Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

1703924 .. 1708333

Gene Structure 4410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTACGAAGATACTTGTATCCGGCGGAGGCTAAACACCTGTTCTTCTATCTCGAACAGCTCGGGGTGAGGATCCATCTTAACGTTTCTGATCAGGAAAAGGCTGTCGTTGCTACCGACTCCTTCATCAAAAAAATGAGTCATTGGCCTCAACCTATGATGATCGATTCCATCGCCCTGGCTACGAGGGAACTCCTTAAACCTAAGGAGATAAACGAGGAGATTATTGACAAAGTTATTGAGTTCTACCCAAACGTCCCGGGGGCGGCGGAGAAGGAAGAGGAGGATGAAGACGAGAAGTTGACGGCGCTGTTAGGGTCGGAGGCCGGGGATGAGGAGGAGGAGGAGGTTGAGGATCCCGAGTGGGATGATTTATATTTTCAAGACAAGAAGAAGAGGGCCATGGAGAAGGCAAAGGTTGCAGAACCGACAGAAGAAGACATGATGGAGTTGTTGAAATATTGCAGTGAAATGGGATGCAGTTTGAAACAATGCCAAGACCAGAACATCCTCAATCGGATGATTTCTTTCATAAGCAATTCTGATTGTTTTACAGGATTCTCATCTGATGAATATGATAGGAGCGTCTGCATCAAAATTTTCATGGAAAAGGTCGACGCCTATCTCTTGAGTTGTTGCACCCTCACCGACTTTGGGACGGTGAACTGCGCCATTGAGACGGTGGAGTCAGAGGACAAAAAAGAACAAGAAGATTTGCAAAAGATGCGGGCGAGCAGAGCCAGCAGAATGTTAAAGAAGAATATCATACCAACTAAAGAACAAGGGATTGCTACCCCCATATGCCACTTAAAACTAGAAGAGAAAAGAGAATGTGGAGATATGGAACTTGACGAATCCAGAGAAAGAAATTATGTGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

34.06

Weight (kDa)

4.62

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	615
AciI	CCGC	4 cut(s)	26, 266, 269, 727
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	4 cut(s)	67, 80, 350, 363
AcsI	RAATTY	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	265, 654
AgsI	TTSAA	3 cut(s)	383, 457, 487
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	4 cut(s)	67, 80, 350, 363
Ama87I	CYCGRG	3 cut(s)	62, 259, 359
AoxI	GGCC	3 cut(s)	146, 324, 399
ApoI	RAATTY	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	310, 671
AspS9I	GGNCC	1 cut(s)	399
AsuC2I	CCSGG	3 cut(s)	260, 261, 328
AsuHPI	GGTGA	3 cut(s)	79, 637, 673
AvaI	CYCGRG	3 cut(s)	62, 259, 359
AxyI	CCTNAGG	1 cut(s)	204
BamHI	GGATCC	2 cut(s)	72, 355
BbsI	GAAGAC	2 cut(s)	297, 444
BccI	CCATC	3 cut(s)	84, 179, 439
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	3 cut(s)	260, 261, 328
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	1 cut(s)	815
BfoI	RGCGCY	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	4 cut(s)	179, 260, 261, 328
BmeT110I	CYCGRG	3 cut(s)	62, 259, 359
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	74, 357
BmrFI	CCNGG	4 cut(s)	179, 260, 261, 328
BmsI	GCATC	3 cut(s)	467, 600, 714
BpiI	GAAGAC	2 cut(s)	297, 444
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	3 cut(s)	260, 261, 328
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	5 cut(s)	177, 259, 260, 327, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 654
Bse21I	CCTNAGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	5 cut(s)	177, 259, 260, 327, 402
BseGI	GGATG	6 cut(s)	292, 337, 373, 482, 507, 525
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	265, 654
BseRI	GAGGAG	6 cut(s)	233, 296, 350, 353, 356, 359
BshFI	GGCC	3 cut(s)	148, 326, 401
BshVI	ATCGAT	1 cut(s)	165
BsiHKCI	CYCGRG	3 cut(s)	62, 259, 359
BsiSI	CCGG	3 cut(s)	23, 260, 327
BslFI	GGGAC	2 cut(s)	242, 670
BslI	CCNNNNNNNGG	2 cut(s)	265, 654
BsmAI	GTCTC	1 cut(s)	671
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	2 cut(s)	242, 670
BsnI	GGCC	3 cut(s)	148, 326, 401
BsoBI	CYCGRG	3 cut(s)	62, 259, 359
Bsp143I	GATC	4 cut(s)	72, 91, 162, 355
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	4 cut(s)	26, 266, 269, 727
BspANI	GGCC	3 cut(s)	148, 326, 401
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	74, 357
BspPI	GGATC	4 cut(s)	67, 80, 350, 363
BssECI	CCNNGG	5 cut(s)	177, 259, 260, 327, 402
BssMI	GATC	4 cut(s)	72, 91, 162, 355
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	661, 682
Bst6I	CTCTTC	3 cut(s)	273, 389, 813
BstACI	GRCGYC	1 cut(s)	618
BstAPI	GCANNNNNTGC	2 cut(s)	419, 724
BstC8I	GCNNGC	3 cut(s)	729, 733, 742
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	6 cut(s)	292, 337, 373, 482, 507, 525
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 671
BstKTI	GATC	4 cut(s)	75, 94, 165, 358
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	4 cut(s)	72, 91, 162, 355
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 419, 724, 737, 741
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	177, 258, 259, 326
BstV2I	GAAGAC	2 cut(s)	297, 444
BstX2I	RGATCY	2 cut(s)	72, 355
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	2 cut(s)	72, 355
Bsu15I	ATCGAT	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	148, 326, 401
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	6 cut(s)	292, 337, 373, 482, 507, 525
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	729, 733, 742
CfoI	GCGC	2 cut(s)	310, 671
Cfr13I	GGNCC	1 cut(s)	399
Cfr9I	CCCGGG	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	2 cut(s)	574, 626
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	3 cut(s)	403, 442, 604
CviJI	RGCY	8 cut(s)	32, 61, 104, 148, 182, 326, 401, 740
CviKI_1	RGCY	8 cut(s)	32, 61, 104, 148, 182, 326, 401, 740
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	74, 93, 164, 357
DpnII	GATC	4 cut(s)	72, 91, 162, 355
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
Eam1104I	CTCTTC	3 cut(s)	273, 389, 813
EarI	CTCTTC	3 cut(s)	273, 389, 813
EciI	GGCGGA	2 cut(s)	41, 284
Eco130I	CCWWGG	1 cut(s)	402
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	3 cut(s)	62, 259, 359
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	3 cut(s)	406, 445, 607
FaqI	GGGAC	2 cut(s)	242, 670
FatI	CATG	3 cut(s)	402, 441, 603
FauI	CCCGC	1 cut(s)	720
FauNDI	CATATG	1 cut(s)	800
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	6 cut(s)	299, 344, 380, 489, 494, 532
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	815
GlaI	GCGC	2 cut(s)	309, 670
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	148, 326, 401
HapII	CCGG	3 cut(s)	23, 260, 327
HgaI	GACGC	2 cut(s)	574, 626
HhaI	GCGC	2 cut(s)	310, 671
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	3 cut(s)	406, 445, 607
Hin6I	GCGC	2 cut(s)	308, 669
HinP1I	GCGC	2 cut(s)	308, 669
HincII	GTYRAC	2 cut(s)	303, 616
HindII	GTYRAC	2 cut(s)	303, 616
HinfI	GANTC	6 cut(s)	119, 139, 167, 558, 686, 854
HpaII	CCGG	3 cut(s)	23, 260, 327
HphI	GGTGA	3 cut(s)	79, 637, 673
Hpy166II	GTNNAC	3 cut(s)	303, 616, 664
Hpy188I	TCNGA	6 cut(s)	91, 322, 519, 544, 568, 691
Hpy188III	TCNNGA	6 cut(s)	53, 95, 359, 383, 628, 858
Hpy8I	GTNNAC	3 cut(s)	303, 616, 664
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	3 cut(s)	133, 268, 403
HpyCH4III	ACNGT	2 cut(s)	661, 682
HpyCH4IV	ACGT	2 cut(s)	84, 255
HpyCH4V	TGCA	6 cut(s)	422, 465, 480, 591, 639, 718
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 419, 724, 737, 741
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	84, 255
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	406, 445, 607
HspAI	GCGC	2 cut(s)	308, 669
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	72, 91, 162, 355
LmnI	GCTCC	1 cut(s)	582
LweI	GCATC	3 cut(s)	467, 600, 714
MaeI	CTAG	1 cut(s)	815
MaeII	ACGT	2 cut(s)	84, 255
MalI	GATC	4 cut(s)	74, 93, 164, 357
MboI	GATC	4 cut(s)	72, 91, 162, 355
MflI	RGATCY	2 cut(s)	72, 355
MluCI	AATT	3 cut(s)	538, 597, 868
MlyI	GAGTC	3 cut(s)	113, 148, 695
MmeI	TCCRAC	1 cut(s)	300
MseI	TTAA	5 cut(s)	81, 198, 752, 809, 883
MspI	CCGG	3 cut(s)	23, 260, 327
MspR9I	CCNGG	4 cut(s)	179, 260, 261, 328
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	5 cut(s)	110, 419, 724, 737, 741
NciI	CCSGG	3 cut(s)	260, 261, 328
NcoI	CCATGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	4 cut(s)	72, 91, 162, 355
NlaIII	CATG	3 cut(s)	406, 445, 607
NlaIV	GGNNCC	2 cut(s)	74, 357
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	167, 558, 854
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	3 cut(s)	113, 147, 694
PpsI	GAGTC	3 cut(s)	113, 147, 694
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	74, 357
PspPI	GGNCC	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	72, 355
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SalI	GTCGAC	1 cut(s)	614
SaqAI	TTAA	5 cut(s)	81, 198, 752, 809, 883
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	72, 91, 162, 355
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	3 cut(s)	113, 148, 695
ScrFI	CCNGG	4 cut(s)	179, 260, 261, 328
SetI	ASST	9 cut(s)	42, 63, 87, 157, 205, 258, 351, 420, 615
SfaNI	GCATC	3 cut(s)	467, 600, 714
SmaI	CCCGGG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	3 cut(s)	538, 597, 868
SsiI	CCGC	4 cut(s)	26, 266, 269, 727
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	1 cut(s)	815
StyD4I	CCNGG	4 cut(s)	177, 258, 259, 326
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	661, 682
TaiI	ACGT	2 cut(s)	87, 258
TaqI	TCGA	3 cut(s)	54, 165, 615
TasI	AATT	3 cut(s)	538, 597, 868
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	167, 558, 854
Tru1I	TTAA	5 cut(s)	81, 198, 752, 809, 883
Tru9I	TTAA	5 cut(s)	81, 198, 752, 809, 883
TscAI	CASTG	1 cut(s)	472
TspDTI	ATGAA	5 cut(s)	115, 303, 520, 585, 592
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	1 cut(s)	597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmaI	CCCGGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.