Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

11134764 .. 11136575

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACCGACAAGGCTGAATCTTCAGACTCTAAGGGAACGAAGAGGGACTTCAGCACCGCAATCCTCGAGCGCAAGAAGGCGGCGAATCGCCTCGTTGTGGACGACGCTATCAACGATGACAACTCCGTCGTCGCGCTCCACCCCGATACGATGGAGAAGCTCCAGCTCTTTCGTGGCGATACCATCTTGATTAAGGGAAAGAAAAGGAAGGATACCATCTGCATTGCTCTTGCTGATGATACGTGTGAAGAACCTAAGATCAGGATGAACAAGGTTGTGAGGAGCAATCTAAGGGTCAGGCTTGGGGATGTTGTTTCTGTTCACCAATGTGCTGATGTCAAGTACGGAAAGCGTGTCCACATCCTACCTGTGGATGATACTATTGAAGGGGTCACTGGAAATCTGTTTGATGCTTACTTGAAACCTTATTTCCTGGAGGCCTACCGTCCAGTGAGGAAGGGTGATCGATCCAATAAGCAACATCTTCCTTGTGAGAGGAGGAATGAGGAGTGTGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

174

Amino Acids

19.57

Weight (kDa)

8.77

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	57, 80
AclWI	GGATC	1 cut(s)	462
AcuI	CTGAAG	2 cut(s)	6, 34
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	97, 370
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	386, 421
AjnI	CCWGG	1 cut(s)	432
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	160, 166
AluI	AGCT	2 cut(s)	160, 166
AlwI	GGATC	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	72, 136
AsuHPI	GGTGA	2 cut(s)	314, 473
AvaI	CYCGRG	1 cut(s)	65
BccI	CCATC	3 cut(s)	145, 191, 224
BciT130I	CCWGG	1 cut(s)	434
BciVI	GTATCC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	2 cut(s)	146, 455
Bsa29I	ATCGAT	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 370
Bse1I	ACTGG	2 cut(s)	400, 449
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	434
BseCI	ATCGAT	1 cut(s)	466
BseGI	GGATG	4 cut(s)	270, 313, 360, 379
BseLI	CCNNNNNNNGG	2 cut(s)	97, 370
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	400, 449
BseRI	GAGGAG	3 cut(s)	295, 511, 521
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	97, 370
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	258, 463, 467
BspACI	CCGC	2 cut(s)	57, 80
BspANI	GGCC	1 cut(s)	440
BspDI	ATCGAT	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	400, 449
BssMI	GATC	3 cut(s)	258, 463, 467
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	30, 255, 290
BstF5I	GGATG	4 cut(s)	270, 313, 360, 379
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	72, 136
BstKTI	GATC	3 cut(s)	261, 466, 470
BstMBI	GATC	3 cut(s)	258, 463, 467
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	440
BsuTUI	ATCGAT	1 cut(s)	466
BtsCI	GGATG	4 cut(s)	270, 313, 360, 379
BtsIMutI	CAGTG	2 cut(s)	393, 456
CfoI	GCGC	2 cut(s)	72, 136
ClaI	ATCGAT	1 cut(s)	466
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	343
CviJI	RGCY	5 cut(s)	14, 160, 166, 301, 440
CviKI_1	RGCY	5 cut(s)	14, 160, 166, 301, 440
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	30, 255, 290
DpnI	GATC	3 cut(s)	260, 465, 469
DpnII	GATC	3 cut(s)	258, 463, 467
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	6, 34
Eco88I	CYCGRG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	432
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	4 cut(s)	277, 320, 347, 386
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	2 cut(s)	71, 135
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	2 cut(s)	146, 455
HaeIII	GGCC	1 cut(s)	440
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	72, 136
Hin6I	GCGC	2 cut(s)	70, 134
HinP1I	GCGC	2 cut(s)	70, 134
HinfI	GANTC	3 cut(s)	17, 26, 85
HphI	GGTGA	2 cut(s)	314, 473
Hpy166II	GTNNAC	3 cut(s)	100, 322, 358
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	187, 262
Hpy8I	GTNNAC	3 cut(s)	100, 322, 358
Hpy99I	CGWCG	3 cut(s)	107, 131, 134
HpyAV	CCTTC	4 cut(s)	70, 202, 380, 451
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	222
HpyF3I	CTNAG	3 cut(s)	30, 255, 290
HpySE526I	ACGT	1 cut(s)	242
HspAI	GCGC	2 cut(s)	70, 134
Kzo9I	GATC	3 cut(s)	258, 463, 467
LmnI	GCTCC	3 cut(s)	141, 165, 282
LpnPI	CCDG	8 cut(s)	176, 247, 283, 381, 381, 419, 446, 462
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	260, 465, 469
MboI	GATC	3 cut(s)	258, 463, 467
MboII	GAAGA	4 cut(s)	12, 52, 260, 476
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	36, 74, 101, 273, 430, 447, 489, 492, 499
MseI	TTAA	2 cut(s)	192, 520
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MvnI	CGCG	1 cut(s)	134
NdeII	GATC	3 cut(s)	258, 463, 467
NmuCI	GTSAC	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 111
PfeI	GAWTC	2 cut(s)	17, 85
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspXI	VCTCGAGB	1 cut(s)	65
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	192, 520
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	258, 463, 467
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	7 cut(s)	162, 168, 245, 256, 276, 370, 427
SfaNI	GCATC	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	2 cut(s)	57, 80
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	66, 466
TaqII	GACCGA	1 cut(s)	20
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	17, 85
Tru1I	TTAA	2 cut(s)	192, 520
Tru9I	TTAA	2 cut(s)	192, 520
TscAI	CASTG	2 cut(s)	400, 456
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	2 cut(s)	115, 360
TspRI	CASTG	2 cut(s)	400, 456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.