Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

9408565 .. 9413315

Gene Structure 4751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAGAGAGACTTGCTTGGGTCGTGGAAAAAGGAGCCGGAAGTCGTGTTTGAGAATCTCGAATGGACGCGGGTGAAGATCGACCTAAAGGAACCTGACCGCGAAACGGCCATCACTCTCATCGAAGATGTGCTTCACAAAACCCAGGAAGAGGATGATAAGCCGCATGTACTCTTATTAATCGCCTACGCCGTCCGACAACAACTCTTTAAATCTAAGGAGATAGACGTGAAGATGATACAAAAACTTGCAGCGTGGCACCCACGGTGCGTCGAGATTGACGACGACTACACCGATTATGGCTGGGTGACGGCGTATGAAGATTTCAAACTGGACGCCAAGGAGGATGCTGATGATGATGATGATGATGCGGATGAGGGTTTCGATGAGTATGTGGACGACGATGAGGAGGAGGTAGCGGATGACGGAAATTTCAATGATGATTTTAAGGAGAGAGAAGCGGCCATGAAAAAGTTTAAAGGAGCAGGCATGATTGAATTGAAGCGACGGTGCGATATAATGGGATGCAGCCTGAAACAAGGCCAAGAGGACGAGATTCTTGATGAAATTATTTCATTCTTTTGCCATCAGAATTATATAATTTATAACGACTATAGTATGGAATTGTTCGTTGAACGTTTCATGTCGCGCGTCAAAGGTTATATTTCTAGTACTTGCACCCTCAATGACCCAAATACGGTGCGGGAAGCCCTTCAAACTGTGGAGAAGATGATTGAGTCTGATGCTGATGATCCTGTTGTTCATCAACAGGATACTGTACCAACTAATGAAGAAGGGAATGAATGCGAGATTGCGACCCCCTTCAACCTGCCAGAACAAGAAGAAATCTGCCTCACACCGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.5

Weight (kDa)

4.22

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	258
AccII	CGCG	4 cut(s)	70, 102, 649, 651
AciI	CCGC	8 cut(s)	70, 100, 164, 371, 419, 461, 703, 860
AclI	AACGTT	1 cut(s)	637
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	2 cut(s)	108, 462
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	3 cut(s)	171, 673, 780
AfiI	CCNNNNNNNGG	3 cut(s)	106, 151, 697
AgsI	TTSAA	7 cut(s)	328, 436, 497, 502, 635, 716, 826
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	3 cut(s)	108, 462, 541
ApeKI	GCWGC	2 cut(s)	251, 528
ApoI	RAATTY	1 cut(s)	430
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	85, 319
BanI	GGYRCC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	263, 540
BccI	CCATC	2 cut(s)	119, 594
BceAI	ACGGC	3 cut(s)	123, 176, 327
BciT130I	CCWGG	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	1 cut(s)	613
BfuAI	ACCTGC	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	4 cut(s)	164, 252, 462, 529
BlsI	GCNGC	4 cut(s)	165, 253, 463, 530
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	36, 93, 260
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	4 cut(s)	337, 358, 515, 733
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	144, 263, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 151, 697
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	144, 263, 339
BseGI	GGATG	5 cut(s)	160, 352, 379, 427, 530
BseLI	CCNNNNNNNGG	3 cut(s)	106, 151, 697
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	422, 425
BseXI	GCAGC	2 cut(s)	263, 540
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	4 cut(s)	70, 102, 649, 651
BshFI	GGCC	3 cut(s)	110, 464, 543
BshNI	GGYRCC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	106, 151, 697
BsmAI	GTCTC	1 cut(s)	3
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	3 cut(s)	110, 464, 543
Bsp143I	GATC	2 cut(s)	78, 751
BspACI	CCGC	8 cut(s)	70, 100, 164, 371, 419, 461, 703, 860
BspANI	GGCC	3 cut(s)	110, 464, 543
BspFNI	CGCG	4 cut(s)	70, 102, 649, 651
BspLI	GGNNCC	3 cut(s)	36, 93, 260
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	1 cut(s)	746
BspT107I	GGYRCC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	144, 263, 339
BssMI	GATC	2 cut(s)	78, 751
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	5 cut(s)	267, 510, 700, 721, 778
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	5 cut(s)	160, 352, 379, 427, 530
BstFNI	CGCG	4 cut(s)	70, 102, 649, 651
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	2 cut(s)	81, 754
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	2 cut(s)	78, 751
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	613
BstUI	CGCG	4 cut(s)	70, 102, 649, 651
BstV1I	GCAGC	2 cut(s)	263, 540
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	3 cut(s)	110, 464, 543
BtgI	CCRYGG	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	5 cut(s)	160, 352, 379, 427, 530
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	1 cut(s)	651
CseI	GACGC	4 cut(s)	76, 259, 344, 640
Csp6I	GTAC	3 cut(s)	170, 672, 779
CviAII	CATG	4 cut(s)	167, 466, 490, 643
CviJI	RGCY	8 cut(s)	37, 110, 163, 303, 464, 531, 543, 710
CviKI_1	RGCY	8 cut(s)	37, 110, 163, 303, 464, 531, 543, 710
CviQI	GTAC	3 cut(s)	170, 672, 779
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	80, 753
DpnII	GATC	2 cut(s)	78, 751
DraI	TTTAAA	2 cut(s)	211, 478
EaeI	YGGCCR	2 cut(s)	108, 462
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	4 cut(s)	170, 469, 493, 646
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	4 cut(s)	166, 465, 489, 642
FauI	CCCGC	2 cut(s)	63, 696
Fnu4HI	GCNGC	4 cut(s)	164, 252, 462, 529
FokI	GGATG	5 cut(s)	167, 359, 386, 434, 537
Fsp4HI	GCNGC	4 cut(s)	164, 252, 462, 529
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	4 cut(s)	164, 252, 462, 529
GsaI	CCCAGC	1 cut(s)	307
HaeIII	GGCC	3 cut(s)	110, 464, 543
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	4 cut(s)	76, 259, 344, 640
HhaI	GCGC	1 cut(s)	651
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	170, 469, 493, 646
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HinfI	GANTC	3 cut(s)	55, 556, 737
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	85, 319
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	197, 591, 742
Hpy188III	TCNNGA	3 cut(s)	59, 274, 560
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	4 cut(s)	275, 287, 404, 510
HpyAV	CCTTC	3 cut(s)	722, 788, 832
HpyCH4III	ACNGT	5 cut(s)	267, 510, 700, 721, 778
HpyCH4IV	ACGT	2 cut(s)	228, 637
HpyCH4V	TGCA	4 cut(s)	4, 251, 528, 678
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	228, 637
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	170, 469, 493, 646
HspAI	GCGC	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	78, 751
LmnI	GCTCC	2 cut(s)	34, 482
Lsp1109I	GCAGC	2 cut(s)	263, 540
LweI	GCATC	4 cut(s)	337, 358, 515, 733
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	228, 637
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	80, 753
MboI	GATC	2 cut(s)	78, 751
MboII	GAAGA	8 cut(s)	88, 137, 161, 244, 332, 739, 803, 854
MluCI	AATT	6 cut(s)	430, 497, 567, 592, 600, 623
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	145, 337, 370, 400, 403, 406, 541, 692, 863
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	4 cut(s)	179, 210, 447, 477
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	4 cut(s)	70, 102, 649, 651
NdeII	GATC	2 cut(s)	78, 751
NlaIII	CATG	4 cut(s)	170, 469, 493, 646
NlaIV	GGNNCC	3 cut(s)	36, 93, 260
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 279, 291
PctI	GAATGC	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	55, 556
PkrI	GCNGC	4 cut(s)	165, 253, 463, 530
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
PshBI	ATTAAT	1 cut(s)	179
PsiI	TTATAA	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	3 cut(s)	36, 93, 260
RsaI	GTAC	3 cut(s)	171, 673, 780
RsaNI	GTAC	3 cut(s)	170, 672, 779
SaqAI	TTAA	4 cut(s)	179, 210, 447, 477
SatI	GCNGC	4 cut(s)	164, 252, 462, 529
Sau3AI	GATC	2 cut(s)	78, 751
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	7 cut(s)	87, 97, 231, 417, 640, 661, 831
SfaNI	GCATC	4 cut(s)	337, 358, 515, 733
SfcI	CTRYAG	1 cut(s)	613
Sse9I	AATT	6 cut(s)	430, 497, 567, 592, 600, 623
SsiI	CCGC	8 cut(s)	70, 100, 164, 371, 419, 461, 703, 860
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	5 cut(s)	267, 510, 700, 721, 778
TaiI	ACGT	2 cut(s)	231, 640
TaqI	TCGA	5 cut(s)	60, 81, 123, 273, 384
TasI	AATT	6 cut(s)	430, 497, 567, 592, 600, 623
TatI	WGTACW	2 cut(s)	169, 671
TauI	GCSGC	2 cut(s)	166, 464
TfiI	GAWTC	2 cut(s)	55, 556
Tru1I	TTAA	4 cut(s)	179, 210, 447, 477
Tru9I	TTAA	4 cut(s)	179, 210, 447, 477
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	251, 528
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	8 cut(s)	333, 482, 564, 579, 631, 752, 804, 816
TspGWI	ACGGA	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.