCCGGAGGCCGAGGAGGAGGAGGAGACAGAGTGTGATGATTTAGATTTTCATGTAAAGTACCTGAAGAAGTGGGCCATGGAGAGGGCCATGCAGAAGGTAAAGGAGTTAGAACCCACAGAACAAGACAGGATGGAGTTGTTGAAACATTGCAGGGAAATCGGATGCAGTTTGAAACAAGACCAAGCCCAGAAGATCCTCAATATGATGATTTCTTTCTTAAGCAATTCTGAGTTTTTTACACGATTCTCACCTTATAAAACTGATAGGAGAATCTGCATCAAAATTTTCATGGAAAAGGTCCGAGCCTATCTCGAGCGTTCTTGCATCCTGAACGACTTGGGGACGGTGTACCGCGCCATTGAGACTGTCAAGTCAATAGAAGAAGAAGAAGAATTGAAAATGGAGCGGCAGCGTGTCAGCACAATGCTAAGGCTTTTAAAGAAGAATATGGTACCAACTAAAGACCAAGGGATTGCTAGCCCCATGTGCCTCTTAAAACTAAAAGAGAAAAGAGAACATGGAGATATGGAGCTTGACCAATCCAGAGAAAGAAAATATGTGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

34.89

Weight (kDa)

5.67

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AasI	GACNNNNNNGTC	2 cut(s)	125, 688
Acc65I	GGTACC	1 cut(s)	769
AccB1I	GGYRCC	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	151
AccII	CGCG	2 cut(s)	266, 672
AciI	CCGC	5 cut(s)	26, 266, 269, 670, 724
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	3 cut(s)	67, 80, 505
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	377, 668, 771
AfiI	CCNNNNNNNGG	2 cut(s)	265, 399
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	4 cut(s)	230, 460, 490, 715
AluBI	AGCT	2 cut(s)	61, 850
AluI	AGCT	2 cut(s)	61, 850
Alw26I	GTCTC	2 cut(s)	335, 674
AlwI	GGATC	3 cut(s)	67, 80, 505
Ama87I	CYCGRG	3 cut(s)	62, 259, 629
AoxI	GGCC	4 cut(s)	317, 324, 390, 402
ApeKI	GCWGC	1 cut(s)	727
ApoI	RAATTY	1 cut(s)	600
Asp718I	GGTACC	1 cut(s)	769
AspLEI	GCGC	2 cut(s)	266, 674
AspS9I	GGNCC	5 cut(s)	30, 317, 390, 402, 616
AsuC2I	CCSGG	2 cut(s)	260, 261
AsuHPI	GGTGA	2 cut(s)	79, 558
AsuNHI	GCTAGC	1 cut(s)	794
AvaI	CYCGRG	3 cut(s)	62, 259, 629
AvaII	GGWCC	2 cut(s)	30, 616
AxyI	CCTNAGG	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	769
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	3 cut(s)	84, 179, 442
BceAI	ACGGC	1 cut(s)	321
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciVI	GTATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	260, 261
BcoDI	GTCTC	2 cut(s)	335, 674
BfaI	CTAG	1 cut(s)	795
BfrI	CTTAAG	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	267, 725, 728
BlsI	GCNGC	3 cut(s)	268, 726, 729
Bme1390I	CCNGG	2 cut(s)	260, 261
Bme18I	GGWCC	2 cut(s)	30, 616
BmeT110I	CYCGRG	3 cut(s)	62, 259, 629
BmgT120I	GGNCC	5 cut(s)	30, 317, 390, 402, 616
BmiI	GGNNCC	3 cut(s)	31, 74, 771
BmrFI	CCNGG	2 cut(s)	260, 261
BmsI	GCATC	3 cut(s)	470, 603, 651
BmtI	GCTAGC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	612, 644
Bpu10I	CCTNAGC	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	260, 261
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	6 cut(s)	123, 177, 259, 327, 393, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 399
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	6 cut(s)	123, 177, 259, 327, 393, 784
BseGI	GGATG	4 cut(s)	292, 453, 485, 642
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	265, 399
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	1 cut(s)	537
BseRI	GAGGAG	5 cut(s)	233, 344, 347, 350, 353
BseXI	GCAGC	1 cut(s)	739
Bsh1236I	CGCG	2 cut(s)	266, 672
Bsh1285I	CGRYCG	2 cut(s)	155, 165
BshFI	GGCC	4 cut(s)	319, 326, 392, 404
BshNI	GGYRCC	1 cut(s)	769
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	2 cut(s)	155, 165
BsiHKCI	CYCGRG	3 cut(s)	62, 259, 629
BsiSI	CCGG	3 cut(s)	23, 260, 320
BslFI	GGGAC	2 cut(s)	242, 673
BslI	CCNNNNNNNGG	2 cut(s)	265, 399
BsmAI	GTCTC	2 cut(s)	335, 674
BsmFI	GGGAC	2 cut(s)	242, 673
BsnI	GGCC	4 cut(s)	319, 326, 392, 404
BsoBI	CYCGRG	3 cut(s)	62, 259, 629
Bsp143I	GATC	4 cut(s)	72, 91, 162, 510
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	5 cut(s)	26, 266, 269, 670, 724
BspANI	GGCC	4 cut(s)	319, 326, 392, 404
BspCNI	CTCAG	1 cut(s)	538
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	2 cut(s)	266, 672
BspLI	GGNNCC	3 cut(s)	31, 74, 771
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	3 cut(s)	67, 80, 505
BspT107I	GGYRCC	1 cut(s)	769
BspTI	CTTAAG	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	463
BssECI	CCNNGG	6 cut(s)	123, 177, 259, 327, 393, 784
BssMI	GATC	4 cut(s)	72, 91, 162, 510
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	4 cut(s)	123, 177, 393, 784
Bst4CI	ACNGT	2 cut(s)	664, 685
BstACI	GRCGYC	1 cut(s)	148
BstAFI	CTTAAG	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	3 cut(s)	204, 546, 746
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	4 cut(s)	292, 453, 485, 642
BstFNI	CGCG	2 cut(s)	266, 672
BstHHI	GCGC	2 cut(s)	266, 674
BstKTI	GATC	4 cut(s)	75, 94, 165, 513
BstMAI	GTCTC	2 cut(s)	335, 674
BstMBI	GATC	4 cut(s)	72, 91, 162, 510
BstMCI	CGRYCG	2 cut(s)	155, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 804
BstSCI	CCNGG	2 cut(s)	258, 259
BstUI	CGCG	2 cut(s)	266, 672
BstV1I	GCAGC	1 cut(s)	739
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	72, 510
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	2 cut(s)	72, 510
Bsu15I	ATCGAT	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	319, 326, 392, 404
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	2 cut(s)	157, 323
BtsCI	GGATG	4 cut(s)	292, 453, 485, 642
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	796
CfoI	GCGC	2 cut(s)	266, 674
Cfr13I	GGNCC	5 cut(s)	30, 317, 390, 402, 616
Cfr9I	CCCGGG	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	376, 667, 770
CviAII	CATG	6 cut(s)	368, 394, 406, 607, 802, 836
CviQI	GTAC	3 cut(s)	376, 667, 770
DdeI	CTNAG	3 cut(s)	204, 546, 746
DpnI	GATC	4 cut(s)	74, 93, 164, 512
DpnII	GATC	4 cut(s)	72, 91, 162, 510
DraI	TTTAAA	1 cut(s)	756
DrdI	GACNNNNNNGTC	2 cut(s)	125, 688
DseDI	GACNNNNNNGTC	2 cut(s)	125, 688
EciI	GGCGGA	1 cut(s)	284
Eco130I	CCWWGG	4 cut(s)	123, 177, 393, 784
Eco47I	GGWCC	2 cut(s)	30, 616
Eco57I	CTGAAG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	3 cut(s)	62, 259, 629
EcoT14I	CCWWGG	4 cut(s)	123, 177, 393, 784
ErhI	CCWWGG	4 cut(s)	123, 177, 393, 784
FaeI	CATG	6 cut(s)	371, 397, 409, 610, 805, 839
FaqI	GGGAC	2 cut(s)	242, 673
FatI	CATG	6 cut(s)	367, 393, 405, 606, 801, 835
FauI	CCCGC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	267, 725, 728
FokI	GGATG	4 cut(s)	299, 460, 492, 629
Fsp4HI	GCNGC	3 cut(s)	267, 725, 728
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	2 cut(s)	265, 673
GluI	GCNGC	3 cut(s)	267, 725, 728
HaeIII	GGCC	4 cut(s)	319, 326, 392, 404
HapII	CCGG	3 cut(s)	23, 260, 320
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	266, 674
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	6 cut(s)	371, 397, 409, 610, 805, 839
Hin6I	GCGC	2 cut(s)	264, 672
HinP1I	GCGC	2 cut(s)	264, 672
HincII	GTYRAC	2 cut(s)	152, 303
HindII	GTYRAC	2 cut(s)	152, 303
HinfI	GANTC	4 cut(s)	119, 167, 561, 588
HpaII	CCGG	3 cut(s)	23, 260, 320
HphI	GGTGA	2 cut(s)	79, 558
Hpy166II	GTNNAC	3 cut(s)	152, 303, 667
Hpy188I	TCNGA	4 cut(s)	34, 479, 547, 620
Hpy188III	TCNNGA	5 cut(s)	53, 95, 629, 646, 861
Hpy8I	GTNNAC	3 cut(s)	152, 303, 667
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	664, 685
HpyCH4IV	ACGT	2 cut(s)	84, 255
HpyCH4V	TGCA	5 cut(s)	409, 468, 483, 594, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 804
HpyF3I	CTNAG	3 cut(s)	204, 546, 746
HpySE526I	ACGT	2 cut(s)	84, 255
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	6 cut(s)	371, 397, 409, 610, 805, 839
HspAI	GCGC	2 cut(s)	264, 672
KpnI	GGTACC	1 cut(s)	773
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	72, 91, 162, 510
LmnI	GCTCC	2 cut(s)	721, 847
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	3 cut(s)	470, 603, 651
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	2 cut(s)	84, 255
MalI	GATC	4 cut(s)	74, 93, 164, 512
MbiI	CCGCTC	1 cut(s)	724
MboI	GATC	4 cut(s)	72, 91, 162, 510
MflI	RGATCY	2 cut(s)	72, 510
MluCI	AATT	3 cut(s)	541, 600, 710
MlyI	GAGTC	1 cut(s)	113
MseI	TTAA	6 cut(s)	81, 198, 536, 755, 812, 886
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	3 cut(s)	23, 260, 320
MspR9I	CCNGG	2 cut(s)	260, 261
MvnI	CGCG	2 cut(s)	266, 672
MwoI	GCNNNNNNNGC	2 cut(s)	110, 804
NciI	CCSGG	2 cut(s)	260, 261
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	4 cut(s)	72, 91, 162, 510
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	6 cut(s)	371, 397, 409, 610, 805, 839
NlaIV	GGNNCC	3 cut(s)	31, 74, 771
NmeAIII	GCCGAG	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	167, 561, 588
PkrI	GCNGC	3 cut(s)	268, 726, 729
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	573
Psp1406I	AACGTT	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	31, 74, 771
PspPI	GGNCC	5 cut(s)	30, 317, 390, 402, 616
PsuI	RGATCY	2 cut(s)	72, 510
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	3 cut(s)	377, 668, 771
RsaNI	GTAC	3 cut(s)	376, 667, 770
SalI	GTCGAC	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	81, 198, 536, 755, 812, 886
SatI	GCNGC	3 cut(s)	267, 725, 728
Sau3AI	GATC	4 cut(s)	72, 91, 162, 510
Sau96I	GGNCC	5 cut(s)	30, 317, 390, 402, 616
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	260, 261
SfaNI	GCATC	3 cut(s)	470, 603, 651
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	2 cut(s)	30, 616
SlaI	CTCGAG	1 cut(s)	629
SmaI	CCCGGG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	535, 629
SmoI	CTYRAG	2 cut(s)	535, 629
Sse9I	AATT	3 cut(s)	541, 600, 710
SsiI	CCGC	5 cut(s)	26, 266, 269, 670, 724
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	2 cut(s)	258, 259
StyI	CCWWGG	4 cut(s)	123, 177, 393, 784
TaaI	ACNGT	2 cut(s)	664, 685
TaiI	ACGT	2 cut(s)	87, 258
TaqI	TCGA	4 cut(s)	54, 151, 165, 630
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	3 cut(s)	541, 600, 710
TauI	GCSGC	2 cut(s)	269, 727
TfiI	GAWTC	3 cut(s)	167, 561, 588
Tru1I	TTAA	6 cut(s)	81, 198, 536, 755, 812, 886
Tru9I	TTAA	6 cut(s)	81, 198, 536, 755, 812, 886
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	303, 356, 595
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	535
VpaK11BI	GGWCC	2 cut(s)	30, 616
XapI	RAATTY	1 cut(s)	600
XhoI	CTCGAG	1 cut(s)	629
XmaI	CCCGGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.