Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

1678459 .. 1680958

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGGAGAGAAACTTGCTCTGGTCGTGGAAAACGGAGCCCGATGCCGTGTTTGAGAATCTCCAATGGACGAGGATGAAGGTCCAACTTAAAGATTCTGATCGAGCAGAGGCCATAGCTGCCATCGAAGATGTCCTCAAAAAATTGCAGGAAGATGATAAGCGACATGTACTCTTCTCAATCGCCTACGCCGTCCAACAGGAACTCTTTAAATCTAAGGAGATAGACGTGGAGATAATAAAAAAACTTGCAGCGTTGTACCCACGGTGCGTGGAGGATGATGACGACGACCACCACCACGATGACAACTGGCTGACGTCGGCGGCGGGTAATTTTAAACTGTCAGCGGATGCGGATGCGGAGGAGGAGGATGAGGATGACGAGGAGGATGATGAGGCTGCGGATGAGGACTGGGAAGAGTATGTGGATGAGGATGAGGCCAGAGAAGCAGCCATGAAGAAGTTTGAAGAAGCAGGCATCAAGGAATTGAAGCGACAGTGCAATAGTATGGGATGCAGTCTGAAACAAGGCCAAGAGCAGGAAATCCTAACTTTTATGATTTCATTCTTTACCATACAAAGATTCAGAGTTGATCACGAATATCGGATGAAAAGGTGCATTGAATTTTTCATGTCACGTGTCAAAGGTTATATTTCTAGGTCTTGCACCCTCGACGACTTGGAGACTGTGAAAAAAGCCGTTGAAAGTGTGAAGAAGGAGAGGGAGGCTGATGCTGATCAAGTTCATCAACTGGTAATGCAGAAACCCTTTTCGGAAGAATGTGGTATTGAATGCGAGATTGTGACCCCCTTAAACCTGCCAGAACAAGAAGAAATCTGCCTCACACCGCCGGAATGTGAAGATATGAAAAATGAAGAATGCAGGATTGCGACTCCTATGAACCAGCCAGAACAAGAAGAAAATATGGTCGATGTTAATTTCTGCCTCACACCACTATGGGAAGATACGAAAACTGAAGAATGTGCGACTAGGGACAGGGCTAAGAGAAAGCTCCCTCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

39.85

Weight (kDa)

4.47

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	825
AciI	CCGC	8 cut(s)	5, 323, 326, 347, 353, 359, 401, 848
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	996
AcvI	CACGTG	1 cut(s)	638
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	171, 260
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	2 cut(s)	166, 637
AgsI	TTSAA	5 cut(s)	467, 490, 623, 704, 791
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	3 cut(s)	119, 1012, 1021
AluI	AGCT	3 cut(s)	119, 1012, 1021
Alw26I	GTCTC	1 cut(s)	677
AoxI	GGCC	3 cut(s)	111, 438, 529
ApeKI	GCWGC	4 cut(s)	119, 251, 398, 449
ApoI	RAATTY	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	638
BbvCI	CCTCAGC	1 cut(s)	1017
BbvI	GCAGC	4 cut(s)	106, 263, 385, 461
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	3 cut(s)	32, 176, 683
BclI	TGATCA	2 cut(s)	592, 736
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	2 cut(s)	657, 990
BfuAI	ACCTGC	1 cut(s)	825
BisI	GCNGC	5 cut(s)	120, 252, 324, 399, 450
BlsI	GCNGC	5 cut(s)	121, 253, 325, 400, 451
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	6 cut(s)	34, 340, 346, 486, 503, 721
BmuI	ACTGGG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	1017
BsaAI	YACGTR	1 cut(s)	638
BsaBI	GATNNNNATC	2 cut(s)	99, 735
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	3 cut(s)	314, 416, 756
Bse8I	GATNNNNATC	2 cut(s)	99, 735
BseDI	CCNNGG	1 cut(s)	263
BseJI	GATNNNNATC	2 cut(s)	99, 735
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseNI	ACTGG	3 cut(s)	314, 416, 756
BseRI	GAGGAG	3 cut(s)	377, 380, 398
BseXI	GCAGC	4 cut(s)	106, 263, 385, 461
BshFI	GGCC	3 cut(s)	113, 440, 531
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	1007
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	1007
BsmI	GAATGC	2 cut(s)	797, 884
BsnI	GGCC	3 cut(s)	113, 440, 531
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	100, 592, 736
BspACI	CCGC	8 cut(s)	5, 323, 326, 347, 353, 359, 401, 848
BspANI	GGCC	3 cut(s)	113, 440, 531
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	825
BsrI	ACTGG	3 cut(s)	314, 416, 756
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	3 cut(s)	100, 592, 736
BssNI	GRCGYC	1 cut(s)	317
Bst4CI	ACNGT	4 cut(s)	267, 342, 498, 688
Bst6I	CTCTTC	2 cut(s)	179, 411
BstACI	GRCGYC	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	216, 1002, 1017
BstDSI	CCRYGG	1 cut(s)	263
BstKTI	GATC	3 cut(s)	103, 595, 739
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	3 cut(s)	100, 592, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 446, 1018
BstNSI	RCATGY	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	106, 263, 385, 461
BsuRI	GGCC	3 cut(s)	113, 440, 531
BtgI	CCRYGG	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	825
Cac8I	GCNNGC	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	170, 259
CviAII	CATG	3 cut(s)	167, 454, 631
CviQI	GTAC	2 cut(s)	170, 259
DdeI	CTNAG	3 cut(s)	216, 1002, 1017
DpnI	GATC	3 cut(s)	102, 594, 738
DpnII	GATC	3 cut(s)	100, 592, 736
DraI	TTTAAA	2 cut(s)	211, 337
Eam1104I	CTCTTC	2 cut(s)	179, 411
EarI	CTCTTC	2 cut(s)	179, 411
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	996
Eco72I	CACGTG	1 cut(s)	638
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	3 cut(s)	170, 457, 634
FaqI	GGGAC	1 cut(s)	1007
FatI	CATG	3 cut(s)	166, 453, 630
FauI	CCCGC	1 cut(s)	319
FbaI	TGATCA	2 cut(s)	592, 736
Fnu4HI	GCNGC	5 cut(s)	120, 252, 324, 399, 450
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	5 cut(s)	120, 252, 324, 399, 450
FspBI	CTAG	2 cut(s)	657, 990
GluI	GCNGC	5 cut(s)	120, 252, 324, 399, 450
HaeIII	GGCC	3 cut(s)	113, 440, 531
HapII	CCGG	1 cut(s)	851
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	170, 457, 634
HinfI	GANTC	4 cut(s)	58, 95, 582, 892
HpaII	CCGG	1 cut(s)	851
Hpy188I	TCNGA	5 cut(s)	100, 522, 587, 606, 775
Hpy188III	TCNNGA	1 cut(s)	596
Hpy99I	CGWCG	3 cut(s)	290, 322, 677
HpyAV	CCTTC	2 cut(s)	73, 709
HpyCH4III	ACNGT	4 cut(s)	267, 342, 498, 688
HpyCH4IV	ACGT	3 cut(s)	228, 317, 637
HpyCH4V	TGCA	8 cut(s)	148, 251, 501, 516, 618, 666, 760, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 446, 1018
HpyF3I	CTNAG	3 cut(s)	216, 1002, 1017
HpySE526I	ACGT	3 cut(s)	228, 317, 637
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	170, 457, 634
Ksp22I	TGATCA	2 cut(s)	592, 736
Kzo9I	GATC	3 cut(s)	100, 592, 736
LmnI	GCTCC	2 cut(s)	37, 1017
Lsp1109I	GCAGC	4 cut(s)	106, 263, 385, 461
LweI	GCATC	6 cut(s)	34, 340, 346, 486, 503, 721
MaeI	CTAG	2 cut(s)	657, 990
MaeII	ACGT	3 cut(s)	228, 317, 637
MaeIII	GTNAC	2 cut(s)	633, 802
MalI	GATC	3 cut(s)	102, 594, 738
MboI	GATC	3 cut(s)	100, 592, 736
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	5 cut(s)	143, 331, 485, 623, 937
MlyI	GAGTC	1 cut(s)	886
MmeI	TCCRAC	2 cut(s)	109, 220
MseI	TTAA	6 cut(s)	90, 210, 336, 812, 936, 1024
MslI	CAYNNNNRTG	2 cut(s)	300, 955
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	851
Mva1269I	GAATGC	2 cut(s)	797, 884
MwoI	GCNNNNNNNGC	3 cut(s)	119, 446, 1018
NdeII	GATC	3 cut(s)	100, 592, 736
NlaIII	CATG	3 cut(s)	170, 457, 634
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	633, 802
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	2 cut(s)	797, 884
PfeI	GAWTC	3 cut(s)	58, 95, 582
PkrI	GCNGC	5 cut(s)	121, 253, 325, 400, 451
PleI	GAGTC	1 cut(s)	886
PmaCI	CACGTG	1 cut(s)	638
PmlI	CACGTG	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	886
Ppu21I	YACGTR	1 cut(s)	638
PscI	ACATGT	1 cut(s)	166
PspCI	CACGTG	1 cut(s)	638
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	2 cut(s)	171, 260
RsaNI	GTAC	2 cut(s)	170, 259
RseI	CAYNNNNRTG	2 cut(s)	300, 955
SaqAI	TTAA	6 cut(s)	90, 210, 336, 812, 936, 1024
SatI	GCNGC	5 cut(s)	120, 252, 324, 399, 450
Sau3AI	GATC	3 cut(s)	100, 592, 736
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	886
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	6 cut(s)	34, 340, 346, 486, 503, 721
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	300, 955
Sse9I	AATT	5 cut(s)	143, 331, 485, 623, 937
SsiI	CCGC	8 cut(s)	5, 323, 326, 347, 353, 359, 401, 848
SspMI	CTAG	2 cut(s)	657, 990
TaaI	ACNGT	4 cut(s)	267, 342, 498, 688
TaiI	ACGT	3 cut(s)	231, 320, 640
TaqI	TCGA	4 cut(s)	103, 126, 672, 930
TasI	AATT	5 cut(s)	143, 331, 485, 623, 937
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	58, 95, 582
Tru1I	TTAA	6 cut(s)	90, 210, 336, 812, 936, 1024
Tru9I	TTAA	6 cut(s)	90, 210, 336, 812, 936, 1024
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	2 cut(s)	633, 802
TseI	GCWGC	4 cut(s)	119, 251, 398, 449
Tsp45I	GTSAC	2 cut(s)	633, 802
TspDTI	ATGAA	9 cut(s)	92, 470, 552, 619, 623, 734, 881, 888, 914
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	623
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	2 cut(s)	657, 990
ZraI	GACGTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.