Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

33733323 .. 33737928

Gene Structure 4606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGACCGATAAGGCTGAATCGTCCGACCCTAAGGGGACCAAGAGGGATTTCAGCACTGCGATTCTCGAGCGGAAGAAGGCCGCGAATCGCCTCGTCGTCGATGAGGCCATCAACGATGACAACTCCGTCGTCGCGCTCCACCCTGAGACCATGGAGAAGCTCCAGCTCTTCAGGGGCGACACAATCCTCATCAAGGGTTTTGATGTAAAGTTTTGTGCTTTTCTGCTGCCTCTGAACCCTTATGGGGGACTCAGTGTATGCTTGATATTGGCATTGTTTGGAAGTACAAGAGCTAATTATGTATCTTTCTTTCAGGGAAAGAAAAGGAAGGATACAATCTGCATTGCCCTTGCTGATGATACTTGTGACGAACCAAAGATTAGGATGAACAAGGTTGTGAGGAGCAATCTAAGGGTTAGGCTTGGGGATGTTGTTTCTGTTCACCAATGTGCTGATGTCAAGTACGGGAAGCGTGTGCACATTCTCCCTGTGGATGACACTATTGAAGGGGTTACTGGAAGTTTGTTTGATGCCTACTTGAAACCGTATTTCCTGGAGGCCTACCGCCCAGTGAGAAAGGGTGATCTCTTCCTCGTGAGAGGAGGAATGAGGAGTGTAGAGTTCAAGGTTATTGAGACTGATCCTTCTGAGTACTGTGTTGTTGCTCCAGACACTGAAATCTTCTGTGAGGGGGAGCCAGTAAGAAGGGAGGATGAGGATAGATTAGATGATGTTGGTTATGATGATGTTGGTGGTGTCAGGAAGCAGATGGCTCAGATTCGTGAATTAGTGGAGCTGCCACTAAGGCATCCTCAGCTCTTTAAATCAATTGGTGTGAAGCCACCAAAGGGTATTCTGTTGTATGGGCCACCTGGATCTGGTAAAACTCTAATTGCCAGAGCTGTCGCGAATGAAACTGGGGCATTCTTTTTCTGCATCAATGGACCTGAAATCATGTCAAAATTGGCTGGGGAGAGTGAAAGCAACCTCAGGAAAGCTTTTGAGGAAGCAGAGAAGAATGCACCATCAATTATCTTTATTGATGAGATTGATTCAATTGCTCCCAAGAGAGAGAAGACACATGGAGAAGTTGAGAGGAGAATTGTGTCCCAGCTCTTGACACTTATGGATGGACTTAAATCCCGTGCGCATGTAATTGTTATGGGGGCTACAAATCGTCCAAACAGTATTGACCCAGCTCTCAGAAGGTTCGGTAGATTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTCCTTCGTATTCATACAAAGAACATGAAGCTGGCTGAAGATGTTGATCTGGAAAAGATTGGCAAGGAGACACATGGTTATGTTGGTGCTGATCTTGCTGCTCTATGTACTGAGGCTGCACTCCAGTGCATCAGAGAGAAGATGGATGTCATTGACTTGGAAGATGAGGAAATAGATGCTGAGATACTCAACTCAATGGCAGTTACAAACGAACACTTCTCGACTGCTCTTGGAACAAGTAACCCATCTGCTCTTCGTGAAACGGTTGTTGAAGTGCCCAATGTTTCCTGGGATGCTATTGGAGGTCTTGAGAATGTTAAGAGAGAACTTCAAGAGACGGTTCAATATCCTGTTGAGCATCCTGAGAAATTTGAGAAATTTGGGATGTCGCCCTCAAAGGGAGTTCTATTCTATGGCCCTCCTGGGTGTGGTAAAACTCTTCTTGCCAAGGCAATTGCCAATGAGTGCCAGGCAAACTTCATCAGTATCAAGGGACCTGAATTGCTTACTATGTGGTTTGGAGAGAGTGAGGCCAATGTGCGTGAAATCTTTGACAAGGCTCGTGGATCTGCTCCATGTGTCCTATTCTTTGACGAACTTGATTCCATTGCTACTCAGAGAGGTAGCAGTTCAGGTGATGCTGGAGGTGCTGCAGATAGGGTTTTAAACCAACTCCTTACAGAGATGGACGGAATGTCTGCAAAGAAGACTGTTTTCATTATTGGCGCCACCAACAGACCTGACATTATAGACCCTGCACTTCTACGTCCAGGCCGTCTGGATCAATTGATATACATCCCTCTTCCTGATGAGGAATCCCGCCTTCAAATATTCAAGGCAGCCTTGAGGAAGTCTCCAGTTTCTAAAGAAGTGGACCTTGCTGCGCTTGCCAAGTACACCCAAGGTTTCAGCGGTGCTGATATCACAGAAATTTGCCAGCGTGCTGTCAAATATGCCATCAGAGAGAATATTGAGAAGGATATTGAGAGGGAGAGGAGGAGAAATGAGAATCCTGAGGCTATGGAGGAAGATGTGGAGGATGAAGTTCCTGAAATCAGGGCAGCTCACTTTGAGGAATCGATGAAGTTTGCTCGTCGCAGTGTTAGTGATGCTGATATCCGCAAATACCAGGCATTTGCTCAGACATTGCAGCAGTCAAGAGGATTTGGAACAGAGTTTAGGTTTCCAGAAAGTGGCTCTGCTGCAGCCGCCACTGGATCTGACCCTTTTGCAACTAGTGGTGCTGGGGCAGATGAAGATGACCTTTACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

847

Amino Acids

93.81

Weight (kDa)

5.1

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	30 - 80	4.4e-08	Cell division protein 48 (CDC48), N-terminal domain
CDC48_N	PF02359	105 - 151	3.5e-10	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	172 - 235	2.1e-11	Cell division protein 48 (CDC48), domain 2
AAA	PF00004	285 - 414	1.5e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	437 - 480	2.6e-16	AAA+ lid domain
AAA	PF00004	558 - 691	4.9e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	713 - 752	5.1e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	1149
AccB1I	GGYRCC	1 cut(s)	1994
AccB7I	CCANNNNNTGG	1 cut(s)	2462
AccBSI	CCGCTC	1 cut(s)	70
AccII	CGCG	3 cut(s)	83, 134, 908
AciI	CCGC	7 cut(s)	70, 81, 565, 2089, 2181, 2389, 2478
AclWI	GGATC	5 cut(s)	635, 883, 1843, 2058, 2494
AcsI	RAATTY	3 cut(s)	1637, 1646, 2199
AcuI	CTGAAG	2 cut(s)	154, 1326
AcyI	GRCGYC	2 cut(s)	1261, 1995
AfaI	GTAC	5 cut(s)	286, 464, 653, 1378, 2165
AfiI	CCNNNNNNNGG	8 cut(s)	193, 244, 245, 848, 878, 1667, 1697, 2462
AgsI	TTSAA	9 cut(s)	506, 541, 625, 1056, 1541, 1601, 1613, 2096, 2104
AhdI	GACNNNNNGTC	1 cut(s)	1963
AhlI	ACTAGT	1 cut(s)	2504
AjnI	CCWGG	7 cut(s)	552, 871, 1556, 1690, 1737, 2038, 2397
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	2 cut(s)	447, 1393
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	5 cut(s)	140, 629, 1331, 1598, 2127
Alw44I	GTGCAC	1 cut(s)	476
AlwI	GGATC	5 cut(s)	635, 883, 1843, 2058, 2494
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	7 cut(s)	78, 105, 558, 866, 1684, 1800, 2041
ApaLI	GTGCAC	1 cut(s)	476
ApoI	RAATTY	3 cut(s)	1637, 1646, 2199
AspLEI	GCGC	4 cut(s)	136, 1150, 1997, 2155
AspS9I	GGNCC	7 cut(s)	36, 866, 944, 1270, 1685, 1763, 2143
AsuHPI	GGTGA	3 cut(s)	434, 593, 1916
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	5 cut(s)	36, 944, 1270, 1763, 2143
AxyI	CCTNAGG	3 cut(s)	30, 989, 2283
BaeGI	GKGCMC	2 cut(s)	480, 1548
BanI	GGYRCC	1 cut(s)	1994
BauI	CACGAG	2 cut(s)	593, 1830
BbsI	GAAGAC	2 cut(s)	1082, 1982
Bbv12I	GWGCWC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	813
BccI	CCATC	8 cut(s)	116, 763, 1033, 1124, 1405, 1522, 1948, 2234
BceAI	ACGGC	1 cut(s)	2028
BciT130I	CCWGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	5 cut(s)	140, 629, 1331, 1598, 2127
BcuI	ACTAGT	1 cut(s)	2504
BfaI	CTAG	1 cut(s)	2505
BfmI	CTRYAG	2 cut(s)	1920, 2472
BfoI	RGCGCY	1 cut(s)	1998
BfuI	GTATCC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	805
BmcAI	AGTACT	1 cut(s)	653
Bme1390I	CCNGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
Bme18I	GGWCC	5 cut(s)	36, 944, 1270, 1763, 2143
BmeRI	GACNNNNNGTC	1 cut(s)	1963
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	7 cut(s)	36, 866, 944, 1270, 1685, 1763, 2143
BmiI	GGNNCC	4 cut(s)	37, 696, 1764, 1996
BmrFI	CCNGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
BmrI	ACTGGG	2 cut(s)	563, 927
BmsI	GCATC	9 cut(s)	520, 817, 945, 1407, 1435, 1552, 1636, 1897, 2368
BmuI	ACTGGG	2 cut(s)	563, 927
BpiI	GAAGAC	2 cut(s)	1082, 1982
BplI	GAGNNNNNCTC	2 cut(s)	2107, 2139
BpmI	CTGGAG	6 cut(s)	146, 575, 651, 1376, 1932, 2109
Bpu10I	CCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	3 cut(s)	1286, 1598, 2134
Bsa29I	ATCGAT	1 cut(s)	2348
BsaBI	GATNNNNATC	2 cut(s)	1314, 2063
BsaHI	GRCGYC	2 cut(s)	1261, 1995
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	5 cut(s)	150, 1557, 1691, 1716, 2170
Bsc4I	CCNNNNNNNGG	8 cut(s)	193, 244, 245, 848, 878, 1667, 1697, 2462
Bse1I	ACTGG	7 cut(s)	520, 569, 698, 922, 1393, 2126, 2488
Bse21I	CCTNAGG	3 cut(s)	30, 989, 2283
Bse3DI	GCAATG	3 cut(s)	342, 1875, 2414
Bse8I	GATNNNNATC	2 cut(s)	1314, 2063
BseBI	CCWGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
BseCI	ATCGAT	1 cut(s)	2348
BseDI	CCNNGG	5 cut(s)	150, 1557, 1691, 1716, 2170
BseJI	GATNNNNATC	2 cut(s)	1314, 2063
BseLI	CCNNNNNNNGG	8 cut(s)	193, 244, 245, 848, 878, 1667, 1697, 2462
BseMI	GCAATG	3 cut(s)	342, 1875, 2414
BseNI	ACTGG	7 cut(s)	520, 569, 698, 922, 1393, 2126, 2488
BseRI	GAGGAG	6 cut(s)	415, 615, 625, 1111, 2278, 2281
BseSI	GKGCMC	2 cut(s)	480, 1548
BseYI	CCCAGC	4 cut(s)	968, 1110, 1195, 2513
BsgI	GTGCAG	2 cut(s)	1371, 2010
Bsh1236I	CGCG	3 cut(s)	83, 134, 908
BshFI	GGCC	7 cut(s)	80, 107, 560, 868, 1686, 1802, 2043
BshNI	GGYRCC	1 cut(s)	1994
BshVI	ATCGAT	1 cut(s)	2348
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	65
BslFI	GGGAC	4 cut(s)	49, 261, 1093, 1776
BslI	CCNNNNNNNGG	8 cut(s)	193, 244, 245, 848, 878, 1667, 1697, 2462
BsmAI	GTCTC	5 cut(s)	140, 629, 1331, 1598, 2127
BsmBI	CGTCTC	1 cut(s)	1598
BsmFI	GGGAC	4 cut(s)	49, 261, 1093, 1776
BsmI	GAATGC	2 cut(s)	923, 1024
BsnI	GGCC	7 cut(s)	80, 107, 560, 868, 1686, 1802, 2043
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	480, 1548
Bsp143I	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
Bsp19I	CCATGG	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	908
BspACI	CCGC	7 cut(s)	70, 81, 565, 2089, 2181, 2389, 2478
BspANI	GGCC	7 cut(s)	80, 107, 560, 868, 1686, 1802, 2043
BspDI	ATCGAT	1 cut(s)	2348
BspFNI	CGCG	3 cut(s)	83, 134, 908
BspLI	GGNNCC	4 cut(s)	37, 696, 1764, 1996
BspMAI	CTGCAG	2 cut(s)	1924, 2476
BspPI	GGATC	5 cut(s)	635, 883, 1843, 2058, 2494
BspQI	GCTCTTC	2 cut(s)	173, 1527
BspT107I	GGYRCC	1 cut(s)	1994
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	3 cut(s)	342, 1875, 2414
BsrI	ACTGG	7 cut(s)	520, 569, 698, 922, 1393, 2126, 2488
BssECI	CCNNGG	5 cut(s)	150, 1557, 1691, 1716, 2170
BssMI	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
BssNI	GRCGYC	2 cut(s)	1261, 1995
BssSI	CACGAG	2 cut(s)	593, 1830
BssT1I	CCWWGG	3 cut(s)	150, 1716, 2170
Bst2BI	CACGAG	2 cut(s)	593, 1830
Bst2UI	CCWGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
Bst4CI	ACNGT	6 cut(s)	546, 656, 1187, 1534, 1609, 1981
Bst6I	CTCTTC	5 cut(s)	173, 593, 1527, 1713, 2076
BstACI	GRCGYC	2 cut(s)	1261, 1995
BstC8I	GCNNGC	4 cut(s)	1302, 2157, 2207, 2211
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstFNI	CGCG	3 cut(s)	83, 134, 908
BstH2I	RGCGCY	1 cut(s)	1998
BstHHI	GCGC	4 cut(s)	136, 1150, 1997, 2155
BstKTI	GATC	9 cut(s)	586, 643, 878, 1225, 1318, 1363, 1838, 2053, 2489
BstMAI	GTCTC	5 cut(s)	140, 629, 1331, 1598, 2127
BstMBI	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
BstMWI	GCNNNNNNNGC	6 cut(s)	805, 814, 1364, 1916, 2156, 2477
BstNI	CCWGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
BstNSI	RCATGY	1 cut(s)	1154
BstSCI	CCNGG	7 cut(s)	552, 871, 1556, 1690, 1737, 2038, 2397
BstSFI	CTRYAG	2 cut(s)	1920, 2472
BstSLI	GKGCMC	2 cut(s)	480, 1548
BstUI	CGCG	3 cut(s)	83, 134, 908
BstV2I	GAAGAC	2 cut(s)	1082, 1982
BstX2I	RGATCY	3 cut(s)	875, 1835, 2486
BstYI	RGATCY	3 cut(s)	875, 1835, 2486
Bsu15I	ATCGAT	1 cut(s)	2348
Bsu36I	CCTNAGG	3 cut(s)	30, 989, 2283
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	7 cut(s)	80, 107, 560, 868, 1686, 1802, 2043
BsuTUI	ATCGAT	1 cut(s)	2348
BtgI	CCRYGG	1 cut(s)	150
BtsI	GCAGTG	2 cut(s)	54, 2374
BtsIMutI	CAGTG	7 cut(s)	54, 259, 576, 672, 1400, 2374, 2481
BtuMI	TCGCGA	1 cut(s)	908
Cac8I	GCNNGC	4 cut(s)	1302, 2157, 2207, 2211
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	4 cut(s)	136, 1150, 1997, 2155
Cfr13I	GGNCC	7 cut(s)	36, 866, 944, 1270, 1685, 1763, 2143
ClaI	ATCGAT	1 cut(s)	2348
CseI	GACGC	1 cut(s)	1250
Csp6I	GTAC	5 cut(s)	285, 463, 652, 1377, 2164
CspCI	CAANNNNNGTGG	2 cut(s)	1813, 1848
CviAII	CATG	7 cut(s)	151, 955, 1082, 1151, 1294, 1343, 1845
CviQI	GTAC	5 cut(s)	285, 463, 652, 1377, 2164
DinI	GGCGCC	1 cut(s)	1996
DpnI	GATC	9 cut(s)	585, 642, 877, 1224, 1317, 1362, 1837, 2052, 2488
DpnII	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
DraI	TTTAAA	2 cut(s)	823, 1935
DrdI	GACNNNNNNGTC	1 cut(s)	125
DriI	GACNNNNNGTC	1 cut(s)	1963
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	5 cut(s)	173, 593, 1527, 1713, 2076
Eam1105I	GACNNNNNGTC	1 cut(s)	1963
EarI	CTCTTC	5 cut(s)	173, 593, 1527, 1713, 2076
Eco130I	CCWWGG	3 cut(s)	150, 1716, 2170
Eco147I	AGGCCT	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	2 cut(s)	2191, 2386
Eco47I	GGWCC	5 cut(s)	36, 944, 1270, 1763, 2143
Eco57I	CTGAAG	2 cut(s)	154, 1326
Eco81I	CCTNAGG	3 cut(s)	30, 989, 2283
Eco88I	CYCGRG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	1270, 1763
EcoRII	CCWGG	7 cut(s)	552, 871, 1556, 1690, 1737, 2038, 2397
EcoRV	GATATC	2 cut(s)	2191, 2386
EcoT14I	CCWWGG	3 cut(s)	150, 1716, 2170
EgeI	GGCGCC	1 cut(s)	1996
EheI	GGCGCC	1 cut(s)	1996
ErhI	CCWWGG	3 cut(s)	150, 1716, 2170
Esp3I	CGTCTC	1 cut(s)	1598
FaeI	CATG	7 cut(s)	154, 958, 1085, 1154, 1297, 1346, 1848
FalI	AAGNNNNNCTT	5 cut(s)	2096, 2128, 2130, 2162, 2517
FaqI	GGGAC	4 cut(s)	49, 261, 1093, 1776
FatI	CATG	7 cut(s)	150, 954, 1081, 1150, 1293, 1342, 1844
FauI	CCCGC	1 cut(s)	2096
FspAI	RTGCGCAY	1 cut(s)	1149
FspBI	CTAG	1 cut(s)	2505
FspI	TGCGCA	1 cut(s)	1149
GlaI	GCGC	4 cut(s)	135, 1149, 1996, 2154
GsaI	CCCAGC	4 cut(s)	972, 1114, 1199, 2517
GsuI	CTGGAG	6 cut(s)	146, 575, 651, 1376, 1932, 2109
HaeII	RGCGCY	1 cut(s)	1998
HaeIII	GGCC	7 cut(s)	80, 107, 560, 868, 1686, 1802, 2043
HgaI	GACGC	1 cut(s)	1250
HhaI	GCGC	4 cut(s)	136, 1150, 1997, 2155
Hin1I	GRCGYC	2 cut(s)	1261, 1995
Hin1II	CATG	7 cut(s)	154, 958, 1085, 1154, 1297, 1346, 1848
Hin6I	GCGC	4 cut(s)	134, 1148, 1995, 2153
HinP1I	GCGC	4 cut(s)	134, 1148, 1995, 2153
HindIII	AAGCTT	1 cut(s)	996
HphI	GGTGA	3 cut(s)	434, 593, 1916
Hpy166II	GTNNAC	4 cut(s)	442, 478, 2143, 2166
Hpy8I	GTNNAC	4 cut(s)	442, 478, 2143, 2166
Hpy99I	CGWCG	5 cut(s)	98, 101, 131, 134, 2367
HpyAV	CCTTC	9 cut(s)	70, 322, 500, 654, 699, 1200, 1283, 2102, 2239
HpyCH4III	ACNGT	6 cut(s)	546, 656, 1187, 1534, 1609, 1981
HpyCH4IV	ACGT	1 cut(s)	2035
HpyF10VI	GCNNNNNNNGC	6 cut(s)	805, 814, 1364, 1916, 2156, 2477
HpySE526I	ACGT	1 cut(s)	2035
Hsp92I	GRCGYC	2 cut(s)	1261, 1995
Hsp92II	CATG	7 cut(s)	154, 958, 1085, 1154, 1297, 1346, 1848
HspAI	GCGC	4 cut(s)	134, 1148, 1995, 2153
KasI	GGCGCC	1 cut(s)	1994
Kzo9I	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
LguI	GCTCTTC	2 cut(s)	173, 1527
LmnI	GCTCC	8 cut(s)	141, 165, 402, 670, 694, 793, 1066, 1846
LweI	GCATC	9 cut(s)	520, 817, 945, 1407, 1435, 1552, 1636, 1897, 2368
MaeI	CTAG	1 cut(s)	2505
MaeII	ACGT	1 cut(s)	2035
MaeIII	GTNAC	4 cut(s)	365, 511, 1471, 1508
MalI	GATC	9 cut(s)	585, 642, 877, 1224, 1317, 1362, 1837, 2052, 2488
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
MfeI	CAATTG	4 cut(s)	828, 1056, 1722, 2054
MflI	RGATCY	3 cut(s)	875, 1835, 2486
MhlI	GDGCHC	2 cut(s)	480, 1548
Mly113I	GGCGCC	1 cut(s)	1995
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	48
MseI	TTAA	4 cut(s)	822, 1137, 1587, 1934
MslI	CAYNNNNRTG	3 cut(s)	447, 1347, 1393
MspA1I	CMGCKG	1 cut(s)	2181
MspR9I	CCNGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
MunI	CAATTG	4 cut(s)	828, 1056, 1722, 2054
Mva1269I	GAATGC	2 cut(s)	923, 1024
MvaI	CCWGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
MvnI	CGCG	3 cut(s)	83, 134, 908
MwoI	GCNNNNNNNGC	6 cut(s)	805, 814, 1364, 1916, 2156, 2477
NarI	GGCGCC	1 cut(s)	1995
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
NlaIII	CATG	7 cut(s)	154, 958, 1085, 1154, 1297, 1346, 1848
NlaIV	GGNNCC	4 cut(s)	37, 696, 1764, 1996
NmuCI	GTSAC	1 cut(s)	365
NruI	TCGCGA	1 cut(s)	908
NsbI	TGCGCA	1 cut(s)	1149
NspI	RCATGY	1 cut(s)	1154
OliI	CACNNNNGTG	2 cut(s)	447, 1393
PaeR7I	CTCGAG	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	2 cut(s)	173, 1527
PcsI	WCGNNNNNNNCGW	1 cut(s)	2041
PctI	GAATGC	2 cut(s)	923, 1024
PfeI	GAWTC	9 cut(s)	17, 61, 85, 778, 1052, 1871, 2084, 2278, 2345
PflMI	CCANNNNNTGG	1 cut(s)	2462
PfoI	TCCNGGA	1 cut(s)	552
PleI	GAGTC	1 cut(s)	243
PluTI	GGCGCC	1 cut(s)	1998
PpsI	GAGTC	1 cut(s)	243
PpuMI	RGGWCCY	2 cut(s)	1270, 1763
Psp5II	RGGWCCY	2 cut(s)	1270, 1763
Psp6I	CCWGG	7 cut(s)	552, 871, 1556, 1690, 1737, 2038, 2397
PspFI	CCCAGC	4 cut(s)	968, 1110, 1195, 2513
PspGI	CCWGG	7 cut(s)	552, 871, 1556, 1690, 1737, 2038, 2397
PspN4I	GGNNCC	4 cut(s)	37, 696, 1764, 1996
PspPI	GGNCC	7 cut(s)	36, 866, 944, 1270, 1685, 1763, 2143
PspPPI	RGGWCCY	2 cut(s)	1270, 1763
PstI	CTGCAG	2 cut(s)	1924, 2476
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	3 cut(s)	875, 1835, 2486
RruI	TCGCGA	1 cut(s)	908
RsaI	GTAC	5 cut(s)	286, 464, 653, 1378, 2165
RsaNI	GTAC	5 cut(s)	285, 463, 652, 1377, 2164
RseI	CAYNNNNRTG	3 cut(s)	447, 1347, 1393
SapI	GCTCTTC	2 cut(s)	173, 1527
SaqAI	TTAA	4 cut(s)	822, 1137, 1587, 1934
Sau3AI	GATC	9 cut(s)	583, 640, 875, 1222, 1315, 1360, 1835, 2050, 2486
Sau96I	GGNCC	7 cut(s)	36, 866, 944, 1270, 1685, 1763, 2143
ScaI	AGTACT	1 cut(s)	653
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	7 cut(s)	554, 873, 1558, 1692, 1739, 2040, 2399
SduI	GDGCHC	2 cut(s)	480, 1548
SfaNI	GCATC	9 cut(s)	520, 817, 945, 1407, 1435, 1552, 1636, 1897, 2368
SfcI	CTRYAG	2 cut(s)	1920, 2472
SfoI	GGCGCC	1 cut(s)	1996
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	5 cut(s)	36, 944, 1270, 1763, 2143
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	447, 1347, 1393
SmlI	CTYRAG	4 cut(s)	65, 1265, 1577, 2113
SmoI	CTYRAG	4 cut(s)	65, 1265, 1577, 2113
SpeI	ACTAGT	1 cut(s)	2504
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	7 cut(s)	70, 81, 565, 2089, 2181, 2389, 2478
SspDI	GGCGCC	1 cut(s)	1994
SspI	AATATT	2 cut(s)	2100, 2239
SspMI	CTAG	1 cut(s)	2505
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	7 cut(s)	552, 871, 1556, 1690, 1737, 2038, 2397
StyI	CCWWGG	3 cut(s)	150, 1716, 2170
TaaI	ACNGT	6 cut(s)	546, 656, 1187, 1534, 1609, 1981
TaiI	ACGT	1 cut(s)	2038
TaqI	TCGA	4 cut(s)	66, 99, 1490, 2348
TaqII	GACCGA	1 cut(s)	20
TatI	WGTACW	4 cut(s)	284, 651, 1376, 2163
TauI	GCSGC	2 cut(s)	83, 2480
TfiI	GAWTC	9 cut(s)	17, 61, 85, 778, 1052, 1871, 2084, 2278, 2345
Tru1I	TTAA	4 cut(s)	822, 1137, 1587, 1934
Tru9I	TTAA	4 cut(s)	822, 1137, 1587, 1934
TscAI	CASTG	7 cut(s)	61, 259, 576, 679, 1400, 2374, 2488
TseFI	GTSAC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	365
TspGWI	ACGGA	2 cut(s)	115, 1974
TspRI	CASTG	7 cut(s)	61, 259, 576, 679, 1400, 2374, 2488
Van91I	CCANNNNNTGG	1 cut(s)	2462
VneI	GTGCAC	1 cut(s)	476
VpaK11BI	GGWCC	5 cut(s)	36, 944, 1270, 1763, 2143
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	3 cut(s)	1637, 1646, 2199
XceI	RCATGY	1 cut(s)	1154
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	1 cut(s)	2505
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.