RchiOBHm_Chr7g0179571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001839
Physical Location & Seq
Reverse (-)
1834283 .. 1834663
381 bp
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UTR
Exon/CDS
Intron
PRQ16007

Sequence Viewer

Length: 381 bp
ATGGAGAAGGCAAAGGTTGCAGAACCGACAGAAGAAGACATGATGGAGTTGTTGAAATATTGCAGTGAAATGGGATGCAGTTTGAAACAATGCCAAGACCAGAACATCCTCAATCGGATGATTTCTTTCATAAGCAATTCTGATTGTTTTACAGGATTCTCATCTGATGAATATGATAGGAGCGTCTGCATCAAAATTTTCATGGAAAAGGTCGACGCCTATCTCTTGAGTTGTTGCACCCTCACCGACTTTGGGACTGTGAACTGCGCCATTGAGACGGTGGAGTCCGAGGACAAAAAAGAACAAGAAGATTTGCAAAAGATGCGGGAGAGCAGAGCCAACAGAATGGTACCTACTACAGCCAAACCTATAGTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.37

Weight (kDa)

4.59

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
Acc65I GGTACC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 213
AciI CCGC 1 cut(s) 325
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 2 cut(s) 55, 85
Alw26I GTCTC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 195
Asp718I GGTACC 1 cut(s) 349
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 235
BanI GGYRCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 357, 369
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 3 cut(s) 65, 198, 312
BpiI GAAGAC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 3 cut(s) 80, 105, 123
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 349
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 269
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 268
BspACI CCGC 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 288
BssNI GRCGYC 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 259, 280
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 2 cut(s) 17, 322
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 80, 105, 123
BstHHI GCGC 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 17, 322
BstSFI CTRYAG 2 cut(s) 357, 369
BstV2I GAAGAC 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 346
BtsCI GGATG 3 cut(s) 80, 105, 123
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
CfoI GCGC 1 cut(s) 269
CseI GACGC 2 cut(s) 172, 224
Csp6I GTAC 1 cut(s) 350
CviAII CATG 2 cut(s) 40, 202
CviJI RGCY 2 cut(s) 338, 362
CviKI_1 RGCY 2 cut(s) 338, 362
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 378
DrdI GACNNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 2 cut(s) 43, 205
FaiI YATR 5 cut(s) 41, 131, 174, 203, 371
FaqI GGGAC 1 cut(s) 268
FatI CATG 2 cut(s) 39, 201
FauI CCCGC 1 cut(s) 318
FblI GTMKAC 1 cut(s) 213
FokI GGATG 3 cut(s) 87, 92, 130
GlaI GCGC 1 cut(s) 268
HgaI GACGC 2 cut(s) 172, 224
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 43, 205
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 156, 284
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 214, 262
Hpy188I TCNGA 4 cut(s) 117, 142, 166, 289
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 214, 262
Hpy99I CGWCG 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 259, 280
HpyCH4V TGCA 6 cut(s) 20, 63, 78, 189, 237, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 322
HpyF3I CTNAG 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 43, 205
HspAI GCGC 1 cut(s) 267
KpnI GGTACC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 2 cut(s) 113, 138
LweI GCATC 3 cut(s) 65, 198, 312
MboII GAAGA 3 cut(s) 44, 47, 320
MluCI AATT 2 cut(s) 136, 195
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 3 cut(s) 119, 251, 283
MwoI GCNNNNNNNGC 2 cut(s) 17, 322
NlaIII CATG 2 cut(s) 43, 205
NlaIV GGNNCC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 156
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SalI GTCGAC 1 cut(s) 212
SchI GAGTC 1 cut(s) 293
SetI ASST 4 cut(s) 18, 213, 355, 370
SfaNI GCATC 3 cut(s) 65, 198, 312
SfcI CTRYAG 2 cut(s) 357, 369
SgeI CNNG 9 cut(s) 52, 107, 112, 165, 214, 238, 301, 317, 338
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 2 cut(s) 136, 195
SsiI CCGC 1 cut(s) 325
SspI AATATT 1 cut(s) 59
TaaI ACNGT 2 cut(s) 259, 280
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 136, 195
TfiI GAWTC 1 cut(s) 156
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 118, 183, 190
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.