Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

9436327 .. 9437481

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAGAGAGTTTTGACCCGGTCGTGGAAAAAGGAGCCGGATGTCGTGTTTGAGGATCTCGAATGGACGCGGGTGAAGGTCGAACTTGAGGATGATGACCGCAAAACGGCCATCAATGCCATCGAAGAAGTCCTCGAAAAAGTGGAGATAGACGTGGAGACAGTACAAAAAGTTGCAGCGTTTTACCCACGGTGCGTGGAGATTGACGACGACGACATGGACGATTACAACTGGCTGACGGCGTATGTTGATTTTAAACTGTCACCGGATGCGGAGGAGGATGAGGAGGAGGATGGTGATGCTGCTGACGCTTCGGATGAGGATATGGAGGCTGAGGATAGTGATGATGGTGATGATGGTGATGCTGCGGATGAGGCTGCTGACATTGCTGACCCTGCCGATGAGGATAATGAGTTTTTAAATTTTCTGAAAAAGAGAGAAAAGAGAGAAGCAAAGGATTTTGAAGAAGCAGGAATGCATGAATTGAAGCGACAGAGCAATATTATGGGTTGCAGTCTGAAACAAGGCCAAGAACAGCAGATCCTCAGTGTAATGATTTCATTCTTTGCCAAACAGAATTTCAGAATTGTTGACGAGTATAGGATGAAGATGTGCGTAGAAGATTTCATGTCACGTGTCAAAGGTTATATTTCTAGTACTTGCACCCTCAAAGACCCAAGTACGGTTCTCAGAGCCGTTCAAAGTGTGAAGAAGAAGAAGAAGATTGAGGCTGATGCTGATCCTGCTGTTCATCAACAGGTAATGCCTGAATCCTTTTCGGATTGCAACGATCTTGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.58

Weight (kDa)

4.27

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	4 cut(s)	70, 100, 272, 368
AclWI	GGATC	3 cut(s)	63, 535, 734
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	421, 577
AcvI	CACGTG	1 cut(s)	635
AfaI	GTAC	3 cut(s)	165, 658, 682
AfiI	CCNNNNNNNGG	3 cut(s)	24, 106, 682
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	464, 487, 701
AjiI	CACGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	63, 535, 734
AoxI	GGCC	2 cut(s)	108, 526
ApeKI	GCWGC	4 cut(s)	176, 302, 365, 377
ApoI	RAATTY	2 cut(s)	421, 577
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	5 cut(s)	85, 255, 308, 362, 371
BbrPI	CACGTG	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	188, 289, 352, 364
BccI	CCATC	5 cut(s)	119, 128, 287, 341, 350
BceAI	ACGGC	3 cut(s)	123, 255, 680
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	654
BisI	GCNGC	4 cut(s)	177, 303, 366, 378
BlsI	GCNGC	4 cut(s)	178, 304, 367, 379
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	4 cut(s)	259, 289, 352, 724
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 106, 682
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	738
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	8 cut(s)	46, 97, 274, 286, 298, 322, 376, 609
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	3 cut(s)	24, 106, 682
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	324, 559, 703
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	3 cut(s)	290, 299, 302
BseXI	GCAGC	4 cut(s)	188, 289, 352, 364
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	110, 528
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	19, 38, 266
BslI	CCNNNNNNNGG	3 cut(s)	24, 106, 682
BsmAI	GTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	110, 528
Bsp143I	GATC	4 cut(s)	55, 540, 739, 790
BspACI	CCGC	4 cut(s)	70, 100, 272, 368
BspANI	GGCC	2 cut(s)	110, 528
BspCNI	CTCAG	3 cut(s)	325, 558, 702
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	63, 535, 734
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	4 cut(s)	55, 540, 739, 790
Bst4CI	ACNGT	4 cut(s)	163, 192, 261, 685
BstBAI	YACGTR	1 cut(s)	635
BstDEI	CTNAG	3 cut(s)	333, 545, 689
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	8 cut(s)	46, 97, 274, 286, 298, 322, 376, 609
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	4 cut(s)	58, 543, 742, 793
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	4 cut(s)	55, 540, 739, 790
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 308, 374, 386, 395, 743
BstSCI	CCNGG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	188, 289, 352, 364
BstX2I	RGATCY	2 cut(s)	55, 540
BstYI	RGATCY	2 cut(s)	55, 540
BsuRI	GGCC	2 cut(s)	110, 528
BtgI	CCRYGG	1 cut(s)	188
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	8 cut(s)	46, 97, 274, 286, 298, 322, 376, 609
BtsIMutI	CAGTG	1 cut(s)	553
CseI	GACGC	2 cut(s)	76, 317
Csp6I	GTAC	3 cut(s)	164, 657, 681
CviAII	CATG	3 cut(s)	217, 479, 628
CviJI	RGCY	8 cut(s)	37, 110, 235, 332, 377, 528, 695, 731
CviKI_1	RGCY	8 cut(s)	37, 110, 235, 332, 377, 528, 695, 731
CviQI	GTAC	3 cut(s)	164, 657, 681
DdeI	CTNAG	3 cut(s)	333, 545, 689
DpnI	GATC	4 cut(s)	57, 542, 741, 792
DpnII	GATC	4 cut(s)	55, 540, 739, 790
DraI	TTTAAA	2 cut(s)	256, 420
EaeI	YGGCCR	1 cut(s)	108
Eco72I	CACGTG	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	480
FaeI	CATG	3 cut(s)	220, 482, 631
FaiI	YATR	8 cut(s)	218, 246, 326, 480, 506, 600, 629, 648
FatI	CATG	3 cut(s)	216, 478, 627
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	177, 303, 366, 378
FokI	GGATG	8 cut(s)	53, 104, 281, 293, 305, 329, 383, 616
Fsp4HI	GCNGC	4 cut(s)	177, 303, 366, 378
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	4 cut(s)	177, 303, 366, 378
HaeIII	GGCC	2 cut(s)	110, 528
HapII	CCGG	3 cut(s)	19, 38, 266
HgaI	GACGC	2 cut(s)	76, 317
Hin1II	CATG	3 cut(s)	220, 482, 631
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	1 cut(s)	770
HpaII	CCGG	3 cut(s)	19, 38, 266
HphI	GGTGA	5 cut(s)	85, 255, 308, 362, 371
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	6 cut(s)	316, 429, 519, 584, 692, 781
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	2 cut(s)	212, 215
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	4 cut(s)	163, 192, 261, 685
HpyCH4IV	ACGT	2 cut(s)	153, 634
HpyCH4V	TGCA	5 cut(s)	176, 478, 513, 663, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 308, 374, 386, 395, 743
HpyF3I	CTNAG	3 cut(s)	333, 545, 689
HpySE526I	ACGT	2 cut(s)	153, 634
Hsp92II	CATG	3 cut(s)	220, 482, 631
Kzo9I	GATC	4 cut(s)	55, 540, 739, 790
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	32, 51, 217, 279, 408, 456, 743, 756, 780
Lsp1109I	GCAGC	4 cut(s)	188, 289, 352, 364
LweI	GCATC	4 cut(s)	259, 289, 352, 724
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	153, 634
MaeIII	GTNAC	2 cut(s)	261, 630
MalI	GATC	4 cut(s)	57, 542, 741, 792
MboI	GATC	4 cut(s)	55, 540, 739, 790
MflI	RGATCY	2 cut(s)	55, 540
MluCI	AATT	4 cut(s)	421, 482, 577, 585
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	2 cut(s)	255, 419
MspI	CCGG	3 cut(s)	19, 38, 266
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	480
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	6 cut(s)	116, 308, 374, 386, 395, 743
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	55, 540, 739, 790
NlaIII	CATG	3 cut(s)	220, 482, 631
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	261, 630
NsiI	ATGCAT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	770
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	178, 304, 367, 379
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	635
PspCI	CACGTG	1 cut(s)	635
PspN4I	GGNNCC	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	55, 540
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	3 cut(s)	165, 658, 682
RsaNI	GTAC	3 cut(s)	164, 657, 681
SaqAI	TTAA	2 cut(s)	255, 419
SatI	GCNGC	4 cut(s)	177, 303, 366, 378
Sau3AI	GATC	4 cut(s)	55, 540, 739, 790
ScaI	AGTACT	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	5 cut(s)	81, 156, 637, 646, 762
SfaNI	GCATC	4 cut(s)	259, 289, 352, 724
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	421, 482, 577, 585
SsiI	CCGC	4 cut(s)	70, 100, 272, 368
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	4 cut(s)	163, 192, 261, 685
TaiI	ACGT	2 cut(s)	156, 637
TaqI	TCGA	4 cut(s)	60, 81, 123, 135
TasI	AATT	4 cut(s)	421, 482, 577, 585
TatI	WGTACW	2 cut(s)	163, 656
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	2 cut(s)	255, 419
Tru9I	TTAA	2 cut(s)	255, 419
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	261, 630
TseI	GCWGC	4 cut(s)	176, 302, 365, 377
Tsp45I	GTSAC	2 cut(s)	261, 630
TspDTI	ATGAA	6 cut(s)	17, 495, 549, 616, 620, 740
TspRI	CASTG	1 cut(s)	553
Tth111I	GACNNNGTC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	421, 577
XspI	CTAG	1 cut(s)	654
ZrmI	AGTACT	1 cut(s)	658
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.