Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

4348107 .. 4349588

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08222.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGAGGCATTCCAGATAGTCAGAAAGAAATGTGGTCTTCGTAATATGCTTTTTGAGGGTAGTAATTACACGTGGAAGAGAGGTAACATTAAGCAGAGGCTCGATAGAGGATTGATGACAATGAAATGGAAAAAAATGTTTCCTTCTCATAGGGTATTGCATCTAACAGATGGAGATATCTCAGATCACATTCCTATAGTGATACAAACCAATGGTCAAAAACATAAAGCAGAGAATCCGGGTGCTCTACTTGATGTGATGAAGCCTGTGTTTCAATTTGCTGAACGGTTGGAAAAGCGGTATCAATCTTTGACACTTGGGTTGACAACATTCTCTAATATTGTAAACGACATAAAACCGAACCGCCCCAACAATTTCTATTTTGAAATACTAAAGATGATTGCGCCTCAGGTCATTCATGGAACAGGTATTGCAATGCATGACACAAAAATTGGAACGGTTAGACATGAGCGTCTGGTTACACTAAAGACTTGTTATGGTCTTAGTTTCATATTATGGAATTGCATGGTCCTCCCTAAGTTAAGTGGAGATGACCTTGAAATTCCACCAGAGTGTCCCGGTGCTTCTTGTAAAGAAATCATCACAAAGGATGTTAATCTTTCAAAGTTTCTTGCGCAAACATGGGACATTGTATCGATGATTCCAACTAGCGGCAAAATAACCCGACAAGAGATTATCAAGCAAACGATAAATAAGCAAGTGGAAAATTCAATTAAGGAGCTGAAAGACTTGATTCCACAAAAGGATGATAAAAATTTTGTGATCGGCATGACAACTTCAGCATACCAAGATGCGAAAAGGATGAAATATGCAGGAATGATAGCAGAACTTGAGGAAAATCTTATTGAAAAGTTCACGGATTACCTTCCACCCAAGTCGGATGAGAACAAGCGAACAAAGCTTTACGTTACAGAACCTCTACAATATTTGTTGAACACTTTGAAGTGGCGAGAGGGTATTTCTAGATATAAAATTGATACAGAGGCAGCGGTGTTACGTGGGCTTCAAGATAGAAGGTTTAAAGCGGAGAGAAAAGCCTTGATGAGCAAAGATACGTTGCCCTTGATACGAAAAATAATAACAGGAAGCGGCGGCTTTATTGAATTAGAGAAGCTTAAGACGCTCATTAGAGATACATATACAACTGACGAGCTGACAATTCAAAAACAGATTGAAGTGCTATTACATATGGAGATTGTCAGTTTGGACGAGAATGTACTTGAGTTAGTAGAAGCTGACAAAAGTCCTATAGTTGATCGGCTTGTGAAGGCAGCAGATATAGCTTTGAAAAGTCTGAAAAACACAACGTCGAAGAAGGCTATGAAGTACCCAACTTACATAGATAAGATTACCAAGGCATACCAAAAAACGAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

467

Amino Acids

53.5

Weight (kDa)

9.4

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	471
Acc16I	TGCGCA	1 cut(s)	636
AciI	CCGC	7 cut(s)	298, 364, 672, 1010, 1046, 1110, 1113
AcsI	RAATTY	3 cut(s)	561, 727, 775
AcuI	CTGAAG	1 cut(s)	783
AcvI	CACGTG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	1239, 1349
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflII	CTTAAG	1 cut(s)	1136
AflIII	ACRYGT	1 cut(s)	69
AleI	CACNNNNGTG	1 cut(s)	571
AluBI	AGCT	6 cut(s)	742, 922, 1135, 1174, 1256, 1304
AluI	AGCT	6 cut(s)	742, 922, 1135, 1174, 1256, 1304
Alw21I	GWGCWC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	1007, 1292
ApoI	RAATTY	3 cut(s)	561, 727, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AspLEI	GCGC	2 cut(s)	406, 637
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	2 cut(s)	240, 579
AvaII	GGWCC	1 cut(s)	529
AxyI	CCTNAGG	1 cut(s)	408
BarI	GAAGNNNNNNTAC	2 cut(s)	1188, 1220
BbrPI	CACGTG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	1019, 1304
BccI	CCATC	1 cut(s)	164
BcnI	CCSGG	2 cut(s)	240, 579
BfaI	CTAG	2 cut(s)	669, 984
BfmI	CTRYAG	2 cut(s)	195, 1269
BfrI	CTTAAG	1 cut(s)	1136
BisI	GCNGC	5 cut(s)	673, 1008, 1111, 1114, 1293
BlsI	GCNGC	5 cut(s)	674, 1009, 1112, 1115, 1294
Bme1390I	CCNGG	2 cut(s)	240, 579
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmrFI	CCNGG	2 cut(s)	240, 579
BmsI	GCATC	2 cut(s)	169, 802
BoxI	GACNNNNGTC	1 cut(s)	1263
BpiI	GAAGAC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	872, 1262
BpuMI	CCSGG	2 cut(s)	240, 579
Bsa29I	ATCGAT	1 cut(s)	656
BsaAI	YACGTR	2 cut(s)	72, 1019
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	1374
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	1374
BseGI	GGATG	4 cut(s)	616, 772, 828, 907
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	195, 422
BseXI	GCAGC	2 cut(s)	1019, 1304
BshVI	ATCGAT	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	239, 579
BslFI	GGGAC	2 cut(s)	561, 659
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmFI	GGGAC	2 cut(s)	561, 659
BsmI	GAATGC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	184, 783, 1276
BspACI	CCGC	7 cut(s)	298, 364, 672, 1010, 1046, 1110, 1113
BspCNI	CTCAG	2 cut(s)	194, 421
BspDI	ATCGAT	1 cut(s)	656
BspTI	CTTAAG	1 cut(s)	1136
BsrDI	GCAATG	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	1374
BssMI	GATC	3 cut(s)	184, 783, 1276
BssT1I	CCWWGG	1 cut(s)	1374
Bst4CI	ACNGT	2 cut(s)	288, 460
Bst6I	CTCTTC	1 cut(s)	71
BstAFI	CTTAAG	1 cut(s)	1136
BstBAI	YACGTR	2 cut(s)	72, 1019
BstDEI	CTNAG	4 cut(s)	181, 408, 503, 537
BstF5I	GGATG	4 cut(s)	616, 772, 828, 907
BstHHI	GCGC	2 cut(s)	406, 637
BstKTI	GATC	3 cut(s)	187, 786, 1279
BstMBI	GATC	3 cut(s)	184, 783, 1276
BstMWI	GCNNNNNNNGC	3 cut(s)	919, 1141, 1301
BstPAI	GACNNNNGTC	1 cut(s)	1263
BstSCI	CCNGG	2 cut(s)	238, 577
BstSFI	CTRYAG	2 cut(s)	195, 1269
BstV1I	GCAGC	2 cut(s)	1019, 1304
BstV2I	GAAGAC	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	656
Bsu36I	CCTNAGG	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	656
BtsCI	GGATG	4 cut(s)	616, 772, 828, 907
CfoI	GCGC	2 cut(s)	406, 637
Cfr13I	GGNCC	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	656
CseI	GACGC	2 cut(s)	461, 1150
Csp6I	GTAC	2 cut(s)	1238, 1348
CviAII	CATG	6 cut(s)	419, 440, 467, 526, 642, 790
CviQI	GTAC	2 cut(s)	1238, 1348
DdeI	CTNAG	4 cut(s)	181, 408, 503, 537
DpnI	GATC	3 cut(s)	186, 785, 1278
DpnII	GATC	3 cut(s)	184, 783, 1276
DraI	TTTAAA	1 cut(s)	1042
DrdI	GACNNNNNNGTC	1 cut(s)	471
DseDI	GACNNNNNNGTC	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	1374
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	783
Eco72I	CACGTG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	1374
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	1374
FaeI	CATG	6 cut(s)	422, 443, 470, 529, 645, 793
FaqI	GGGAC	2 cut(s)	561, 659
FatI	CATG	6 cut(s)	418, 439, 466, 525, 641, 789
FauNDI	CATATG	1 cut(s)	1209
Fnu4HI	GCNGC	5 cut(s)	673, 1008, 1111, 1114, 1293
FokI	GGATG	4 cut(s)	623, 779, 835, 914
Fsp4HI	GCNGC	5 cut(s)	673, 1008, 1111, 1114, 1293
FspBI	CTAG	2 cut(s)	669, 984
FspI	TGCGCA	1 cut(s)	636
GlaI	GCGC	2 cut(s)	405, 636
GluI	GCNGC	5 cut(s)	673, 1008, 1111, 1114, 1293
HapII	CCGG	2 cut(s)	239, 579
HgaI	GACGC	2 cut(s)	461, 1150
HhaI	GCGC	2 cut(s)	406, 637
Hin1II	CATG	6 cut(s)	422, 443, 470, 529, 645, 793
Hin6I	GCGC	2 cut(s)	404, 635
HinP1I	GCGC	2 cut(s)	404, 635
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	2 cut(s)	920, 1133
HinfI	GANTC	3 cut(s)	235, 661, 754
HpaII	CCGG	2 cut(s)	239, 579
Hpy166II	GTNNAC	3 cut(s)	324, 346, 876
Hpy188I	TCNGA	4 cut(s)	23, 184, 901, 1317
Hpy188III	TCNNGA	3 cut(s)	13, 984, 1028
Hpy8I	GTNNAC	3 cut(s)	324, 346, 876
Hpy99I	CGWCG	1 cut(s)	1333
HpyAV	CCTTC	6 cut(s)	153, 896, 1029, 1282, 1330, 1387
HpyCH4III	ACNGT	2 cut(s)	288, 460
HpyCH4IV	ACGT	5 cut(s)	71, 927, 1018, 1076, 1328
HpyCH4V	TGCA	5 cut(s)	160, 434, 439, 525, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	919, 1141, 1301
HpyF3I	CTNAG	4 cut(s)	181, 408, 503, 537
HpySE526I	ACGT	5 cut(s)	71, 927, 1018, 1076, 1328
Hsp92II	CATG	6 cut(s)	422, 443, 470, 529, 645, 793
HspAI	GCGC	2 cut(s)	404, 635
Kzo9I	GATC	3 cut(s)	184, 783, 1276
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	2 cut(s)	1019, 1304
LweI	GCATC	2 cut(s)	169, 802
MaeI	CTAG	2 cut(s)	669, 984
MaeII	ACGT	5 cut(s)	71, 927, 1018, 1076, 1328
MaeIII	GTNAC	4 cut(s)	83, 478, 928, 1014
MalI	GATC	3 cut(s)	186, 785, 1278
MboI	GATC	3 cut(s)	184, 783, 1276
MboII	GAAGA	3 cut(s)	29, 88, 1345
MhlI	GDGCHC	1 cut(s)	247
MmeI	TCCRAC	3 cut(s)	270, 689, 879
Mph1103I	ATGCAT	1 cut(s)	441
MseI	TTAA	7 cut(s)	90, 542, 615, 735, 1041, 1137, 1399
MslI	CAYNNNNRTG	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	1010
MspCI	CTTAAG	1 cut(s)	1136
MspI	CCGG	2 cut(s)	239, 579
MspR9I	CCNGG	2 cut(s)	240, 579
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	919, 1141, 1301
NciI	CCSGG	2 cut(s)	240, 579
NdeI	CATATG	1 cut(s)	1209
NdeII	GATC	3 cut(s)	184, 783, 1276
NlaIII	CATG	6 cut(s)	422, 443, 470, 529, 645, 793
NsbI	TGCGCA	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	441
OliI	CACNNNNGTG	1 cut(s)	571
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	235, 661, 754
PkrI	GCNGC	5 cut(s)	674, 1009, 1112, 1115, 1294
PmaCI	CACGTG	1 cut(s)	72
PmlI	CACGTG	1 cut(s)	72
Ppu21I	YACGTR	2 cut(s)	72, 1019
PshAI	GACNNNNGTC	1 cut(s)	1263
PspCI	CACGTG	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	529
RsaI	GTAC	2 cut(s)	1239, 1349
RsaNI	GTAC	2 cut(s)	1238, 1348
RseI	CAYNNNNRTG	1 cut(s)	571
SaqAI	TTAA	7 cut(s)	90, 542, 615, 735, 1041, 1137, 1399
SatI	GCNGC	5 cut(s)	673, 1008, 1111, 1114, 1293
Sau3AI	GATC	3 cut(s)	184, 783, 1276
Sau96I	GGNCC	1 cut(s)	529
ScrFI	CCNGG	2 cut(s)	240, 579
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	169, 802
SfcI	CTRYAG	2 cut(s)	195, 1269
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	3 cut(s)	851, 1136, 1241
SmoI	CTYRAG	3 cut(s)	851, 1136, 1241
SsiI	CCGC	7 cut(s)	298, 364, 672, 1010, 1046, 1110, 1113
SspI	AATATT	2 cut(s)	340, 947
SspMI	CTAG	2 cut(s)	669, 984
StyD4I	CCNGG	2 cut(s)	238, 577
StyI	CCWWGG	1 cut(s)	1374
TaaI	ACNGT	2 cut(s)	288, 460
TaiI	ACGT	5 cut(s)	74, 930, 1021, 1079, 1331
TaqI	TCGA	3 cut(s)	102, 656, 1331
TatI	WGTACW	1 cut(s)	1237
TauI	GCSGC	3 cut(s)	675, 1113, 1116
TfiI	GAWTC	3 cut(s)	235, 661, 754
Tru1I	TTAA	7 cut(s)	90, 542, 615, 735, 1041, 1137, 1399
Tru9I	TTAA	7 cut(s)	90, 542, 615, 735, 1041, 1137, 1399
TseI	GCWGC	2 cut(s)	1007, 1292
TspDTI	ATGAA	6 cut(s)	137, 275, 407, 499, 839, 1358
TspGWI	ACGGA	1 cut(s)	893
Vha464I	CTTAAG	1 cut(s)	1136
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	3 cut(s)	561, 727, 775
XbaI	TCTAGA	1 cut(s)	983
XspI	CTAG	2 cut(s)	669, 984
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.