Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Reverse (-)

15265232 .. 15266939

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCGAACCAAGATGAGGGAACGAAGAAGGACTTCAGCACCGCCATTCTCAACCGCAAGAAGGCTCCAAATCGCCTCATTGTCGATGAAGCTGTGGTGGATGACAACTCCATCATCCAACTCCACCCGGCGACCATGGAGAAGCTCCAGCTCTTTCGTGGTGACACAGTCTTGATCAAAGGAAAGAAGAGAAGAGACACAATCTGTATTGCTCTTGCTGATGATACATGTGAGGAACCAAAGGTAAGGATGAACAAGGTTGTGAGGAACAACCTTAGGGTTAGGCTTGGTGATGTTGTTTCCATTCACCAATGCGCTGATGTTAAGTATGGAAAGCGTGTCCACATTCTCCCTATAGATGACACAATTGAAGGGATCACTGGAAATCTGTTTGATGCCTACTTGAAGCCTTATTTCCAAGAGACCTACCGCCCGGTGAGGAAAGAGTATTATTATAATAATTACGGGAAAGGCGGTCGCCTCAACGCCTTGAGGCACTCGCCTCGCGAGGCTCTAGGCGGTCGCCTTCGCCTTCGCTTTCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

182

Amino Acids

20.97

Weight (kDa)

9.68

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	25 - 106	3.8e-23	Cell division protein 48 (CDC48), N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccII	CGCG	1 cut(s)	507
AciI	CCGC	5 cut(s)	42, 55, 430, 474, 519
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	16, 61
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	371, 406
AluBI	AGCT	3 cut(s)	92, 145, 151
AluI	AGCT	3 cut(s)	92, 145, 151
Alw26I	GTCTC	2 cut(s)	189, 416
AlwI	GGATC	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	317
AsuC2I	CCSGG	2 cut(s)	128, 434
AsuHPI	GGTGA	4 cut(s)	173, 299, 302, 448
AxyI	CCTNAGG	1 cut(s)	275
BccI	CCATC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	128, 434
BcoDI	GTCTC	2 cut(s)	189, 416
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	128, 434
BmiI	GGNNCC	2 cut(s)	66, 237
BmrFI	CCNGG	2 cut(s)	128, 434
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	2 cut(s)	128, 434
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 61
Bse1I	ACTGG	1 cut(s)	385
Bse21I	CCTNAGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	106, 114, 255
BseLI	CCNNNNNNNGG	2 cut(s)	16, 61
BseNI	ACTGG	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	2 cut(s)	478, 523
BsiEI	CGRYCG	2 cut(s)	478, 523
BsiSI	CCGG	2 cut(s)	128, 434
BslI	CCNNNNNNNGG	2 cut(s)	16, 61
BsmAI	GTCTC	2 cut(s)	189, 416
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	174, 375
Bsp19I	CCATGG	1 cut(s)	135
Bsp68I	TCGCGA	1 cut(s)	507
BspACI	CCGC	5 cut(s)	42, 55, 430, 474, 519
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	66, 237
BspPI	GGATC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	174, 375
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	182, 187
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	106, 114, 255
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	2 cut(s)	177, 378
BstMAI	GTCTC	2 cut(s)	189, 416
BstMBI	GATC	2 cut(s)	174, 375
BstMCI	CGRYCG	2 cut(s)	478, 523
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	126, 432
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	106, 114, 255
BtsIMutI	CAGTG	1 cut(s)	378
BtuMI	TCGCGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	317
CviAII	CATG	2 cut(s)	136, 228
CviJI	RGCY	7 cut(s)	65, 92, 145, 151, 286, 409, 512
CviKI_1	RGCY	7 cut(s)	65, 92, 145, 151, 286, 409, 512
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	2 cut(s)	176, 377
DpnII	GATC	2 cut(s)	174, 375
Eam1104I	CTCTTC	2 cut(s)	182, 187
EarI	CTCTTC	2 cut(s)	182, 187
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 231
FaiI	YATR	5 cut(s)	137, 229, 330, 356, 456
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	2 cut(s)	135, 227
FbaI	TGATCA	1 cut(s)	174
FokI	GGATG	3 cut(s)	101, 113, 262
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	131
HapII	CCGG	2 cut(s)	128, 434
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	139, 231
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	128, 434
HphI	GGTGA	4 cut(s)	173, 299, 302, 448
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	172, 506
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	5 cut(s)	22, 55, 365, 536, 542
HpyCH4III	ACNGT	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	139, 231
HspAI	GCGC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	174, 375
LmnI	GCTCC	2 cut(s)	70, 150
LpnPI	CCDG	4 cut(s)	141, 161, 366, 447
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	176, 377
MboI	GATC	2 cut(s)	174, 375
MboII	GAAGA	3 cut(s)	37, 199, 204
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	2 cut(s)	366, 460
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	10, 86, 226, 258, 432, 486, 491, 502, 513
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	128, 434
MspR9I	CCNGG	2 cut(s)	128, 434
MunI	CAATTG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	507
NciI	CCSGG	2 cut(s)	128, 434
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	174, 375
NlaIII	CATG	2 cut(s)	139, 231
NlaIV	GGNNCC	2 cut(s)	66, 237
NmuCI	GTSAC	1 cut(s)	161
NruI	TCGCGA	1 cut(s)	507
NspI	RCATGY	1 cut(s)	231
PciI	ACATGT	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	32
PflFI	GACNNNGTC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	456
PspN4I	GGNNCC	2 cut(s)	66, 237
PsyI	GACNNNGTC	1 cut(s)	167
RruI	TCGCGA	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	174, 375
ScrFI	CCNGG	2 cut(s)	128, 434
SetI	ASST	7 cut(s)	94, 147, 153, 246, 261, 276, 428
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	2 cut(s)	366, 460
SsiI	CCGC	5 cut(s)	42, 55, 430, 474, 519
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	126, 432
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	5, 84
TasI	AATT	2 cut(s)	366, 460
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	102, 266
TspRI	CASTG	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	167
XceI	RCATGY	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.