Rh7CG015500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001839
Physical Location & Seq
Forward (+)
1149342 .. 1150211
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG015500.1

Sequence Viewer

Length: 870 bp
ATGGCGTTCAGACAATATCCTCCTCTTAGCAAATTCACAATTAAAATTTTTTATGGGGGAGAGTGGAAAAGCGGAGGCTATACAAATGAAAAAATAATTTGGGTTGATAATCTTGATTCAGAGACGACGAAAATGGCTGACTTAAAGAATATTGCATCTAAGCTTGGTTATCAAAATACTCTGACAAATTATTCATATAGATCGCCTACAAGACGGGATTTTGTGAACATCAATACTGATGAAGATGTAGAAAACATGATCAAGGAACTGCCAGTTACTCGAGAGTTGGAAATATATTTCGATGGAGTTAGAAAAGAAGAAAAACCGGAAATGTATCCTACTATTTTGTTCTGGAACTGCCGTGGACTTAGTGACTCAGCCATTTATATGCTAAAAGTTCTTATACGTATCTATGACCCTTCAATTATTTTCCTTATAGAGACTCGTTTGTCGTCTGAGGTTATGAAAGAAGTCTCTTCCTTGCTAGGGTTTCATAATGTTTGGGATTCTCCTACAAGCAGAGGGGCAGCCGGTAAAGATAATTGTGTTGGTTTATCCATGGTATTGAGAACAAATGTAAATGTCGAATTTTTAAATAAGACAAGCAATTATCTTGATTTCGTGATTAACGTAAGTCCTACTGATCAGAAGTGGAGGTTGACAGGATTCTATGGGGACCCAAAATTGAAGTATCGCTCATGGGAGTGGCTCCGAAGCTTATCAAAAATTAAGAAGAATCTCCCATGGATAATTTTTGGGGACTTTAATGAAATTTTAGATCGGGATGAGAAAAAGGGCGGACCAGAAAAGAGCAAATCGAAGATAAAGGCGTTCAAGAATGTTGTCAAAGAATGTGGTCGATCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

289

Amino Acids

33.58

Weight (kDa)

9.08

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 11 - 100 1.4e-06 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
AciI CCGC 2 cut(s) 72, 798
AcsI RAATTY 4 cut(s) 32, 45, 587, 771
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 3 cut(s) 423, 688, 835
AluBI AGCT 2 cut(s) 163, 717
AluI AGCT 2 cut(s) 163, 717
Alw26I GTCTC 3 cut(s) 116, 434, 478
Ama87I CYCGRG 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 4 cut(s) 32, 45, 587, 771
AspS9I GGNCC 2 cut(s) 676, 800
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 2 cut(s) 676, 800
BbvI GCAGC 1 cut(s) 539
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 345
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 2 cut(s) 258, 643
BcoDI GTCTC 3 cut(s) 116, 434, 478
BfaI CTAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme18I GGWCC 2 cut(s) 676, 800
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 676, 800
BmiI GGNNCC 3 cut(s) 677, 678, 710
BmsI GCATC 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 361, 558, 743
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 361, 558, 743
BseGI GGATG 1 cut(s) 790
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 390, 447
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 326, 531
BslFI GGGAC 2 cut(s) 689, 773
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 3 cut(s) 116, 434, 478
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 689, 773
BsoBI CYCGRG 1 cut(s) 279
Bsp143I GATC 5 cut(s) 200, 258, 643, 778, 860
Bsp19I CCATGG 2 cut(s) 558, 743
BspACI CCGC 2 cut(s) 72, 798
BspCNI CTCAG 2 cut(s) 389, 448
BspLI GGNNCC 3 cut(s) 677, 678, 710
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 3 cut(s) 361, 558, 743
BssMI GATC 5 cut(s) 200, 258, 643, 778, 860
BssT1I CCWWGG 2 cut(s) 558, 743
Bst6I CTCTTC 1 cut(s) 481
BstBAI YACGTR 1 cut(s) 407
BstDEI CTNAG 5 cut(s) 26, 159, 368, 376, 456
BstDSI CCRYGG 3 cut(s) 361, 558, 743
BstF5I GGATG 1 cut(s) 790
BstKTI GATC 5 cut(s) 203, 261, 646, 781, 863
BstMAI GTCTC 3 cut(s) 116, 434, 478
BstMBI GATC 5 cut(s) 200, 258, 643, 778, 860
BstSNI TACGTA 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 539
BsuI GTATCC 1 cut(s) 345
BtgI CCRYGG 3 cut(s) 361, 558, 743
BtsCI GGATG 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 676, 800
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 4 cut(s) 256, 559, 699, 744
CviJI RGCY 7 cut(s) 78, 137, 163, 380, 530, 709, 717
CviKI_1 RGCY 7 cut(s) 78, 137, 163, 380, 530, 709, 717
DdeI CTNAG 5 cut(s) 26, 159, 368, 376, 456
DpnI GATC 5 cut(s) 202, 260, 645, 780, 862
DpnII GATC 5 cut(s) 200, 258, 643, 778, 860
DraI TTTAAA 1 cut(s) 594
DrdI GACNNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
EciI GGCGGA 1 cut(s) 813
Eco105I TACGTA 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 558, 743
Eco47I GGWCC 2 cut(s) 676, 800
Eco88I CYCGRG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 558, 743
ErhI CCWWGG 2 cut(s) 558, 743
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 4 cut(s) 259, 562, 702, 747
FaqI GGGAC 2 cut(s) 689, 773
FatI CATG 4 cut(s) 255, 558, 698, 743
FbaI TGATCA 2 cut(s) 258, 643
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 1 cut(s) 797
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 1 cut(s) 485
GluI GCNGC 1 cut(s) 528
HapII CCGG 2 cut(s) 326, 531
Hin1II CATG 4 cut(s) 259, 562, 702, 747
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HindIII AAGCTT 2 cut(s) 161, 715
HinfI GANTC 6 cut(s) 116, 374, 442, 506, 666, 736
HpaII CCGG 2 cut(s) 326, 531
Hpy166II GTNNAC 3 cut(s) 226, 365, 660
Hpy188I TCNGA 6 cut(s) 11, 121, 183, 457, 648, 713
Hpy188III TCNNGA 7 cut(s) 113, 281, 352, 614, 622, 782, 835
Hpy8I GTNNAC 3 cut(s) 226, 365, 660
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 429
HpyCH4IV ACGT 2 cut(s) 406, 630
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 5 cut(s) 26, 159, 368, 376, 456
HpySE526I ACGT 2 cut(s) 406, 630
Hsp92II CATG 4 cut(s) 259, 562, 702, 747
KflI GGGWCCC 1 cut(s) 676
Ksp22I TGATCA 2 cut(s) 258, 643
Kzo9I GATC 5 cut(s) 200, 258, 643, 778, 860
LmnI GCTCC 1 cut(s) 714
LpnPI CCDG 6 cut(s) 285, 337, 339, 544, 648, 816
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 485
MaeII ACGT 2 cut(s) 406, 630
MaeIII GTNAC 2 cut(s) 274, 371
MalI GATC 5 cut(s) 202, 260, 645, 780, 862
MboI GATC 5 cut(s) 200, 258, 643, 778, 860
MboII GAAGA 5 cut(s) 254, 329, 468, 745, 832
MlyI GAGTC 2 cut(s) 368, 436
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 6 cut(s) 30, 33, 68, 451, 515, 648
MseI TTAA 6 cut(s) 42, 143, 593, 627, 729, 765
MslI CAYNNNNRTG 2 cut(s) 386, 703
MspI CCGG 2 cut(s) 326, 531
NcoI CCATGG 2 cut(s) 558, 743
NdeII GATC 5 cut(s) 200, 258, 643, 778, 860
NlaIII CATG 4 cut(s) 259, 562, 702, 747
NlaIV GGNNCC 3 cut(s) 677, 678, 710
NmuCI GTSAC 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PfeI GAWTC 4 cut(s) 116, 506, 666, 736
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 2 cut(s) 368, 436
PpsI GAGTC 2 cut(s) 368, 436
Ppu21I YACGTR 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
PspN4I GGNNCC 3 cut(s) 677, 678, 710
PspPI GGNCC 2 cut(s) 676, 800
PspPPI RGGWCCY 1 cut(s) 676
RseI CAYNNNNRTG 2 cut(s) 386, 703
SaqAI TTAA 6 cut(s) 42, 143, 593, 627, 729, 765
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 5 cut(s) 200, 258, 643, 778, 860
Sau96I GGNCC 2 cut(s) 676, 800
SchI GAGTC 2 cut(s) 368, 436
SetI ASST 6 cut(s) 165, 409, 462, 633, 659, 719
SfaNI GCATC 1 cut(s) 164
Sfr274I CTCGAG 1 cut(s) 279
SinI GGWCC 2 cut(s) 676, 800
SlaI CTCGAG 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 386, 703
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SnaBI TACGTA 1 cut(s) 407
SsiI CCGC 2 cut(s) 72, 798
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 485
StyI CCWWGG 2 cut(s) 558, 743
TaiI ACGT 2 cut(s) 409, 633
TaqI TCGA 5 cut(s) 280, 300, 585, 818, 859
TfiI GAWTC 4 cut(s) 116, 506, 666, 736
Tru1I TTAA 6 cut(s) 42, 143, 593, 627, 729, 765
Tru9I TTAA 6 cut(s) 42, 143, 593, 627, 729, 765
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 6 cut(s) 102, 183, 255, 479, 482, 783
VpaK11BI GGWCC 2 cut(s) 676, 800
XapI RAATTY 4 cut(s) 32, 45, 587, 771
XhoI CTCGAG 1 cut(s) 279
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.