FvH4_6g40845

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001839
Physical Location & Seq
Forward (+)
32272720 .. 32273109
390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40845.t1

Sequence Viewer

Length: 324 bp
ATGAGGTCGGAGGCTGGAGAGGTCGCCGGTCTGAGGTCGTCGGTCGGAGCTGGAGGCTGGGTTCGGCTTGTGGTCGCTGGGTTCAACTTTTCTCACTCTGGGAACTATTTGGGAAGAATGGGAAGAATGAGAGAAGTGCGGCTCCCTCTAGCTCTCTGTGTTAGAAATGGTCAACGTGTCGCAACCGTGTCGAAAAAGTTTGACTTTTCGGACACACCACGTGGCGTGTCGGACGCCGTGTCGGGCCGTGTCGGTACGTATCGGCGTGTCGGGGAGCGTCCGACGCTCCGACACTCCATGGTTAGAGGTGTCCGTGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.62

Weight (kDa)

11.74

Isoelectric Point (pI)

22.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcvI CACGTG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 1 cut(s) 85
AhdI GACNNNNNGTC 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 45, 77
AluBI AGCT 2 cut(s) 50, 152
AluI AGCT 2 cut(s) 50, 152
AoxI GGCC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 244
BbrPI CACGTG 1 cut(s) 221
BceAI ACGGC 2 cut(s) 221, 231
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BfaI CTAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmeRI GACNNNNNGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 143
BpmI CTGGAG 2 cut(s) 36, 72
BsaAI YACGTR 2 cut(s) 221, 258
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 23
BseYI CCCAGC 2 cut(s) 57, 77
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 33
BsnI GGCC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 234
BstBAI YACGTR 2 cut(s) 221, 258
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 297
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstSNI TACGTA 1 cut(s) 258
BsuRI GGCC 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 3 cut(s) 242, 266, 292
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 298
CviJI RGCY 7 cut(s) 14, 50, 57, 67, 142, 152, 246
CviKI_1 RGCY 7 cut(s) 14, 50, 57, 67, 142, 152, 246
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 32
DraIII CACNNNGTG 1 cut(s) 221
DriI GACNNNNNGTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 238
Eco105I TACGTA 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 297
Eco72I CACGTG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 301
FaiI YATR 2 cut(s) 299, 322
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 140
GsaI CCCAGC 2 cut(s) 61, 81
GsuI CTGGAG 2 cut(s) 36, 72
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 27
HgaI GACGC 3 cut(s) 242, 266, 292
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 7 cut(s) 10, 33, 47, 211, 232, 282, 290
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 2 cut(s) 43, 286
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 3 cut(s) 175, 220, 257
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 3 cut(s) 175, 220, 257
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 1 cut(s) 301
LmnI GCTCC 4 cut(s) 47, 147, 274, 291
LpnPI CCDG 5 cut(s) 36, 40, 43, 63, 84
MaeI CTAG 1 cut(s) 149
MaeII ACGT 3 cut(s) 175, 220, 257
MboII GAAGA 2 cut(s) 126, 135
MmeI TCCRAC 4 cut(s) 25, 210, 305, 313
MnlI CCTC 6 cut(s) 4, 13, 27, 47, 156, 299
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 283
NcoI CCATGG 1 cut(s) 297
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
Ppu21I YACGTR 2 cut(s) 221, 258
PspCI CACGTG 1 cut(s) 221
PspFI CCCAGC 2 cut(s) 57, 77
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 244
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SatI GCNGC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 244
SetI ASST 9 cut(s) 8, 24, 38, 52, 154, 178, 223, 260, 310
SnaBI TACGTA 1 cut(s) 258
SsiI CCGC 1 cut(s) 139
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 3 cut(s) 178, 223, 260
TaqI TCGA 1 cut(s) 191
TaqII GACCGA 1 cut(s) 31
TauI GCSGC 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 302
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.