Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

945423 .. 946625

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG014900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCTGATGTGTTTTTATTTGCTGAACAGTTGGAAGAGTTGTATCGTAATCCGAAAGTTAGGCTTATGACGGTCTCCAATATTGTAAACGAGATACAGCTGGAACGCTCGGATTTCTATTTCGAAATAGTAAAGACGATTGCGCCTGAAGTTATTCATGCAACGTATATTGCAGTACATGATAAGAAAACTGATACGGTTAAATATGAACGTCTGGTTACTCTGAGGACTTGTTATAGCCTTGATCTCATATTATGGAATTGCATGGTCCTCCCCAAGTCAAGTCAAGATGACGACCTTGAAATTCCACCAGAATGTCCAAATGCTTCTTGTAAAAGAATAATCACAAATGAGGTTAATCTTTCGGAGTATCTTGCGCAAACATGGAAACTTGTATGGTTGATTCCAATTGGTGGTAAAATAACCCGGAAAGAGATTATTGACCGAAAGATAGATGAGCAAGTGAAAAATTTGATTAAGTGGCTGAAAGACTTGTTTCCACAAGATGATGACAAGCAATTTGTGATCGGCATTCGACAACATGCGGAATACAAAGTTATGGCTGATAAATTAAGGAAGAATGCAGTCATTCTGTATAATATCATTATATCTCTAATTAGGGGGAAAAGGATGGCATCTGGAGGCAAAATAGCAGAACTTGAGGAAAAGCTTACTAACGAAATCAGATATTACGTTCAAAATTTTGAAGAGAAAAATAGAAAGGTTTTTGACGTTAGAGAACCTCTGCGATATTTGCTGGAGTACAATTTGAAGTGGCAAGTGGGTATTTCTGAATATAAGATCAGTACAGACGCGAAGCAACTAAGTGAACTTGAAGATAGCAGGTTTGAAGCGGAGAGAAAAGGCCTGATGTGTATCCATTTGCATCAGTTGATAGAGGAAATTATGAGAAGCGGCGGCTCTGTTGAAATAGAGAAGCTTGAAAAGCTCATTAGCGATAGATATGCAGTTAAAAGATTTACAATTCAAGGCCAGATTAATTTGCTAGTAAGTATGAACATTCTACGTTCGGATGGGAATGGAATTGATTTAGTAGAAGCTAACAAAACCCACCAATCAATAATCGCCCGGCTTGAGCAGGCAGCAGATATAGCCTTGAAAAGTCTTGAAAACACAACGTCCAAGAAGCCTATGAAGTACTCGGCGTACATGAATAAGGTTACAAAGGCATACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

46.62

Weight (kDa)

8.52

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	834
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccII	CGCG	1 cut(s)	815
AciI	CCGC	4 cut(s)	545, 854, 915, 918
AcsI	RAATTY	3 cut(s)	303, 469, 700
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	5 cut(s)	177, 764, 808, 1160, 1169
AfiI	CCNNNNNNNGG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	100, 670, 940, 949, 1061
AluI	AGCT	5 cut(s)	100, 670, 940, 949, 1061
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	2 cut(s)	865, 991
ApeKI	GCWGC	1 cut(s)	1103
ApoI	RAATTY	3 cut(s)	303, 469, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AseI	ATTAAT	1 cut(s)	999
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	145, 379
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	2 cut(s)	427, 1090
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	1115
BccI	CCATC	2 cut(s)	625, 1028
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciVI	GTATCC	1 cut(s)	887
BcnI	CCSGG	2 cut(s)	427, 1090
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	1007
BfuAI	ACCTGC	1 cut(s)	834
BfuI	GTATCC	1 cut(s)	887
BisI	GCNGC	3 cut(s)	916, 919, 1104
BlsI	GCNGC	3 cut(s)	917, 920, 1105
BmcAI	AGTACT	1 cut(s)	1160
Bme1390I	CCNGG	2 cut(s)	427, 1090
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	427, 1090
BmsI	GCATC	2 cut(s)	644, 895
BpmI	CTGGAG	2 cut(s)	660, 779
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	2 cut(s)	680, 1115
BpuMI	CCSGG	2 cut(s)	427, 1090
BsaBI	GATNNNNATC	1 cut(s)	875
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	875
BseGI	GGATG	2 cut(s)	636, 1039
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	1115
Bsh1236I	CGCG	1 cut(s)	815
BshFI	GGCC	2 cut(s)	867, 993
BsiSI	CCGG	2 cut(s)	427, 1090
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	531, 586
BsnI	GGCC	2 cut(s)	867, 993
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	244, 525, 801
BspACI	CCGC	4 cut(s)	545, 854, 915, 918
BspANI	GGCC	2 cut(s)	867, 993
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	815
BspMI	ACCTGC	1 cut(s)	834
BspT104I	TTCGAA	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	79
BssMI	GATC	3 cut(s)	244, 525, 801
Bst4CI	ACNGT	3 cut(s)	30, 73, 199
Bst6I	CTCTTC	2 cut(s)	30, 702
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	1101
BstDEI	CTNAG	2 cut(s)	224, 824
BstF5I	GGATG	2 cut(s)	636, 1039
BstFNI	CGCG	1 cut(s)	815
BstHHI	GCGC	2 cut(s)	145, 379
BstKTI	GATC	3 cut(s)	247, 528, 804
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	3 cut(s)	244, 525, 801
BstMWI	GCNNNNNNNGC	3 cut(s)	754, 946, 1112
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	425, 1088
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	1 cut(s)	1115
BsuI	GTATCC	1 cut(s)	887
BsuRI	GGCC	2 cut(s)	867, 993
BtsCI	GGATG	2 cut(s)	636, 1039
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	1 cut(s)	1101
CfoI	GCGC	2 cut(s)	145, 379
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	5 cut(s)	176, 763, 807, 1159, 1168
CviAII	CATG	6 cut(s)	158, 179, 265, 384, 542, 1171
CviQI	GTAC	5 cut(s)	176, 763, 807, 1159, 1168
DdeI	CTNAG	2 cut(s)	224, 824
DpnI	GATC	3 cut(s)	246, 527, 803
DpnII	GATC	3 cut(s)	244, 525, 801
Eam1104I	CTCTTC	2 cut(s)	30, 702
EarI	CTCTTC	2 cut(s)	30, 702
Eco147I	AGGCCT	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	168
FaeI	CATG	6 cut(s)	161, 182, 268, 387, 545, 1174
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	6 cut(s)	157, 178, 264, 383, 541, 1170
Fnu4HI	GCNGC	3 cut(s)	916, 919, 1104
FokI	GGATG	2 cut(s)	643, 1046
Fsp4HI	GCNGC	3 cut(s)	916, 919, 1104
FspBI	CTAG	1 cut(s)	1007
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	2 cut(s)	144, 378
GluI	GCNGC	3 cut(s)	916, 919, 1104
GsuI	CTGGAG	2 cut(s)	660, 779
HaeIII	GGCC	2 cut(s)	867, 993
HapII	CCGG	2 cut(s)	427, 1090
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	2 cut(s)	145, 379
Hin1II	CATG	6 cut(s)	161, 182, 268, 387, 545, 1174
Hin6I	GCGC	2 cut(s)	143, 377
HinP1I	GCGC	2 cut(s)	143, 377
HindIII	AAGCTT	2 cut(s)	668, 938
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	427, 1090
Hpy166II	GTNNAC	2 cut(s)	88, 830
Hpy188I	TCNGA	7 cut(s)	54, 112, 225, 367, 686, 793, 1033
Hpy188III	TCNNGA	3 cut(s)	287, 639, 1127
Hpy8I	GTNNAC	2 cut(s)	88, 830
HpyCH4III	ACNGT	3 cut(s)	30, 73, 199
HpyCH4IV	ACGT	6 cut(s)	164, 211, 693, 732, 1027, 1139
HpyCH4V	TGCA	6 cut(s)	161, 173, 264, 584, 886, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	754, 946, 1112
HpyF3I	CTNAG	2 cut(s)	224, 824
HpySE526I	ACGT	6 cut(s)	164, 211, 693, 732, 1027, 1139
Hsp92II	CATG	6 cut(s)	161, 182, 268, 387, 545, 1174
HspAI	GCGC	2 cut(s)	143, 377
Kzo9I	GATC	3 cut(s)	244, 525, 801
Lsp1109I	GCAGC	1 cut(s)	1115
LweI	GCATC	2 cut(s)	644, 895
MaeI	CTAG	1 cut(s)	1007
MaeII	ACGT	6 cut(s)	164, 211, 693, 732, 1027, 1139
MaeIII	GTNAC	2 cut(s)	217, 1180
MalI	GATC	3 cut(s)	246, 527, 803
MboI	GATC	3 cut(s)	244, 525, 801
MboII	GAAGA	4 cut(s)	47, 589, 719, 848
MfeI	CAATTG	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	7 cut(s)	219, 281, 346, 635, 655, 753, 892
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	6 cut(s)	201, 357, 477, 572, 972, 999
MslI	CAYNNNNRTG	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	2 cut(s)	427, 1090
MspR9I	CCNGG	2 cut(s)	427, 1090
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	2 cut(s)	531, 586
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	3 cut(s)	754, 946, 1112
NciI	CCSGG	2 cut(s)	427, 1090
NdeII	GATC	3 cut(s)	244, 525, 801
NlaIII	CATG	6 cut(s)	161, 182, 268, 387, 545, 1174
NmeAIII	GCCGAG	1 cut(s)	1142
NsbI	TGCGCA	1 cut(s)	378
NspI	RCATGY	1 cut(s)	545
NspV	TTCGAA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	867
PctI	GAATGC	2 cut(s)	531, 586
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	917, 920, 1105
PshBI	ATTAAT	1 cut(s)	999
PspPI	GGNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	5 cut(s)	177, 764, 808, 1160, 1169
RsaNI	GTAC	5 cut(s)	176, 763, 807, 1159, 1168
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	6 cut(s)	201, 357, 477, 572, 972, 999
SatI	GCNGC	3 cut(s)	916, 919, 1104
Sau3AI	GATC	3 cut(s)	244, 525, 801
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	1160
ScrFI	CCNGG	2 cut(s)	427, 1090
SfaNI	GCATC	2 cut(s)	644, 895
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	659, 1094
SmoI	CTYRAG	2 cut(s)	659, 1094
SseBI	AGGCCT	1 cut(s)	867
SsiI	CCGC	4 cut(s)	545, 854, 915, 918
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	1007
StuI	AGGCCT	1 cut(s)	867
StyD4I	CCNGG	2 cut(s)	425, 1088
TaaI	ACNGT	3 cut(s)	30, 73, 199
TaiI	ACGT	6 cut(s)	167, 214, 696, 735, 1030, 1142
TaqI	TCGA	2 cut(s)	123, 535
TaqII	GACCGA	1 cut(s)	459
TatI	WGTACW	4 cut(s)	175, 762, 806, 1158
TauI	GCSGC	2 cut(s)	918, 921
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	6 cut(s)	201, 357, 477, 572, 972, 999
Tru9I	TTAA	6 cut(s)	201, 357, 477, 572, 972, 999
TseI	GCWGC	1 cut(s)	1103
TspDTI	ATGAA	5 cut(s)	146, 222, 1031, 1169, 1187
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	3 cut(s)	303, 469, 700
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	1007
ZrmI	AGTACT	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.