Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

944593 .. 945330

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATCAAGGAACTGCCAGTTACTCGAGAGTTGGAAATATATTTCGATGGAGTTATAAAAGAAGAAAAACCGGAAATGTATCCTACTATTTTGTTCTGGAACTGCTGTGGACTTGGTGACTCAGCCATATATATGCTAAAAGTTCTTATACAGATCTATGACCCTTCAATTATTTTCGTTATAGAGACTCGCTTGTCGTCTGAGGTTATGAAAGAAGTCTCTTCCTCACTAGGGTTTCATAATGTTTGGGATTCTCCTACAAGCAGAGGGGCAGCCGGTAAAGATAACTGTGTTGGTTTATCCATGTTATTGAGAACAAATGTAAATGTCGACTTTTTAAATAAGACAAGCAATTATCTTGATTTCGTGATTAACGTAAGTCCTACTGGTCAGAAGTGGAGGTTGACAGGATTCTATGGGGACCCAAAATTGAAGTACCGCTCATGGGAGTGGCTCCGAAGCTTATCAAAAATTGAGAAGGATCTCCCATGGATAATTTTTGGAGACTTTAATGAAATTTTATATCAGCATGAGAAAAATGGTGGACCGAAAAAGAGCAAATCAAAGATAAATGCATTCAAGAATGTCGTCAAAGAATGTGGTCTTTGTGATGACATGCCTTTTGAGGGTGGTTTACATTTACTTGGAGGAAAGATAACATTAAGCAGAGACTTGATAGAGGATTGGTCTCAGCGAAATGGAAAACAATATTTTCTTCTCCTAGGGTATTGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

245

Amino Acids

28.1

Weight (kDa)

6.83

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AasI	GACNNNNNNGTC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	516
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	231, 445, 626
AgsI	TTSAA	3 cut(s)	168, 433, 580
AluBI	AGCT	1 cut(s)	462
AluI	AGCT	1 cut(s)	462
Alw26I	GTCTC	5 cut(s)	179, 223, 498, 663, 693
AlwI	GGATC	1 cut(s)	489
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	516
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspA2I	CCTAGG	1 cut(s)	721
AspS9I	GGNCC	2 cut(s)	421, 545
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	421, 545
AvrII	CCTAGG	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	5 cut(s)	179, 223, 498, 663, 693
BfaI	CTAG	2 cut(s)	230, 722
BfuI	GTATCC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	1 cut(s)	273
BlnI	CCTAGG	1 cut(s)	721
BlsI	GCNGC	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	421, 545
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	421, 545
BmiI	GGNNCC	3 cut(s)	422, 423, 455
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	488, 721
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 445, 626
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	17, 391
BseDI	CCNNGG	2 cut(s)	488, 721
BseLI	CCNNNNNNNGG	3 cut(s)	231, 445, 626
BseMII	CTCAG	3 cut(s)	135, 192, 704
BseNI	ACTGG	2 cut(s)	17, 391
BseXI	GCAGC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	71, 276
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	231, 445, 626
BsmAI	GTCTC	5 cut(s)	179, 223, 498, 663, 693
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	575
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	3, 153, 481
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	1 cut(s)	439
BspCNI	CTCAG	3 cut(s)	134, 193, 703
BspLI	GGNNCC	3 cut(s)	422, 423, 455
BspPI	GGATC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	693
BsrBI	CCGCTC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	17, 391
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	488, 721
BssMI	GATC	3 cut(s)	3, 153, 481
BssT1I	CCWWGG	2 cut(s)	488, 721
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	121, 201, 690
BstDSI	CCRYGG	1 cut(s)	488
BstKTI	GATC	3 cut(s)	6, 156, 484
BstMAI	GTCTC	5 cut(s)	179, 223, 498, 663, 693
BstMBI	GATC	3 cut(s)	3, 153, 481
BstNSI	RCATGY	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	153, 481
BstYI	RGATCY	2 cut(s)	153, 481
BsuI	GTATCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	421, 545
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviAII	CATG	5 cut(s)	304, 444, 489, 530, 616
CviJI	RGCY	4 cut(s)	125, 275, 454, 462
CviKI_1	RGCY	4 cut(s)	125, 275, 454, 462
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	121, 201, 690
DpnI	GATC	3 cut(s)	5, 155, 483
DpnII	GATC	3 cut(s)	3, 153, 481
DraI	TTTAAA	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	488, 721
Eco31I	GGTCTC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	421, 545
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	488, 721
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	488, 721
FaeI	CATG	5 cut(s)	307, 447, 492, 533, 619
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	303, 443, 488, 529, 615
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	230, 722
GluI	GCNGC	1 cut(s)	273
HapII	CCGG	2 cut(s)	71, 276
Hin1II	CATG	5 cut(s)	307, 447, 492, 533, 619
HincII	GTYRAC	2 cut(s)	331, 405
HindII	GTYRAC	2 cut(s)	331, 405
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	4 cut(s)	119, 187, 251, 411
HpaII	CCGG	2 cut(s)	71, 276
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	5 cut(s)	110, 331, 405, 545, 635
Hpy188I	TCNGA	4 cut(s)	202, 393, 458, 737
Hpy188III	TCNNGA	5 cut(s)	26, 97, 359, 367, 580
Hpy8I	GTNNAC	5 cut(s)	110, 331, 405, 545, 635
HpyAV	CCTTC	2 cut(s)	174, 472
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	575, 732
HpyF3I	CTNAG	3 cut(s)	121, 201, 690
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	5 cut(s)	307, 447, 492, 533, 619
KflI	GGGWCCC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 153, 481
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	6 cut(s)	30, 82, 84, 289, 372, 393
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	230, 722
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	19, 116
MalI	GATC	3 cut(s)	5, 155, 483
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	3 cut(s)	3, 153, 481
MboII	GAAGA	3 cut(s)	74, 213, 707
MflI	RGATCY	2 cut(s)	153, 481
MluCI	AATT	6 cut(s)	168, 352, 428, 471, 495, 516
MlyI	GAGTC	2 cut(s)	113, 181
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	7 cut(s)	196, 235, 260, 393, 619, 641, 673
Mph1103I	ATGCAT	1 cut(s)	577
MseI	TTAA	4 cut(s)	338, 372, 510, 662
MslI	CAYNNNNRTG	2 cut(s)	131, 448
MspI	CCGG	2 cut(s)	71, 276
Mva1269I	GAATGC	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	3 cut(s)	3, 153, 481
NlaIII	CATG	5 cut(s)	307, 447, 492, 533, 619
NlaIV	GGNNCC	3 cut(s)	422, 423, 455
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	251, 411
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	2 cut(s)	113, 181
PpsI	GAGTC	2 cut(s)	113, 181
PpuMI	RGGWCCY	1 cut(s)	421
PsiI	TTATAA	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	422, 423, 455
PspPI	GGNCC	2 cut(s)	421, 545
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	153, 481
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	131, 448
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	338, 372, 510, 662
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	3, 153, 481
Sau96I	GGNCC	2 cut(s)	421, 545
SchI	GAGTC	2 cut(s)	113, 181
SetI	ASST	4 cut(s)	207, 378, 404, 464
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	421, 545
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	131, 448
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	6 cut(s)	168, 352, 428, 471, 495, 516
SsiI	CCGC	1 cut(s)	439
SspI	AATATT	1 cut(s)	710
SspMI	CTAG	2 cut(s)	230, 722
StyI	CCWWGG	2 cut(s)	488, 721
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	3 cut(s)	25, 45, 330
TaqII	GACCGA	1 cut(s)	562
TasI	AATT	6 cut(s)	168, 352, 428, 471, 495, 516
TfiI	GAWTC	2 cut(s)	251, 411
Tru1I	TTAA	4 cut(s)	338, 372, 510, 662
Tru9I	TTAA	4 cut(s)	338, 372, 510, 662
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	224, 227, 528
VpaK11BI	GGWCC	2 cut(s)	421, 545
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	24
XmaJI	CCTAGG	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	230, 722
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.