Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

5714634 .. 5715398

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACGAACCAATCTGAAGGAACAAATAAGAGGGACTTTAGCACGGCCATTCTCAACCGCAAGAAGGCTCCAAACCGCCTTATTGTGGATGAAGCTGTGGAGGATGATAACTCCGTCGTCCAACTCCACCCGGAGACCATGGAGAAGCTCCAGCTCTTTCGTGGCGATACGGTCCTGATCAAGGGAAAGAAGAGGAGAGATACAATTTGTATTGCTTTAGCTGATGATTCCTGTGAAGGACCAAAGATAAGGATGAACAAGGTTGTGAGGAACAACCTAAGGGTTAGGCTAGGTGATGTTGTTTCCATTCACCAGTGCGCTGATGTCAAGTATGGAAAGCGTGTCCACATTCTCCCAATAGATGATACCATTGAAGGCATGACTGGAAATCTGTTTGATGTCTACTTGAGGCCTTATTTCCAAGAGGACTACCGCCCGGTGAGGAAAAGTGACCTTTTCCTAGTCAGAGGAGGAATGAGGAGTGTAGAGTTTAAGGTTGTTGAGACTGACCCGGCTGAGTACTGTGTGGTTGCTCCAGACACCGAAATCTTCTGCGAGGGTGAACCTGTTAGAAGGGAGGATGAGGAGAGATTAGATGAGGTAGGGTATGATGATATCGGTGGTGTTAGGAAACAGATGGCTCAGATTCGCGAATTGGTTGAGCTGCCTCTGAGGCATCCTCAGTTGTTTAAATCGATTGGTGTCAAGCCACCAAAGGGTATTCTTCTCTATGGTCCTCCTGGAACCGGCAAGAGCTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

255

Amino Acids

28.82

Weight (kDa)

6.47

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	26 - 107	6.6e-23	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	128 - 191	1.4e-10	Cell division protein 48 (CDC48), domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	651
AciI	CCGC	3 cut(s)	58, 76, 433
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	5 cut(s)	64, 85, 181, 716, 746
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	6 cut(s)	95, 148, 154, 221, 664, 756
AluI	AGCT	6 cut(s)	95, 148, 154, 221, 664, 756
Alw26I	GTCTC	2 cut(s)	128, 497
AoxI	GGCC	2 cut(s)	45, 410
ApeKI	GCWGC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	3 cut(s)	172, 239, 734
AsuC2I	CCSGG	3 cut(s)	131, 437, 512
AsuHPI	GGTGA	4 cut(s)	302, 305, 451, 572
AvaII	GGWCC	3 cut(s)	172, 239, 734
AxyI	CCTNAGG	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	651
BccI	CCATC	1 cut(s)	631
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	741
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	3 cut(s)	131, 437, 512
BcoDI	GTCTC	2 cut(s)	128, 497
BfaI	CTAG	2 cut(s)	290, 461
BglI	GCCNNNNNGGC	1 cut(s)	673
BisI	GCNGC	1 cut(s)	665
BlsI	GCNGC	1 cut(s)	666
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	4 cut(s)	131, 437, 512, 741
Bme18I	GGWCC	3 cut(s)	172, 239, 734
BmgT120I	GGNCC	3 cut(s)	172, 239, 734
BmiI	GGNNCC	2 cut(s)	69, 745
BmrFI	CCNGG	4 cut(s)	131, 437, 512, 741
BmsI	GCATC	1 cut(s)	685
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BpmI	CTGGAG	2 cut(s)	134, 519
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	3 cut(s)	131, 437, 512
Bsa29I	ATCGAT	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 85, 181, 716, 746
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	313, 388
Bse21I	CCTNAGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	741
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	5 cut(s)	94, 109, 258, 586, 676
BseLI	CCNNNNNNNGG	5 cut(s)	64, 85, 181, 716, 746
BseMII	CTCAG	4 cut(s)	507, 656, 662, 695
BseNI	ACTGG	2 cut(s)	313, 388
BseRI	GAGGAG	4 cut(s)	208, 483, 493, 599
BseXI	GCAGC	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	651
BshFI	GGCC	2 cut(s)	47, 412
BshVI	ATCGAT	1 cut(s)	695
BsiSI	CCGG	4 cut(s)	131, 437, 512, 747
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	5 cut(s)	64, 85, 181, 716, 746
BsmAI	GTCTC	2 cut(s)	128, 497
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	47, 412
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	138
Bsp68I	TCGCGA	1 cut(s)	651
BspACI	CCGC	3 cut(s)	58, 76, 433
BspANI	GGCC	2 cut(s)	47, 412
BspCNI	CTCAG	4 cut(s)	508, 655, 663, 694
BspDI	ATCGAT	1 cut(s)	695
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	2 cut(s)	69, 745
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	2 cut(s)	313, 388
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	172, 524
Bst6I	CTCTTC	1 cut(s)	185
BstDEI	CTNAG	5 cut(s)	278, 516, 642, 671, 681
BstDSI	CCRYGG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	5 cut(s)	94, 109, 258, 586, 676
BstFNI	CGCG	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	128, 497
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	4 cut(s)	129, 435, 510, 739
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	651
Bsu15I	ATCGAT	1 cut(s)	695
Bsu36I	CCTNAGG	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	47, 412
BsuTUI	ATCGAT	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	5 cut(s)	94, 109, 258, 586, 676
BtsIMutI	CAGTG	1 cut(s)	320
BtuMI	TCGCGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	3 cut(s)	172, 239, 734
ClaI	ATCGAT	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	2 cut(s)	139, 379
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	5 cut(s)	278, 516, 642, 671, 681
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraI	TTTAAA	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	3 cut(s)	172, 239, 734
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	142, 382
FaiI	YATR	5 cut(s)	140, 333, 380, 609, 732
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	138, 378
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	665
FokI	GGATG	5 cut(s)	101, 116, 265, 593, 663
Fsp4HI	GCNGC	1 cut(s)	665
FspBI	CTAG	2 cut(s)	290, 461
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	665
GsuI	CTGGAG	2 cut(s)	134, 519
HaeIII	GGCC	2 cut(s)	47, 412
HapII	CCGG	4 cut(s)	131, 437, 512, 747
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	142, 382
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	227, 646
HpaII	CCGG	4 cut(s)	131, 437, 512, 747
HphI	GGTGA	4 cut(s)	302, 305, 451, 572
Hpy166II	GTNNAC	3 cut(s)	346, 403, 563
Hpy188I	TCNGA	4 cut(s)	16, 467, 645, 672
Hpy188III	TCNNGA	3 cut(s)	175, 536, 650
Hpy8I	GTNNAC	3 cut(s)	346, 403, 563
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	5 cut(s)	11, 58, 230, 368, 567
HpyCH4III	ACNGT	2 cut(s)	172, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	5 cut(s)	278, 516, 642, 671, 681
Hsp92II	CATG	2 cut(s)	142, 382
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	73, 153, 538
Lsp1109I	GCAGC	1 cut(s)	651
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	2 cut(s)	290, 461
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	202, 541, 716
MluCI	AATT	2 cut(s)	204, 653
MmeI	TCCRAC	1 cut(s)	145
MseI	TTAA	2 cut(s)	492, 690
MspI	CCGG	4 cut(s)	131, 437, 512, 747
MspR9I	CCNGG	4 cut(s)	131, 437, 512, 741
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	1 cut(s)	673
NciI	CCSGG	3 cut(s)	131, 437, 512
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	142, 382
NlaIV	GGNNCC	2 cut(s)	69, 745
NmuCI	GTSAC	1 cut(s)	449
NruI	TCGCGA	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	227, 646
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	2 cut(s)	69, 745
PspPI	GGNCC	3 cut(s)	172, 239, 734
RruI	TCGCGA	1 cut(s)	651
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	492, 690
SatI	GCNGC	1 cut(s)	665
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	3 cut(s)	172, 239, 734
ScaI	AGTACT	1 cut(s)	521
ScrFI	CCNGG	4 cut(s)	131, 437, 512, 741
SfaNI	GCATC	1 cut(s)	685
SinI	GGWCC	3 cut(s)	172, 239, 734
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	2 cut(s)	204, 653
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	3 cut(s)	58, 76, 433
SspMI	CTAG	2 cut(s)	290, 461
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	4 cut(s)	129, 435, 510, 739
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	172, 524
TaqI	TCGA	1 cut(s)	695
TasI	AATT	2 cut(s)	204, 653
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	227, 646
Tru1I	TTAA	2 cut(s)	492, 690
Tru9I	TTAA	2 cut(s)	492, 690
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	664
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	105, 269
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	320
VpaK11BI	GGWCC	3 cut(s)	172, 239, 734
XagI	CCTNNNNNAGG	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	290, 461
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.