Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005329.1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Reverse (-)

119131 .. 120812

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005329.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggggcgatggtgaacttgctttcctttgcttctgatgtggaaactttatatcatacaacagaccttaccacagtgtctcatgtgagaagtcaaatgaggaatccgactagtccagatttctactttgacattacacagaatgttggacctcatatttttcaagtgaagtatattgcagtacacgacgaggataaaaagatagtgacgtatgaacggctagttactcttactatacgtcgtaatcttagtcaattattgttgaattgcatggccattcccaagccaagtcgagagtattgtgaccttgcaattccagaagagtttccaagtctttcttgtcaaaagaaaaatgtgcttaataatctttcggagtatcttgtgcaaacatggaagcagttagaagagaatgcatcattgattggacataatgtttttgaatatgatattagtcatattgctgaagaccaattaagtgaaggactaaataaccttgaagaaagaatgtttaaaacaaatagagacatcatgttgctgactcaaagattgagaccctggataaagttgattatagacaacgacagtgaaaaggagaagcttgcaaggagccaaaaccttccgacaatcccatgggcattagatctcccgtccgacagcaaaaccatgactatggtgtggcaggaggccagcccttatgaccaggtgccgcagagaacaagattgcaaaccgagaacgagaacgagattgcaaatcgagggtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.45

Weight (kDa)

5.22

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	703
AciI	CCGC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	164, 265, 440, 497
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	554, 699
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	1 cut(s)	598
AluI	AGCT	1 cut(s)	598
Alw26I	GTCTC	3 cut(s)	84, 516, 544
AoxI	GGCC	2 cut(s)	273, 684
ArsI	GACNNNNNNTTYG	1 cut(s)	743
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	471
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	2 cut(s)	556, 701
BcoDI	GTCTC	3 cut(s)	84, 516, 544
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	2 cut(s)	111, 221
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	1 cut(s)	707
BlsI	GCNGC	1 cut(s)	708
Bme1390I	CCNGG	2 cut(s)	556, 701
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	608, 705
BmrFI	CCNGG	2 cut(s)	556, 701
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	554, 629
BseBI	CCWGG	2 cut(s)	556, 701
BseDI	CCNNGG	2 cut(s)	554, 629
BshFI	GGCC	2 cut(s)	275, 686
BshNI	GGYRCC	1 cut(s)	703
BsmAI	GTCTC	3 cut(s)	84, 516, 544
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	275, 686
Bso31I	GGTCTC	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	640
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	2 cut(s)	275, 686
BspLI	GGNNCC	2 cut(s)	608, 705
BspT107I	GGYRCC	1 cut(s)	703
BspTNI	GGTCTC	1 cut(s)	544
BssECI	CCNNGG	2 cut(s)	554, 629
BssMI	GATC	1 cut(s)	640
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	556, 701
Bst4CI	ACNGT	2 cut(s)	76, 584
Bst6I	CTCTTC	2 cut(s)	315, 399
BstC8I	GCNNGC	2 cut(s)	600, 688
BstDEI	CTNAG	2 cut(s)	248, 762
BstDSI	CCRYGG	1 cut(s)	629
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	3 cut(s)	84, 516, 544
BstMBI	GATC	1 cut(s)	640
BstNI	CCWGG	2 cut(s)	556, 701
BstSCI	CCNGG	2 cut(s)	554, 699
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	275, 686
BtgI	CCRYGG	1 cut(s)	629
BtgZI	GCGATG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	81, 589
Cac8I	GCNNGC	2 cut(s)	600, 688
Cfr13I	GGNCC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	6 cut(s)	83, 271, 390, 529, 630, 664
CviJI	RGCY	7 cut(s)	220, 275, 286, 598, 609, 686, 690
CviKI_1	RGCY	7 cut(s)	220, 275, 286, 598, 609, 686, 690
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	2 cut(s)	248, 762
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	315, 399
EarI	CTCTTC	2 cut(s)	315, 399
Eco130I	CCWWGG	1 cut(s)	629
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	554, 699
EcoT14I	CCWWGG	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	6 cut(s)	86, 274, 393, 532, 633, 667
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FatI	CATG	6 cut(s)	82, 270, 389, 528, 629, 663
Fnu4HI	GCNGC	1 cut(s)	707
Fsp4HI	GCNGC	1 cut(s)	707
FspBI	CTAG	2 cut(s)	111, 221
GluI	GCNGC	1 cut(s)	707
HaeIII	GGCC	2 cut(s)	275, 686
Hin1II	CATG	6 cut(s)	86, 274, 393, 532, 633, 667
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	2 cut(s)	103, 538
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	16, 184
Hpy188I	TCNGA	5 cut(s)	37, 108, 373, 621, 652
Hpy188III	TCNNGA	3 cut(s)	116, 293, 317
Hpy8I	GTNNAC	2 cut(s)	16, 184
Hpy99I	CGWCG	2 cut(s)	191, 243
HpyAV	CCTTC	2 cut(s)	473, 626
HpyCH4III	ACNGT	2 cut(s)	76, 584
HpyCH4IV	ACGT	2 cut(s)	209, 238
HpyCH4V	TGCA	8 cut(s)	179, 270, 311, 385, 413, 602, 724, 749
HpyF3I	CTNAG	2 cut(s)	248, 762
HpySE526I	ACGT	2 cut(s)	209, 238
Hsp92II	CATG	6 cut(s)	86, 274, 393, 532, 633, 667
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	1 cut(s)	606
LpnPI	CCDG	8 cut(s)	129, 330, 541, 568, 665, 686, 700, 713
LweI	GCATC	1 cut(s)	422
MabI	ACCWGGT	1 cut(s)	699
MaeI	CTAG	2 cut(s)	111, 221
MaeII	ACGT	2 cut(s)	209, 238
MaeIII	GTNAC	3 cut(s)	205, 223, 302
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	4 cut(s)	332, 416, 476, 509
MflI	RGATCY	1 cut(s)	640
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	254, 265, 312, 470
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	4 cut(s)	127, 131, 644, 675
MnlI	CCTC	5 cut(s)	93, 162, 184, 676, 749
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	360, 473, 510
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	556, 701
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	2 cut(s)	556, 701
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	6 cut(s)	86, 274, 393, 532, 633, 667
NlaIV	GGNNCC	2 cut(s)	608, 705
NmuCI	GTSAC	2 cut(s)	205, 302
NsiI	ATGCAT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	708
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	554, 699
PspGI	CCWGG	2 cut(s)	554, 699
PspN4I	GGNNCC	2 cut(s)	608, 705
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	360, 473, 510
SatI	GCNGC	1 cut(s)	707
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	556, 701
SetI	ASST	9 cut(s)	69, 154, 212, 241, 309, 495, 600, 618, 705
SexAI	ACCWGGT	1 cut(s)	699
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	668
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	4 cut(s)	254, 265, 312, 470
SsiI	CCGC	1 cut(s)	707
SspMI	CTAG	2 cut(s)	111, 221
StyD4I	CCNGG	2 cut(s)	554, 699
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	2 cut(s)	76, 584
TaiI	ACGT	2 cut(s)	212, 241
TaqI	TCGA	2 cut(s)	292, 754
TasI	AATT	4 cut(s)	254, 265, 312, 470
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	360, 473, 510
Tru9I	TTAA	3 cut(s)	360, 473, 510
TscAI	CASTG	2 cut(s)	81, 589
TseFI	GTSAC	2 cut(s)	205, 302
Tsp45I	GTSAC	2 cut(s)	205, 302
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	81, 589
VpaK11BI	GGWCC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	111, 221
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.