Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

1867980 .. 1871404

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG026200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGGAGAGAAACTTACTCTGGTCGTGGAAAACGGAGCCCGATGCCGTGTTTGAGAATCTCCAATGGACGAGGATGAAGGTCCAACTTAACGATTCTGATCGCGCAGAGGCCATAGCTGCCATCGAAGATGTCCTCAAAAAATTGCAGGAAGATGATAAGCGACATGTACTCTTCTCAATCGCGTACGCCGTCCAACAGGAACTCTTTAAATCTAAGGAGATAGACTTGGAGATAATAAAAAAACTTGCAGCGTTGTACCCACGGTGCGTGGAGGATGATGACGACGACCACGACCACGATGACAACTGGCTGACGGCCGCGGCGGGTGATTTTAAACTGTCAGCGGATGCGGATGCGGAGGAGGAGGATGAGGATGACGAGGAGGATGATGAGGCTGCGGATGAGGACTGGGAAGAGTATGTGGATGAGGATGAGGCCGTGGCGGATGGCGGGGATGATGATCTTAAAAAGAGAGAAGCAGCCATGAAGAAGTTTAAAGAAGCAGGCATCAAGGAATTGAAGCGACAGTGCAATAGTATGCGATGCACTCTGAAACAAGGCCAAGAGCAGGAAATCCTAACTTTTATGATTTCATTCTTTACCATACAAAGATTCAGAGTTGATCACGAATATCGGATGAAAAGGTGCATTGAATTTTTCATGTCACGTGTCAAAGGTTATATTTCTAGGTCTTGCACCCTCGACGACTTGGAGACTGTGAAAAAAGCCGTTGAAAGTGTGAAGAAGGAGAGGGAGGCTGATGCTGATCAAGTTCATCAACTGTTGGAAAAGAATACTGTACCGACTAATGAAGAAGGGATTGTTACCCCTGTGAACCAGTTAAAACAAGAGAAAAGAGAATGTGGTATTGAATGCGAGATTGTGACCCCCTTAAACCTGCCAGAACAAGAAGAAATCTGCCTCACACCGCCGGAATGTGAAGATATGAAAAATGAAGAATGCGGGATTGCGACTCCTATGAACCAGCCAGAACAAGAAGAAAAAATGGTCGATGTTAATTTCTGCCTCACACCACTATGGGAAGATACGAAAACTGAAGAATGTGCGACTAGGGGCAGGGCTAAGAGAAAGCTCGCTCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

42.77

Weight (kDa)

4.48

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	909
AccII	CGCG	3 cut(s)	105, 185, 323
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	1080
AcvI	CACGTG	1 cut(s)	671
AfaI	GTAC	4 cut(s)	171, 188, 260, 804
AfiI	CCNNNNNNNGG	1 cut(s)	571
AflIII	ACRYGT	2 cut(s)	166, 670
AgsI	TTSAA	4 cut(s)	523, 656, 737, 875
AluBI	AGCT	3 cut(s)	119, 1096, 1105
AluI	AGCT	3 cut(s)	119, 1096, 1105
Alw26I	GTCTC	1 cut(s)	710
AoxI	GGCC	4 cut(s)	111, 318, 438, 562
ApeKI	GCWGC	4 cut(s)	119, 251, 398, 482
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	671
BbvI	GCAGC	4 cut(s)	106, 263, 385, 494
BccI	CCATC	2 cut(s)	131, 443
BceAI	ACGGC	5 cut(s)	32, 176, 333, 425, 716
BclI	TGATCA	2 cut(s)	625, 769
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	2 cut(s)	690, 1074
BfuAI	ACCTGC	1 cut(s)	909
BisI	GCNGC	6 cut(s)	120, 252, 321, 324, 399, 483
BlpI	GCTNAGC	1 cut(s)	1101
BlsI	GCNGC	6 cut(s)	121, 253, 322, 325, 400, 484
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	6 cut(s)	34, 340, 346, 519, 536, 754
BmuI	ACTGGG	1 cut(s)	421
Bpu1102I	GCTNAGC	1 cut(s)	1101
BsaAI	YACGTR	1 cut(s)	671
BsaBI	GATNNNNATC	3 cut(s)	99, 462, 768
BsaJI	CCNNGG	3 cut(s)	263, 321, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	3 cut(s)	314, 416, 841
Bse8I	GATNNNNATC	3 cut(s)	99, 462, 768
BseDI	CCNNGG	3 cut(s)	263, 321, 441
BseJI	GATNNNNATC	3 cut(s)	99, 462, 768
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseNI	ACTGG	3 cut(s)	314, 416, 841
BseRI	GAGGAG	3 cut(s)	377, 380, 398
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	106, 263, 385, 494
Bsh1236I	CGCG	3 cut(s)	105, 185, 323
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	113, 320, 440, 564
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	935
BsiWI	CGTACG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	710
BsmI	GAATGC	2 cut(s)	881, 968
BsnI	GGCC	4 cut(s)	113, 320, 440, 564
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	100, 463, 625, 769
Bsp1720I	GCTNAGC	1 cut(s)	1101
BspANI	GGCC	4 cut(s)	113, 320, 440, 564
BspFNI	CGCG	3 cut(s)	105, 185, 323
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	314, 416, 841
BssECI	CCNNGG	3 cut(s)	263, 321, 441
BssMI	GATC	4 cut(s)	100, 463, 625, 769
Bst4CI	ACNGT	6 cut(s)	267, 342, 531, 721, 786, 802
Bst6I	CTCTTC	2 cut(s)	179, 411
BstBAI	YACGTR	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	508, 1098
BstDEI	CTNAG	3 cut(s)	216, 1086, 1101
BstDSI	CCRYGG	3 cut(s)	263, 321, 441
BstFNI	CGCG	3 cut(s)	105, 185, 323
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	4 cut(s)	103, 466, 628, 772
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	4 cut(s)	100, 463, 625, 769
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 1102
BstNSI	RCATGY	1 cut(s)	170
BstUI	CGCG	3 cut(s)	105, 185, 323
BstV1I	GCAGC	4 cut(s)	106, 263, 385, 494
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	113, 320, 440, 564
BtgI	CCRYGG	3 cut(s)	263, 321, 441
BtgZI	GCGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	536
BveI	ACCTGC	1 cut(s)	909
Cac8I	GCNNGC	2 cut(s)	508, 1098
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	82
Cfr42I	CCGCGG	1 cut(s)	324
Csp6I	GTAC	4 cut(s)	170, 187, 259, 803
CviAII	CATG	3 cut(s)	167, 487, 664
CviQI	GTAC	4 cut(s)	170, 187, 259, 803
DdeI	CTNAG	3 cut(s)	216, 1086, 1101
DpnI	GATC	4 cut(s)	102, 465, 627, 771
DpnII	GATC	4 cut(s)	100, 463, 625, 769
DraI	TTTAAA	3 cut(s)	211, 337, 499
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	179, 411
EarI	CTCTTC	2 cut(s)	179, 411
EciI	GGCGGA	2 cut(s)	20, 461
EclXI	CGGCCG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	1080
Eco72I	CACGTG	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	3 cut(s)	170, 490, 667
FatI	CATG	3 cut(s)	166, 486, 663
FauI	CCCGC	3 cut(s)	319, 446, 959
FbaI	TGATCA	2 cut(s)	625, 769
Fnu4HI	GCNGC	6 cut(s)	120, 252, 321, 324, 399, 483
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	120, 252, 321, 324, 399, 483
FspBI	CTAG	2 cut(s)	690, 1074
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	6 cut(s)	120, 252, 321, 324, 399, 483
HaeIII	GGCC	4 cut(s)	113, 320, 440, 564
HapII	CCGG	1 cut(s)	935
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	170, 490, 667
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	4 cut(s)	58, 95, 615, 976
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	4 cut(s)	100, 555, 620, 639
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	2 cut(s)	290, 710
HpyAV	CCTTC	3 cut(s)	73, 742, 812
HpyCH4III	ACNGT	6 cut(s)	267, 342, 531, 721, 786, 802
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	6 cut(s)	148, 251, 534, 549, 651, 699
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 1102
HpyF3I	CTNAG	3 cut(s)	216, 1086, 1101
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	3 cut(s)	170, 490, 667
HspAI	GCGC	1 cut(s)	105
Ksp22I	TGATCA	2 cut(s)	625, 769
KspI	CCGCGG	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	100, 463, 625, 769
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	4 cut(s)	106, 263, 385, 494
LweI	GCATC	6 cut(s)	34, 340, 346, 519, 536, 754
MaeI	CTAG	2 cut(s)	690, 1074
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	3 cut(s)	666, 826, 886
MalI	GATC	4 cut(s)	102, 465, 627, 771
MboI	GATC	4 cut(s)	100, 463, 625, 769
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	143, 518, 656, 1021
MlyI	GAGTC	1 cut(s)	970
MmeI	TCCRAC	3 cut(s)	109, 220, 768
MseI	TTAA	9 cut(s)	90, 210, 336, 468, 498, 845, 896, 1020, 1108
MslI	CAYNNNNRTG	1 cut(s)	1039
MspA1I	CMGCKG	2 cut(s)	323, 347
MspI	CCGG	1 cut(s)	935
Mva1269I	GAATGC	2 cut(s)	881, 968
MvnI	CGCG	3 cut(s)	105, 185, 323
MwoI	GCNNNNNNNGC	2 cut(s)	119, 1102
NdeII	GATC	4 cut(s)	100, 463, 625, 769
NlaIII	CATG	3 cut(s)	170, 490, 667
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	666, 886
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 291
PctI	GAATGC	2 cut(s)	881, 968
PfeI	GAWTC	3 cut(s)	58, 95, 615
Pfl23II	CGTACG	1 cut(s)	186
PkrI	GCNGC	6 cut(s)	121, 253, 322, 325, 400, 484
PleI	GAGTC	1 cut(s)	970
PmaCI	CACGTG	1 cut(s)	671
PmlI	CACGTG	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	970
Ppu21I	YACGTR	1 cut(s)	671
PscI	ACATGT	1 cut(s)	166
PspCI	CACGTG	1 cut(s)	671
PspLI	CGTACG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	4 cut(s)	171, 188, 260, 804
RsaNI	GTAC	4 cut(s)	170, 187, 259, 803
RseI	CAYNNNNRTG	1 cut(s)	1039
SacII	CCGCGG	1 cut(s)	324
SaqAI	TTAA	9 cut(s)	90, 210, 336, 468, 498, 845, 896, 1020, 1108
SatI	GCNGC	6 cut(s)	120, 252, 321, 324, 399, 483
Sau3AI	GATC	4 cut(s)	100, 463, 625, 769
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	970
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	84, 121, 650, 673, 682, 695, 903, 1098, 1107
SfaNI	GCATC	6 cut(s)	34, 340, 346, 519, 536, 754
Sfr303I	CCGCGG	1 cut(s)	324
SgrBI	CCGCGG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	1039
Sse9I	AATT	4 cut(s)	143, 518, 656, 1021
SspMI	CTAG	2 cut(s)	690, 1074
TaaI	ACNGT	6 cut(s)	267, 342, 531, 721, 786, 802
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	3 cut(s)	126, 705, 1014
TasI	AATT	4 cut(s)	143, 518, 656, 1021
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	2 cut(s)	323, 326
TfiI	GAWTC	3 cut(s)	58, 95, 615
Tru1I	TTAA	9 cut(s)	90, 210, 336, 468, 498, 845, 896, 1020, 1108
Tru9I	TTAA	9 cut(s)	90, 210, 336, 468, 498, 845, 896, 1020, 1108
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	2 cut(s)	666, 886
TseI	GCWGC	4 cut(s)	119, 251, 398, 482
Tsp45I	GTSAC	2 cut(s)	666, 886
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	2 cut(s)	690, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.