Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001165

Physical Location & Seq

Genomic Coordinates Forward (+)

27637659 .. 27639981

Gene Structure 2323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1228800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCTCGCGGATAAACCAGAATATTCTGACAGTATGGGAAAGACGAGGGACTTCAGTACGGCGTTACTTGAGCGCAAGAAGGCTGCCAACCGGCTTCTTGTGGATGACACTGTCCACGACAACAACTCAGTCGTAGCGCTGCACCGGGACACTATGGAAAAGCTCCAGCTCTTTTCCGGCGACACGGTCTTGATCAAGGGAAAGAAAAGGAGGGACACAATCTGCGTTGTTGTTGCTGATGATACATGTGACGAACCAAAGCTAAGGGTCAACAAGGTTGTCAGGAGCAACCTGAGGGTTATGCTTGGGGACGTTGTTTCGGTTCATCAATGCGCTGCTATAAAGTATGGAAAGCGCGTCCACATTCTTCCTGTGGACGACAGTATTGAAGGGGTCACTGGAAATCTGTTTGATGCATATTTGAAACCTTATTTCTTCGAGGCCTTCCGCCCGGTGAGGAAGGGTGATCTCTTCTTTGTGAGAGGAGGAATGAGGACTGTAGAGTTCAAGGTTGTTGAAACGGACCCTCTTGAGTGTTCGTGGCAGGAATTTCCGTCGGGGATGTTCCCTGGCCGACGAGCACACAGCTCCCCGAGAGAGTTTGTGCTTGTATTTTACTGTGTGGTTGCTCCCGACACTGAAATCTTCTGTGAAGGGGAACCTGTGAGAAGGGAAGATGAGGAAAGAACTTTAAATGAGGTTGGCTATGACGACGTCGGTGGAGTGAGGAAACAGATGGTAGATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

250

Amino Acids

28.26

Weight (kDa)

5.82

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	32 - 112	3.3e-19	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	132 - 223	4.4e-08	Cell division protein 48 (CDC48), domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53230
fragaria_vesca	FvH4_2g06940 FvH4_2g06950 FvH4_2g07260 FvH4_4g17680 FvH4_6g16220 FvH4_6g16220
malus_domestica	MD03G1125700.v1.1 MD04G1094400.v1.1 MD11G1142500.v1.1 MD12G1114300.v1.1 MD17G1225300.v1.1 MD17G1225400.v1.1 MD17G1225600.v1.1 MD17G1228800.v1.1
prunus_persica	Prupe.4G237600_v2.0.a1 Prupe.6G107800_v2.0.a1 Prupe.6G233700_v2.0.a1 Prupe.6G233700_v2.0.a1
pyrus_communis	pycom04g08940 pycom04g08950 pycom09g14580 pycom11g11820 pycom12g11360
rosa_chinensis	RchiOBHm_Chr3g0470061 RchiOBHm_Chr4g0421621 RchiOBHm_Chr6g0259281 RchiOBHm_Chr6g0259871
rosa_laevigata	RLG00000007663 RLG00000014503 RLG00000014543 RLG00000024300
rosa_multiflora	Rmu_co8522155.1_g000003 Rmu_sc0005600.1_g000001 Rmu_sc0009049.1_g000005 Rmu_sc0011974.1_g000005 Rmu_sc0033604.1_g000001 Rmu_sc0033605.1_g000001 Rmu_ssc0000050.1_g000089
rosa_roxburghii	Rroxscaffold_5G00363870 Rroxscaffold_6G00411220
rosa_rugosa	Rorug03G0106600 Rorug04G0173900 Rorug05G0586800 Rorug05G0590900
rosa_samantha	Rh3AG155800 Rh4CG248200 Rh6AG103300 Rh6AG103400 Rh6AG107600 Rh6BG095700 Rh6CG092600 Rh6CG096400
rosa_wichuraiana	Rw3G014670 Rw4G020040 Rw6G008920 Rw6G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	717
AccII	CGCG	2 cut(s)	8, 357
AciI	CCGC	2 cut(s)	8, 448
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	1 cut(s)	58
AfeI	AGCGCT	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	389, 424, 508, 518
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	4 cut(s)	163, 169, 262, 588
AluI	AGCT	4 cut(s)	163, 169, 262, 588
Alw21I	GWGCWC	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	592
Aor51HI	AGCGCT	1 cut(s)	138
AoxI	GGCC	2 cut(s)	441, 571
ApeKI	GCWGC	3 cut(s)	83, 139, 335
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	4 cut(s)	75, 139, 335, 357
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	2 cut(s)	146, 452
AsuHPI	GGTGA	2 cut(s)	466, 476
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	523
AxyI	CCTNAGG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	70, 126, 322
BccI	CCATC	1 cut(s)	730
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	2 cut(s)	146, 452
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	3 cut(s)	84, 140, 336
BlsI	GCNGC	3 cut(s)	85, 141, 337
Bme1390I	CCNGG	3 cut(s)	146, 452, 570
Bme18I	GGWCC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	525, 660
BmrFI	CCNGG	3 cut(s)	146, 452, 570
BmsI	GCATC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	89, 551
BpuMI	CCSGG	2 cut(s)	146, 452
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	568
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	109, 567
BseMII	CTCAG	2 cut(s)	141, 284
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	3 cut(s)	70, 126, 322
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	8, 357
BshFI	GGCC	2 cut(s)	443, 573
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	4 cut(s)	91, 145, 177, 452
BslFI	GGGAC	4 cut(s)	62, 161, 227, 323
BsmFI	GGGAC	4 cut(s)	62, 161, 227, 323
BsnI	GGCC	2 cut(s)	443, 573
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	192, 466
BspACI	CCGC	2 cut(s)	8, 448
BspANI	GGCC	2 cut(s)	443, 573
BspCNI	CTCAG	2 cut(s)	140, 285
BspFNI	CGCG	2 cut(s)	8, 357
BspLI	GGNNCC	2 cut(s)	525, 660
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	192, 466
BssNI	GRCGYC	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	6 cut(s)	32, 112, 187, 383, 499, 620
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	127, 263, 293
BstF5I	GGATG	2 cut(s)	109, 567
BstFNI	CGCG	2 cut(s)	8, 357
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	4 cut(s)	75, 139, 335, 357
BstKTI	GATC	2 cut(s)	195, 469
BstMBI	GATC	2 cut(s)	192, 466
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	3 cut(s)	144, 450, 568
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	2 cut(s)	8, 357
BstV1I	GCAGC	3 cut(s)	70, 126, 322
Bsu36I	CCTNAGG	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	443, 573
BtsCI	GGATG	2 cut(s)	109, 567
BtsIMutI	CAGTG	3 cut(s)	108, 396, 636
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	4 cut(s)	75, 139, 335, 357
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	523
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	9 cut(s)	83, 94, 163, 169, 262, 443, 573, 588, 705
CviKI_1	RGCY	9 cut(s)	83, 94, 163, 169, 262, 443, 573, 588, 705
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	3 cut(s)	127, 263, 293
DpnI	GATC	2 cut(s)	194, 468
DpnII	GATC	2 cut(s)	192, 466
DraI	TTTAAA	1 cut(s)	693
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	1 cut(s)	437
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	523
Eco47III	AGCGCT	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	1 cut(s)	249
FaiI	YATR	8 cut(s)	35, 155, 247, 302, 341, 348, 418, 708
FaqI	GGGAC	4 cut(s)	62, 161, 227, 323
FatI	CATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	84, 140, 336
FokI	GGATG	2 cut(s)	116, 574
Fsp4HI	GCNGC	3 cut(s)	84, 140, 336
GlaI	GCGC	4 cut(s)	74, 138, 334, 356
GluI	GCNGC	3 cut(s)	84, 140, 336
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	443, 573
HapII	CCGG	4 cut(s)	91, 145, 177, 452
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	4 cut(s)	75, 139, 335, 357
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	1 cut(s)	249
Hin6I	GCGC	4 cut(s)	73, 137, 333, 355
HinP1I	GCGC	4 cut(s)	73, 137, 333, 355
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	743
HpaII	CCGG	4 cut(s)	91, 145, 177, 452
HphI	GGTGA	2 cut(s)	466, 476
Hpy166II	GTNNAC	4 cut(s)	115, 271, 361, 376
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	5 cut(s)	190, 283, 530, 632, 747
Hpy8I	GTNNAC	4 cut(s)	115, 271, 361, 376
Hpy99I	CGWCG	4 cut(s)	559, 579, 716, 719
HpyAV	CCTTC	6 cut(s)	73, 383, 454, 454, 647, 663
HpyCH4III	ACNGT	6 cut(s)	32, 112, 187, 383, 499, 620
HpyCH4IV	ACGT	2 cut(s)	312, 714
HpyCH4V	TGCA	2 cut(s)	142, 416
HpyF3I	CTNAG	3 cut(s)	127, 263, 293
HpySE526I	ACGT	2 cut(s)	312, 714
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	1 cut(s)	249
HspAI	GCGC	4 cut(s)	73, 137, 333, 355
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	192, 466
LmnI	GCTCC	4 cut(s)	168, 285, 593, 634
Lsp1109I	GCAGC	3 cut(s)	70, 126, 322
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	2 cut(s)	312, 714
MaeIII	GTNAC	3 cut(s)	63, 248, 394
MalI	GATC	2 cut(s)	194, 468
MboI	GATC	2 cut(s)	192, 466
MboII	GAAGA	5 cut(s)	359, 427, 463, 637, 686
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	1 cut(s)	548
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	1 cut(s)	692
MspI	CCGG	4 cut(s)	91, 145, 177, 452
MspR9I	CCNGG	3 cut(s)	146, 452, 570
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	8, 357
NciI	CCSGG	2 cut(s)	146, 452
NdeII	GATC	2 cut(s)	192, 466
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	2 cut(s)	525, 660
NmuCI	GTSAC	2 cut(s)	248, 394
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	443
PciI	ACATGT	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	743
PflFI	GACNNNGTC	3 cut(s)	110, 185, 713
PkrI	GCNGC	3 cut(s)	85, 141, 337
PscI	ACATGT	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	525, 660
PspPI	GGNCC	1 cut(s)	523
PsyI	GACNNNGTC	3 cut(s)	110, 185, 713
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	3 cut(s)	84, 140, 336
Sau3AI	GATC	2 cut(s)	192, 466
Sau96I	GGNCC	1 cut(s)	523
ScrFI	CCNGG	3 cut(s)	146, 452, 570
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	68, 530
SmoI	CTYRAG	2 cut(s)	68, 530
Sse9I	AATT	1 cut(s)	548
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	8, 448
SspI	AATATT	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	144, 450, 568
TaaI	ACNGT	6 cut(s)	32, 112, 187, 383, 499, 620
TaiI	ACGT	2 cut(s)	315, 717
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	548
TfiI	GAWTC	1 cut(s)	743
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TscAI	CASTG	3 cut(s)	115, 403, 643
TseFI	GTSAC	2 cut(s)	248, 394
TseI	GCWGC	3 cut(s)	83, 139, 335
Tsp45I	GTSAC	2 cut(s)	248, 394
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	2 cut(s)	536, 543
TspRI	CASTG	3 cut(s)	115, 403, 643
Tth111I	GACNNNGTC	3 cut(s)	110, 185, 713
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	715
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.