Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001839

Physical Location & Seq

Genomic Coordinates Forward (+)

39643228 .. 39646957

Gene Structure 3730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGAGAGACTTGATATTGATGTGGAAAAAAGAGCCCGACGCCGTATTTGAGAATCTCCAGAGGACGCGGGTGATGGTCAAACTTGAGGGTGGTGATCGGGATGAAGCCATCATTGCCATCGCAGGTGTCCTCAAACAGATCAAAGAAGATGCTAAGCGAAGTGTACTCTTATCAATCGCCTACGCCGTCCAACAGGAACTCTATAAATCGAAGGAGATCGACGTGGAGACGATGAAAAAGGTTGCATCCTATTACCCACTGTGCGTGGAGATTGATGATGACAATCTCGATGAAGACTGGATAACGGCCTATAATGATTTTAAATTGAAACCGGAGGAGGAAGAGGAGGAGGCTGTTGATGCGGATGAAGATGATGTTAACTCCTCATCGGATGCGGAGGCGGATGAGGCTGTTGATGAGGATGGAGATGTGGACGACGGTGAGGATGAAGATGTGGACGACGAGGACTGGGACTTTGAGGATGTGGACGAGGACGATCCTGAGGAGTTTAAAGAAAGAGGCATGAATGAAATAAAGAAGCAGTGCCACAGGATGGGATGCAGTCTGAAGAAAGGCCAAGAGGAGGAAATTCTCGGTGCCATGATTTCATTCTTCAGAGAAAAAAAATTCAAAATTTATGACGAATATACAATGAAAACAGTTGCTGAAGCCTTCATGTCACGTGTTAAAGGTTATATTTCCAGTACTTGCATCCTCAACGACCCAAATACTGTGATCAATGCTCTTAAAAATGTGGAGATTAGGGCTGATGATTATGCTGTTCATGCTTATCAACAGTTGGAGGAAAAGAATACCATACCAACTAATGCAGAAGGGATTGAATGCGGGATTGCGACCCCCTTTAACCTGCCAGAACAAGAAGAAATCTGCCTCACACCGCCAGAATGTGAAAATACGATAACTGAAGACTGCTGGTCTGCGACTCCTATGAACCGGCCAGAACAAGAAGCAGAAAATATGGTCGATGTTAATTTAAGCCTCACACCACCGGGAGGAGGTATGAAAACTGAAGAATGTACGACTAGGGCCGGGTCTAAGAGAAAGCTCGCTCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

40.9

Weight (kDa)

4.21

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08221 FvH4_1g08222 FvH4_2g30342 FvH4_2g30381 FvH4_2g30381 FvH4_5g02241 FvH4_5g16511 FvH4_5g16530 FvH4_5g16530 FvH4_5g16530 FvH4_5g16550 FvH4_6g40845 FvH4_6g54220 FvH4_6g54230 FvH4_6g54241 FvH4_6g54250
rosa_chinensis	RchiOBHm_Chr7g0179571
rosa_laevigata	RLG00000005342
rosa_multiflora	Rmu_sc0005329.1_g000009 Rmu_sc0005329.1_g000013 Rmu_sc0005329.1_g000021 Rmu_sc0009881.1_g000006 Rmu_sc0014842.1_g000006
rosa_roxburghii	Rroxscaffold_155G00443920 Rroxscaffold_155G00443930 Rroxscaffold_3G00273650 Rroxscaffold_3G00273700 Rroxscaffold_3G00274960
rosa_rugosa	Rorug06G0425700 Rorug06G0425800 Rorug06G0425900 Rorug06G0426000 Rorug06G0426200
rosa_samantha	Rh7AG015300 Rh7AG025400 Rh7AG025500 Rh7AG025600 Rh7BG014800 Rh7BG014900 Rh7BG024900 Rh7CG015500 Rh7CG015600 Rh7CG026200 Rh7CG026400 Rh7CG026600
rosa_wichuraiana	Rw7G002040 Rw7G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
Acc36I	ACCTGC	2 cut(s)	116, 879
AccB1I	GGYRCC	1 cut(s)	599
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccII	CGCG	1 cut(s)	70
AciI	CCGC	6 cut(s)	70, 365, 398, 404, 849, 902
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	3 cut(s)	591, 629, 636
AcuI	CTGAAG	5 cut(s)	590, 601, 690, 948, 1053
AcvI	CACGTG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	168, 709, 1042
AfiI	CCNNNNNNNGG	4 cut(s)	556, 586, 1016, 1019
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	3 cut(s)	331, 634, 845
AhdI	GACNNNNNGTC	1 cut(s)	937
AjiI	CACGTC	1 cut(s)	226
AluBI	AGCT	2 cut(s)	1069, 1078
AluI	AGCT	2 cut(s)	1069, 1078
Alw26I	GTCTC	2 cut(s)	3, 224
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	4 cut(s)	309, 577, 959, 1050
ApoI	RAATTY	3 cut(s)	591, 629, 636
ArsI	GACNNNNNNTTYG	4 cut(s)	32, 64, 461, 493
AspS9I	GGNCC	1 cut(s)	1050
AsuC2I	CCSGG	2 cut(s)	1014, 1054
AsuHPI	GGTGA	3 cut(s)	85, 107, 455
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	39
BbrPI	CACGTG	1 cut(s)	686
BbsI	GAAGAC	2 cut(s)	303, 936
BccI	CCATC	5 cut(s)	70, 119, 128, 419, 550
BceAI	ACGGC	3 cut(s)	29, 173, 324
BclI	TGATCA	1 cut(s)	738
BcnI	CCSGG	2 cut(s)	1014, 1054
BcoDI	GTCTC	2 cut(s)	3, 224
BfaI	CTAG	1 cut(s)	1047
BfuAI	ACCTGC	2 cut(s)	116, 879
BlpI	GCTNAGC	2 cut(s)	156, 1074
BmcAI	AGTACT	1 cut(s)	709
Bme1390I	CCNGG	2 cut(s)	1014, 1054
BmeRI	GACNNNNNGTC	1 cut(s)	937
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	1050
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	2 cut(s)	1014, 1054
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	6 cut(s)	142, 257, 352, 385, 551, 723
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	303, 936
BpmI	CTGGAG	1 cut(s)	44
Bpu1102I	GCTNAGC	2 cut(s)	156, 1074
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	1014, 1054
BsaAI	YACGTR	1 cut(s)	686
BsaBI	GATNNNNATC	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	4 cut(s)	556, 586, 1016, 1019
Bse118I	RCCGGY	1 cut(s)	957
Bse1I	ACTGG	3 cut(s)	305, 476, 705
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	556, 586, 1016, 1019
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	3 cut(s)	305, 476, 705
BseRI	GAGGAG	7 cut(s)	353, 362, 365, 376, 521, 599, 1032
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	311, 579, 961, 1052
BshNI	GGYRCC	1 cut(s)	599
BsiSI	CCGG	4 cut(s)	335, 958, 1013, 1053
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	4 cut(s)	556, 586, 1016, 1019
BsmAI	GTCTC	2 cut(s)	3, 224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	851
BsnI	GGCC	4 cut(s)	311, 579, 961, 1052
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	5 cut(s)	97, 141, 219, 499, 738
Bsp1720I	GCTNAGC	2 cut(s)	156, 1074
BspACI	CCGC	6 cut(s)	70, 365, 398, 404, 849, 902
BspANI	GGCC	4 cut(s)	311, 579, 961, 1052
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	601
BspMI	ACCTGC	2 cut(s)	116, 879
BspPI	GGATC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	957
BsrI	ACTGG	3 cut(s)	305, 476, 705
BssAI	RCCGGY	1 cut(s)	957
BssMI	GATC	5 cut(s)	97, 141, 219, 499, 738
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	5 cut(s)	264, 443, 664, 736, 801
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	4 cut(s)	156, 504, 1059, 1074
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	5 cut(s)	100, 144, 222, 502, 741
BstMAI	GTCTC	2 cut(s)	3, 224
BstMBI	GATC	5 cut(s)	97, 141, 219, 499, 738
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 362, 410, 788, 1075
BstSCI	CCNGG	2 cut(s)	1012, 1052
BstUI	CGCG	1 cut(s)	70
BstV2I	GAAGAC	2 cut(s)	303, 936
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	4 cut(s)	311, 579, 961, 1052
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	2 cut(s)	260, 551
BveI	ACCTGC	2 cut(s)	116, 879
Cac8I	GCNNGC	1 cut(s)	1071
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	1050
CseI	GACGC	2 cut(s)	50, 76
Csp6I	GTAC	3 cut(s)	167, 708, 1041
CviAII	CATG	4 cut(s)	526, 604, 679, 788
CviQI	GTAC	3 cut(s)	167, 708, 1041
DdeI	CTNAG	4 cut(s)	156, 504, 1059, 1074
DpnI	GATC	5 cut(s)	99, 143, 221, 501, 740
DpnII	GATC	5 cut(s)	97, 141, 219, 499, 738
DraI	TTTAAA	2 cut(s)	325, 514
DriI	GACNNNNNGTC	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	937
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	39
Eco57I	CTGAAG	5 cut(s)	590, 601, 690, 948, 1053
Eco72I	CACGTG	1 cut(s)	686
Eco81I	CCTNAGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	4 cut(s)	529, 607, 682, 791
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	525, 603, 678, 787
FauI	CCCGC	2 cut(s)	63, 842
FbaI	TGATCA	1 cut(s)	738
FriOI	GRGCYC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	1047
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	311, 579, 961, 1052
HapII	CCGG	4 cut(s)	335, 958, 1013, 1053
HgaI	GACGC	2 cut(s)	50, 76
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	529, 607, 682, 791
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	55, 946
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	4 cut(s)	335, 958, 1013, 1053
HphI	GGTGA	3 cut(s)	85, 107, 455
Hpy166II	GTNNAC	5 cut(s)	167, 382, 436, 460, 490
Hpy188I	TCNGA	3 cut(s)	394, 570, 620
Hpy188III	TCNNGA	4 cut(s)	61, 101, 290, 503
Hpy8I	GTNNAC	5 cut(s)	167, 382, 436, 460, 490
Hpy99I	CGWCG	4 cut(s)	44, 227, 443, 467
HpyAV	CCTTC	3 cut(s)	208, 685, 830
HpyCH4III	ACNGT	5 cut(s)	264, 443, 664, 736, 801
HpyCH4IV	ACGT	2 cut(s)	225, 685
HpyCH4V	TGCA	4 cut(s)	248, 564, 714, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 362, 410, 788, 1075
HpyF3I	CTNAG	4 cut(s)	156, 504, 1059, 1074
HpySE526I	ACGT	2 cut(s)	225, 685
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	529, 607, 682, 791
Ksp22I	TGATCA	1 cut(s)	738
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	97, 141, 219, 499, 738
LweI	GCATC	6 cut(s)	142, 257, 352, 385, 551, 723
MaeI	CTAG	1 cut(s)	1047
MaeII	ACGT	2 cut(s)	225, 685
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	5 cut(s)	99, 143, 221, 501, 740
MboI	GATC	5 cut(s)	97, 141, 219, 499, 738
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	326, 591, 629, 636, 994
MlyI	GAGTC	1 cut(s)	940
MmeI	TCCRAC	2 cut(s)	217, 783
MseI	TTAA	8 cut(s)	324, 381, 513, 690, 750, 867, 993, 998
MspI	CCGG	4 cut(s)	335, 958, 1013, 1053
MspR9I	CCNGG	2 cut(s)	1014, 1054
Mva1269I	GAATGC	1 cut(s)	851
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	5 cut(s)	116, 362, 410, 788, 1075
NciI	CCSGG	2 cut(s)	1014, 1054
NdeII	GATC	5 cut(s)	97, 141, 219, 499, 738
NlaIII	CATG	4 cut(s)	529, 607, 682, 791
NlaIV	GGNNCC	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	681
PaqCI	CACCTGC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	1 cut(s)	851
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	556
PleI	GAGTC	1 cut(s)	940
PmaCI	CACGTG	1 cut(s)	686
PmlI	CACGTG	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	940
Ppu21I	YACGTR	1 cut(s)	686
PspCI	CACGTG	1 cut(s)	686
PspN4I	GGNNCC	1 cut(s)	601
PspPI	GGNCC	1 cut(s)	1050
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	168, 709, 1042
RsaNI	GTAC	3 cut(s)	167, 708, 1041
SaqAI	TTAA	8 cut(s)	324, 381, 513, 690, 750, 867, 993, 998
Sau3AI	GATC	5 cut(s)	97, 141, 219, 499, 738
Sau96I	GGNCC	1 cut(s)	1050
ScaI	AGTACT	1 cut(s)	709
SchI	GAGTC	1 cut(s)	940
ScrFI	CCNGG	2 cut(s)	1014, 1054
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	9 cut(s)	130, 228, 246, 688, 697, 873, 1024, 1071, 1080
SfaNI	GCATC	6 cut(s)	142, 257, 352, 385, 551, 723
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	326, 591, 629, 636, 994
SsiI	CCGC	6 cut(s)	70, 365, 398, 404, 849, 902
SspMI	CTAG	1 cut(s)	1047
StyD4I	CCNGG	2 cut(s)	1012, 1052
TaaI	ACNGT	5 cut(s)	264, 443, 664, 736, 801
TaiI	ACGT	2 cut(s)	228, 688
TaqI	TCGA	4 cut(s)	212, 222, 291, 987
TasI	AATT	5 cut(s)	326, 591, 629, 636, 994
TatI	WGTACW	2 cut(s)	166, 707
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	8 cut(s)	324, 381, 513, 690, 750, 867, 993, 998
Tru9I	TTAA	8 cut(s)	324, 381, 513, 690, 750, 867, 993, 998
TscAI	CASTG	2 cut(s)	267, 551
TseFI	GTSAC	1 cut(s)	681
Tsp45I	GTSAC	1 cut(s)	681
TspRI	CASTG	2 cut(s)	267, 551
Van91I	CCANNNNNTGG	1 cut(s)	556
XapI	RAATTY	3 cut(s)	591, 629, 636
XspI	CTAG	1 cut(s)	1047
ZrmI	AGTACT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.